mRNA_H-elongata_contig57231.13185.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig57231.13185.1 vs. uniprot
Match: D8LFX4_ECTSI (Probable high CO2 inducible periplasmic protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LFX4_ECTSI) HSP 1 Score: 213 bits (542), Expect = 5.440e-64 Identity = 95/160 (59.38%), Postives = 121/160 (75.62%), Query Frame = 1
Query: 1 YQSVWMYVIHKLDGAISDSYAGDVTNNDGDPHAWDKGWAFWSGSLEGEEGTGEGLMRYALAETKCEQFGTCTGDDDGDKTTGTSAVNYKLLKLFNKGLARLQAGDCGDVEAIKENIVKLMTVPLLQGLIRYIYLADPDKGNGGDKEAAELWAFAVAVLPR 480
YQ+VWMYVIH+L+ AI D G++ NDG PHAWD+GW F++GSLEG EGTG+G+M YALAE +CE F TCT DDDG TGT+ VN +L+L+ +G L GDCG +K+ I+ LM VPL+QG++RY Y ADP+ G+GGDK AAELWAF+ A+LPR
Sbjct: 147 YQNVWMYVIHELEDAIEDCDIGNLNANDGGPHAWDEGWGFYAGSLEGTEGTGDGVMLYALAEKRCENFATCTADDDGSDITGTAQVNSDMLELYKEGQVYLLDGDCGAAGDVKDKIIDLMGVPLVQGMLRYFYNADPEAGDGGDKAAAELWAFSAAMLPR 306
BLAST of mRNA_H-elongata_contig57231.13185.1 vs. uniprot
Match: D8LQ42_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LQ42_ECTSI) HSP 1 Score: 208 bits (530), Expect = 1.470e-58 Identity = 96/161 (59.63%), Postives = 121/161 (75.16%), Query Frame = 1
Query: 1 YQSVWMYVIHKLDGAISDSYAGDVTNNDGDPHAWDKGWAFWSGSLEGEE--GTGEGLMRYALAETKCEQFGTCTGDDDGDKTTGTSAVNYKLLKLFNKGLARLQAGDCGDVEAIKENIVKLMTVPLLQGLIRYIYLADPDKGNGGDKEAAELWAFAVAVLP 477
YQ++WMYV H+L A+ D GD++ NDG PHAWD+GWAF++GSLEG + GTG+G M YALAE +CE FGTCTGD DG TTG SA+N +LL L+ G A L A +C + A+ + I+ LM VPL+QGL+RY YLADP G GGDKEAAELWAF+ ++LP
Sbjct: 156 YQNIWMYVTHELYDAVGDCENGDLSANDGGPHAWDEGWAFYAGSLEGTDVGGTGDGQMLYALAEKRCENFGTCTGDSDGSDTTGVSAINSELLTLWETGQASLLAEECTEASAVIDQILPLMAVPLIQGLLRYTYLADPAIGTGGDKEAAELWAFSASILP 316
BLAST of mRNA_H-elongata_contig57231.13185.1 vs. uniprot
Match: A0A6H5KYS6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KYS6_9PHAE) HSP 1 Score: 200 bits (508), Expect = 2.290e-57 Identity = 97/170 (57.06%), Postives = 118/170 (69.41%), Query Frame = 1
Query: 1 YQSVWMYVIHKLDGAISDSYAG---------DVTNNDGDPHAWDKGWAFWSGSLEGEE--GTGEGLMRYALAETKCEQFGTCTGDDDGDKTTGTSAVNYKLLKLFNKGLARLQAGDCGDVEAIKENIVKLMTVPLLQGLIRYIYLADPDKGNGGDKEAAELWAFAVAVLP 477
YQ+VWMYV H+L A+ D G D++ NDG PHAWD+GWAF++GSLEG G+G+G M YALAE +CE FGTCTGD DG TG SA+N +LL L+ G A L AG C A+ + I+ LM VPL+QGL+RY YLADP G GGDKEAAELWAF+ A+LP
Sbjct: 311 YQNVWMYVTHELYDAVEDCEIGGGCVKVAEGDLSANDGGPHAWDEGWAFYTGSLEGTAVGGSGDGQMLYALAEKRCENFGTCTGDSDGSDATGVSAINSELLDLWEDGKANLLAGQCTQASAVIDEILPLMAVPLIQGLLRYTYLADPAIGTGGDKEAAELWAFSAAILP 480
BLAST of mRNA_H-elongata_contig57231.13185.1 vs. uniprot
Match: A0A7S2V1S6_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V1S6_9STRA) HSP 1 Score: 196 bits (499), Expect = 1.140e-55 Identity = 90/160 (56.25%), Postives = 118/160 (73.75%), Query Frame = 1
Query: 1 YQSVWMYVIHKLDGAISDSYAGDVTNNDGDPHAWDKGWAFWSGSLEGEEGTGEGLMRYALAETKCEQFGTCTGDDDGDKTTGTSAVNYKLLKLFNKGLARLQAGDCGDVEAIKENIVKLMTVPLLQGLIRYIYLADPDKGNGGDKEAAELWAFAVAVLPR 480
YQ+VWMYVIH+++ AI+D A D+T ND AWD+ AF++GSL G GTG G + Y LA+ +C FGTCTGD+DG+ GT+AVN K+ F++G+ LQ G+C DV IK+NIV MT+PL+QG++RY+Y ADP GNGG+K AELWAFA A+LPR
Sbjct: 20 YQNVWMYVIHEMEDAINDCVADDLTTNDAAVVAWDEAVAFYTGSLVGTTGTGSGNLLYTLAQKRCANFGTCTGDNDGNDFEGTAAVNEKVFNFFDQGIVELQIGECQDVIKIKDNIVDQMTIPLIQGVMRYLYWADPAGGNGGNKAHAELWAFAAAILPR 179
BLAST of mRNA_H-elongata_contig57231.13185.1 vs. uniprot
Match: A0A7S1TU13_9STRA (Hypothetical protein (Fragment) n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1TU13_9STRA) HSP 1 Score: 181 bits (458), Expect = 9.660e-52 Identity = 87/164 (53.05%), Postives = 110/164 (67.07%), Query Frame = 1
Query: 1 YQSVWMYVIHKLDGAISDSYAGDVTNNDGDPHAWDKGWAFWSGSLEG--EEGTGEGLMRYALAETKCEQFGTCTGDDDGDKTTGTSAVNYKLLKLFNKGLARLQAGDCGDVEAIKENIVKLMTVPLLQGLIRYIYLADPDKG--NGGDKEAAELWAFAVAVLPR 480
Y WMYVIH+++ AI+D GD+T+ND HAWD+ W F+SG+LEG EEG +G++ Y LAE +C FGTC GDDDGD TTG S VN +LL L+ +G+ L+ G C E I IVK MTVPL+QG +RY Y ADP+ G K+ AE WAF AVLP+
Sbjct: 56 YSVTWMYVIHEMEDAINDCNEGDITSNDDAVHAWDEAWVFYSGTLEGSSEEGNRDGVLAYRLAEKRCANFGTCNGDDDGDATTGKSLVNDQLLSLYKQGMHALEDGKCNSAEVILRAIVKQMTVPLIQGTLRYAYKADPNGGADTPASKQQAEGWAFTSAVLPQ 219
BLAST of mRNA_H-elongata_contig57231.13185.1 vs. uniprot
Match: A0A7R9Y8Q2_9STRA (Hypothetical protein (Fragment) n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9Y8Q2_9STRA) HSP 1 Score: 173 bits (438), Expect = 1.170e-46 Identity = 88/168 (52.38%), Postives = 112/168 (66.67%), Query Frame = 1
Query: 1 YQSVWMYVIHKLDGAISDSYAGDVTNNDGDP--HAWDKGWAFWSGSLEGEEGTGEGLMRYALAETKCEQFGTCTGDDDGDKTTGTSAVNYKLLKLFNKGLARLQAGDCGDVEAIKENIVKLMTVPLLQGLIRYIYLADPDKGN------GGDKEAAELWAFAVAVLPR 480
YQ+ WMYVIH+L+ A+ D AG NN+ DP HAWD+GWAF++GSLE +GTG G+ YALAE +C F TCTGDDDGD +TG SAVN +LL L+ +G L AG+C + IVK MTVPL+QG++RY YLAD G + + AE WAF AV+P+
Sbjct: 466 YQNTWMYVIHELEDAVLDCQAGTPMNNE-DPAVHAWDEGWAFYAGSLE--DGTGSGVQVYALAEKRCANFFTCTGDDDGDASTGRSAVNAELLSLYQEGQLALNAGNCNGAALVVREIVKQMTVPLIQGVLRYAYLADQSIGGVQATPEEWEDDQAEGWAFTAAVMPQ 630
BLAST of mRNA_H-elongata_contig57231.13185.1 vs. uniprot
Match: D8LDE3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LDE3_ECTSI) HSP 1 Score: 167 bits (422), Expect = 4.020e-44 Identity = 84/162 (51.85%), Postives = 106/162 (65.43%), Query Frame = 1
Query: 1 YQSVWMYVIHKLDGAISDSYAGDVTNNDGDPHAWDKGWAFWSGSLEGEEGT--GEGLMRYALAETKCEQFGTCTGDDDGDKTTGTSAVNYKLLKLFNKGLARLQAGDCGDVEAIKENIVKLMTVPLLQGLIRYIYLADPDKGNGGD-KEAAELWAFAVAVLP 477
YQ+VWMYVIH+++ A+ GD DG PH WD+ WAF++GSLEGE G G+G M YALA+ +C FGTC G D TGT+A+N +L+L G L G C + E KE+IV+LMTVPL+Q +RY+Y ADP GD K AELWAFA A+LP
Sbjct: 148 YQNVWMYVIHEMENAVGACNRGDNGAADGGPHYWDEAWAFYAGSLEGESGNADGDGKMLYALAQKRCGNFGTCGG---ADGITGTAAINDDILELIGAGSGYLLEGKCAEAEEAKESIVQLMTVPLVQATLRYLYRADPASDYDGDAKHWAELWAFAAAILP 306
BLAST of mRNA_H-elongata_contig57231.13185.1 vs. uniprot
Match: A0A7S2UVU0_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2UVU0_9STRA) HSP 1 Score: 155 bits (392), Expect = 2.350e-43 Identity = 74/144 (51.39%), Postives = 99/144 (68.75%), Query Frame = 1
Query: 52 DSYAGDVTNNDGDPHAWDKGWAFWSGSLEGEEGTGEGLMRYALAETKCEQFGTCTGD-DDGDKTTGTSAVNYKLLKLFNKGLARLQAGDCGDVEAIKENIVKLMTVPLLQGLIRYIYLADPDKGNGGDKEAAELWAFAVAVLPR 480
D + D+T+ND AWD+ AF++GSLEG +G G G + Y+LA+ +C FGTCTGD + + +GTSAVN +++ LF +G L GDCG VE +K IV MT+PL+QG +RY+Y ADP N G+K AELWAFA A+LPR
Sbjct: 2 DCKSSDLTDNDNGVVAWDEAVAFYTGSLEGVDGKGNGNLLYSLADKRCANFGTCTGDVGNSNAISGTSAVNERVMNLFREGQVNLHNGDCGHVEEVKGAIVDQMTIPLVQGTLRYLYKADPKGANEGNKARAELWAFAAAILPR 145
BLAST of mRNA_H-elongata_contig57231.13185.1 vs. uniprot
Match: A0A7S1Y3V3_9STRA (Hypothetical protein n=1 Tax=Grammatophora oceanica TaxID=210454 RepID=A0A7S1Y3V3_9STRA) HSP 1 Score: 152 bits (384), Expect = 7.600e-42 Identity = 77/159 (48.43%), Postives = 103/159 (64.78%), Query Frame = 1
Query: 1 YQSVWMYVIHKLDGAISDSYAGDVTNNDGDPHAWDKGWAFWSGSLEGEEGTGEGLMRYALAETKCEQFGTCTGDDDGDKTTGTSAVNYKLLKLFNKGLARLQAGDCGDVEAIKENIVKLMTVPLLQGLIRYIYLADPDKGNGGDKEAAELWAFAVAVLP 477
Y SVWMYVI + + A+ D G +T+ND HAWD+G AF++GSLEG G+ +G+M Y LAE +C+ F TC + GD+ TGTS VN +LL+LF++G + G CG+ KE IV+LMTVPL+QG +RY Y + +K AE FA AVLP
Sbjct: 11 YMSVWMYVIREFEDALDDCVEGRITDNDDPVHAWDEGVAFYAGSLEGPSGSDDGVMPYRLAEKRCQNFKTC--GEKGDELTGTSYVNIELLRLFDQGQNDILTGQCGEARKKKERIVELMTVPLIQGTLRYAYRSAALPTLDTEKGRAEGSTFAAAVLP 167
BLAST of mRNA_H-elongata_contig57231.13185.1 vs. uniprot
Match: A0A7S1UKY6_9STRA (Hypothetical protein n=1 Tax=Grammatophora oceanica TaxID=210454 RepID=A0A7S1UKY6_9STRA) HSP 1 Score: 153 bits (386), Expect = 1.410e-41 Identity = 76/159 (47.80%), Postives = 101/159 (63.52%), Query Frame = 1
Query: 1 YQSVWMYVIHKLDGAISDSYAGDVTNNDGDPHAWDKGWAFWSGSLEGEEGTGEGLMRYALAETKCEQFGTCTGDDDGDKTTGTSAVNYKLLKLFNKGLARLQAGDCGDVEAIKENIVKLMTVPLLQGLIRYIYLADPDKGNGGDKEAAELWAFAVAVLP 477
Y ++WMY I + + A+ D G +TNND HAWD+G AF++GSLEG EG+ +GL+ Y LAE +C F TC DGD+ TGTS VN +L+KLFN+G + G C D +KE I +LM+VPL+QG IRY + + G +K E FA AVLP
Sbjct: 108 YMNIWMYAIREFEDALDDCVEGRLTNNDDPVHAWDEGVAFYAGSLEGAEGSDDGLLLYRLAEKRCANFKTC--GQDGDELTGTSHVNVQLVKLFNEGKGNILNGRCADARVVKERIAQLMSVPLIQGTIRYAH----ESKRGTEKGQLEGSTFAAAVLP 260 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig57231.13185.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig57231.13185.1 >prot_H-elongata_contig57231.13185.1 ID=prot_H-elongata_contig57231.13185.1|Name=mRNA_H-elongata_contig57231.13185.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=187bp MYVIHKLDGAISDSYAGDVTNNDGDPHAWDKGWAFWSGSLEGEEGTGEGLback to top mRNA from alignment at H-elongata_contig57231:1886..3377+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig57231.13185.1 ID=mRNA_H-elongata_contig57231.13185.1|Name=mRNA_H-elongata_contig57231.13185.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1492bp|location=Sequence derived from alignment at H-elongata_contig57231:1886..3377+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig57231:1886..3377+ >mRNA_H-elongata_contig57231.13185.1 ID=mRNA_H-elongata_contig57231.13185.1|Name=mRNA_H-elongata_contig57231.13185.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1122bp|location=Sequence derived from alignment at H-elongata_contig57231:1886..3377+ (Himanthalia elongata Himel1 dioecious)back to top |