mRNA_H-elongata_contig57255.13189.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig57255.13189.1
Unique NamemRNA_H-elongata_contig57255.13189.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig57255.13189.1 vs. uniprot
Match: A0A6H5JXP7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JXP7_9PHAE)

HSP 1 Score: 84.0 bits (206), Expect = 9.350e-18
Identity = 34/45 (75.56%), Postives = 40/45 (88.89%), Query Frame = 1 
Query:    1 IEAFYRLNGHSRVPTRYVVPAEDPWPMEVWGHKLGSRIAQMRQTG 135
            I  F+ ++GHSRVP R+VVPAE+PWPME+WGHKLGSRIAQMR TG
Sbjct:  338 IGVFFGIHGHSRVPMRFVVPAEEPWPMEIWGHKLGSRIAQMRMTG 382
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BLAST of mRNA_H-elongata_contig57255.13189.1 vs. uniprot
Match: D7FJQ7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FJQ7_ECTSI)

HSP 1 Score: 84.0 bits (206), Expect = 9.370e-18
Identity = 34/45 (75.56%), Postives = 40/45 (88.89%), Query Frame = 1 
Query:    1 IEAFYRLNGHSRVPTRYVVPAEDPWPMEVWGHKLGSRIAQMRQTG 135
            I  F+ ++GHSRVP R+VVPAE+PWPME+WGHKLGSRIAQMR TG
Sbjct:  224 IGVFFGIHGHSRVPMRFVVPAEEPWPMEIWGHKLGSRIAQMRMTG 268
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BLAST of mRNA_H-elongata_contig57255.13189.1 vs. uniprot
Match: G5ACL9_PHYSP (HA domain-containing protein n=1 Tax=Phytophthora sojae (strain P6497) TaxID=1094619 RepID=G5ACL9_PHYSP)

HSP 1 Score: 58.9 bits (141), Expect = 5.430e-9
Identity = 24/44 (54.55%), Postives = 32/44 (72.73%), Query Frame = 1 
Query:    4 EAFYRLNGHSRVPTRYVVPAEDPWPMEVWGHKLGSRIAQMRQTG 135
            EAF+RL+GH RVPTR+VVP+++ WP   WG KLG  +  +R  G
Sbjct:  152 EAFHRLHGHCRVPTRFVVPSDERWPKLSWGLKLGIVVDNIRNRG 195
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BLAST of mRNA_H-elongata_contig57255.13189.1 vs. uniprot
Match: A0A6A3KGZ8_9STRA (Uncharacterized protein n=2 Tax=Phytophthora rubi TaxID=129364 RepID=A0A6A3KGZ8_9STRA)

HSP 1 Score: 51.6 bits (122), Expect = 9.350e-7
Identity = 19/45 (42.22%), Postives = 29/45 (64.44%), Query Frame = 1 
Query:    1 IEAFYRLNGHSRVPTRYVVPAEDPWPMEVWGHKLGSRIAQMRQTG 135
            +E +  + G  ++P ++VVP+E PWP E WG KLGS +  +R  G
Sbjct:   58 LETYVDIFGDGKIPWKFVVPSEVPWPEEAWGKKLGSLLRGLRSKG 102
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BLAST of mRNA_H-elongata_contig57255.13189.1 vs. uniprot
Match: A0A835YSF3_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YSF3_9STRA)

HSP 1 Score: 52.4 bits (124), Expect = 1.250e-6
Identity = 21/45 (46.67%), Postives = 30/45 (66.67%), Query Frame = 1 
Query:    1 IEAFYRLNGHSRVPTRYVVPAEDPWPMEVWGHKLGSRIAQMRQTG 135
            +  +  L+G +RVP+R+ VPAE PWP  + G KLG R+  +R TG
Sbjct:  136 LRTYAALHGDTRVPSRFAVPAEAPWPEALHGDKLGMRVNAIRSTG 180
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BLAST of mRNA_H-elongata_contig57255.13189.1 vs. uniprot
Match: G4YEG8_PHYSP (HA domain-containing protein n=1 Tax=Phytophthora sojae (strain P6497) TaxID=1094619 RepID=G4YEG8_PHYSP)

HSP 1 Score: 50.8 bits (120), Expect = 4.250e-6
Identity = 19/43 (44.19%), Postives = 30/43 (69.77%), Query Frame = 1 
Query:    1 IEAFYRLNGHSRVPTRYVVPAEDP-WPMEVWGHKLGSRIAQMR 126
            ++ +Y +NGHS VP+ +VVP++D  WP  +WG +LG  I  +R
Sbjct:   71 LQKYYEINGHSEVPSVFVVPSDDDRWPKVLWGFRLGQTITSIR 113
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BLAST of mRNA_H-elongata_contig57255.13189.1 vs. uniprot
Match: A0A482RVD4_9ARCH (HA domain-containing protein (Fragment) n=1 Tax=archaeon TaxID=1906665 RepID=A0A482RVD4_9ARCH)

HSP 1 Score: 50.8 bits (120), Expect = 4.370e-6
Identity = 18/43 (41.86%), Postives = 33/43 (76.74%), Query Frame = 1 
Query:    1 IEAFYRLNGHSRVPTRYVVPAEDPWPMEVWGHKLGSRIAQMRQ 129
            ++A+ +++G+  VP  +VVP+ +PWP++VWG KLG R+  +R+
Sbjct:   97 LQAYKQVHGNVDVPLSFVVPSYEPWPVDVWGLKLGLRVQAIRK 139
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BLAST of mRNA_H-elongata_contig57255.13189.1 vs. uniprot
Match: A0A7S0GUH9_9EUKA (Hypothetical protein n=1 Tax=Amorphochlora amoebiformis TaxID=1561963 RepID=A0A7S0GUH9_9EUKA)

HSP 1 Score: 50.4 bits (119), Expect = 5.950e-6
Identity = 21/42 (50.00%), Postives = 28/42 (66.67%), Query Frame = 1 
Query:    1 IEAFYRLNGHSRVPTRYVVPAEDPWPMEVWGHKLGSRIAQMR 126
            +  +Y L+G   VP  YVVP+EDPWP+EV G  LG R+  +R
Sbjct:   83 LRTYYDLSGDLDVPYAYVVPSEDPWPLEVQGLPLGIRVQTIR 124
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BLAST of mRNA_H-elongata_contig57255.13189.1 vs. uniprot
Match: W2Q1I9_PHYPN (HA domain-containing protein n=9 Tax=Phytophthora TaxID=4783 RepID=W2Q1I9_PHYPN)

HSP 1 Score: 50.4 bits (119), Expect = 5.980e-6
Identity = 19/45 (42.22%), Postives = 27/45 (60.00%), Query Frame = 1 
Query:    1 IEAFYRLNGHSRVPTRYVVPAEDPWPMEVWGHKLGSRIAQMRQTG 135
            I  +  +  + ++P ++VVP EDPWP   WG KLGS +  MR  G
Sbjct:  325 IRGYAEVFKNGKIPQKFVVPYEDPWPRSAWGTKLGSILRDMRSKG 369
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BLAST of mRNA_H-elongata_contig57255.13189.1 vs. uniprot
Match: K3WY59_GLOUD (HA domain-containing protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WY59_GLOUD)

HSP 1 Score: 50.4 bits (119), Expect = 5.980e-6
Identity = 20/43 (46.51%), Postives = 28/43 (65.12%), Query Frame = 1 
Query:    1 IEAFYRLNGHSRVPTRYVVPAEDP-WPMEVWGHKLGSRIAQMR 126
            ++ F  L GH R+P R+VVP +D  WP   WG KLG+ + Q+R
Sbjct:  159 LQTFQTLEGHLRIPRRFVVPEDDERWPKASWGFKLGAHVNQLR 201
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig57255.13189.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 14
Match NameE-valueIdentityDescription
A0A6H5JXP7_9PHAE9.350e-1875.56Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FJQ7_ECTSI9.370e-1875.56Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
G5ACL9_PHYSP5.430e-954.55HA domain-containing protein n=1 Tax=Phytophthora ... [more]
A0A6A3KGZ8_9STRA9.350e-742.22Uncharacterized protein n=2 Tax=Phytophthora rubi ... [more]
A0A835YSF3_9STRA1.250e-646.67Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
G4YEG8_PHYSP4.250e-644.19HA domain-containing protein n=1 Tax=Phytophthora ... [more]
A0A482RVD4_9ARCH4.370e-641.86HA domain-containing protein (Fragment) n=1 Tax=ar... [more]
A0A7S0GUH9_9EUKA5.950e-650.00Hypothetical protein n=1 Tax=Amorphochlora amoebif... [more]
W2Q1I9_PHYPN5.980e-642.22HA domain-containing protein n=9 Tax=Phytophthora ... [more]
K3WY59_GLOUD5.980e-646.51HA domain-containing protein n=1 Tax=Globisporangi... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig57255contigH-elongata_contig57255:391..525 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score85.1
Seed ortholog evalue9e-15
Seed eggNOG ortholog2880.D7FJQ7
EggNOG OGs2BAJG@1,2S0VX@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size135
Cds size135
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930930.831814-CDS-H-elongata_contig57255:390..5251622930930.831814-CDS-H-elongata_contig57255:390..525Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig57255 391..525 -
1691679629.5080197-CDS-H-elongata_contig57255:390..5251691679629.5080197-CDS-H-elongata_contig57255:390..525Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig57255 391..525 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig57255.13189.1prot_H-elongata_contig57255.13189.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig57255 391..525 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig57255.13189.1

>prot_H-elongata_contig57255.13189.1 ID=prot_H-elongata_contig57255.13189.1|Name=mRNA_H-elongata_contig57255.13189.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=45bp
IEAFYRLNGHSRVPTRYVVPAEDPWPMEVWGHKLGSRIAQMRQTG
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mRNA from alignment at H-elongata_contig57255:391..525-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig57255.13189.1 ID=mRNA_H-elongata_contig57255.13189.1|Name=mRNA_H-elongata_contig57255.13189.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=135bp|location=Sequence derived from alignment at H-elongata_contig57255:391..525- (Himanthalia elongata Himel1 dioecious)
ATCGAGGCGTTTTACCGGTTGAACGGACACTCGCGGGTGCCGACGCGTTA
CGTCGTGCCGGCGGAGGATCCCTGGCCCATGGAAGTATGGGGGCACAAGC
TGGGGTCCCGCATCGCGCAGATGCGGCAAACGGGT
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Coding sequence (CDS) from alignment at H-elongata_contig57255:391..525-

>mRNA_H-elongata_contig57255.13189.1 ID=mRNA_H-elongata_contig57255.13189.1|Name=mRNA_H-elongata_contig57255.13189.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=270bp|location=Sequence derived from alignment at H-elongata_contig57255:391..525- (Himanthalia elongata Himel1 dioecious)
ATCGAGGCGTTTTACCGGTTGAACGGACACTCGCGGGTGCCGACGCGTTA
CGTCGTGCCGGCGGAGGATCCCTGGCCCATGGAAGTATGGGGGCACAAGC
TGGGGTCCCGCATCGCGCAGATGCGGCAAACGGGTATCGAGGCGTTTTAC
CGGTTGAACGGACACTCGCGGGTGCCGACGCGTTACGTCGTGCCGGCGGA
GGATCCCTGGCCCATGGAAGTATGGGGGCACAAGCTGGGGTCCCGCATCG
CGCAGATGCGGCAAACGGGT
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