mRNA_H-elongata_contig5721.13180.1 (mRNA) Himanthalia elongata Himel1 dioecious
|
Overview
Homology
BLAST of mRNA_H-elongata_contig5721.13180.1 vs. uniprot
Match: D8LLY5_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LLY5_ECTSI) HSP 1 Score: 309 bits (791), Expect = 1.520e-96 Identity = 168/311 (54.02%), Postives = 213/311 (68.49%), Query Frame = 2
Query: 2 GTVAGFVECLASYPLDTIKTRMQAQPGAGSPMSY--FFSAIKEDGARALYRGVSSRLAASMIAASVMFGTNGTLKELLHADSRKPLTVPFMAAAAGTGVLEAFVYCPLELIKTRMQVVRGSPVGVTVWSMTAKICRNPGPFKGLYRGLSPMMMRDIFGNTFFFGSYELSKQALASGSP--------------------DEEASVVTIALAGGVAGITFSAAIHPLDTVKSLIQADSMEAPKYRGVVHGFERAVAHG-----------GGGFGGLA---GLYRGLSPAIARAFVANAVLFLTFESVLDALGR 826
GT+ G EC+A+YPLDT+KTRMQ A S ++ F +AI+EDGA ALYRG+SSR+ ASM+AASV+FG NGTLKE+ ADS +PL+ FM AA GTGVLEA YCPLEL+KTRMQV+RGSP GVTVW+ A+I R+ G FKG Y+G S M++++ GNT +FGSYEL KQAL S E+A + I AGG AG+ ++ A HP+DTVKSL+Q DS++AP+YRG + G+ +A+A G G GG+ GLYRGLSPAIARAF+ N+ LF+T+ESVLD LGR
Sbjct: 66 GTIGGLAECMAAYPLDTVKTRMQTSEAASSGGAFRCFSTAIREDGALALYRGMSSRVVASMLAASVLFGANGTLKEVFGADSSQPLSGRFMLAAMGTGVLEAIAYCPLELVKTRMQVLRGSPAGVTVWTTGAQIYRHHGIFKGSYKGFSSMLLKEGLGNTVYFGSYELCKQALGGRSTGGAVGSGXXXXXXXXXXXXHQEQAGIGPIVAAGGCAGVLYTVATHPIDTVKSLVQTDSIKAPRYRGFLDGWRQALAQGRRRHGVGRGDGAGAVGGVKAFLGLYRGLSPAIARAFLGNSALFVTYESVLDVLGR 376
BLAST of mRNA_H-elongata_contig5721.13180.1 vs. uniprot
Match: UPI00129D825F (mitochondrial carnitine/acylcarnitine carrier-like protein n=1 Tax=Nymphaea colorata TaxID=210225 RepID=UPI00129D825F) HSP 1 Score: 169 bits (429), Expect = 1.770e-44 Identity = 108/290 (37.24%), Postives = 154/290 (53.10%), Query Frame = 2
Query: 2 GTVAGFVECLASYPLDTIKTRMQAQPGA--GSPMSYF--FSAIKE----DGARALYRGVSSRLAASMIAASVMFGTNGTLKELLHADSRKPLTVPF-MAAAAGTGVLEAFVYCPLELIKTRMQV--VRGSPVGVTV-----WSMTAKICRNPGPFKGLYRGLSPMMMRDIFGNTFFFGSYELSKQALASGSPDEEASVVTIALAGGVAGITFSAAIHPLDTVKSLIQADSMEAPKYRGVVHGFERAVAHGGGGFGGLAGLYRGLSPAIARAFVANAVLFLTFESVLDALG 823
GTV G + + +P DTIK ++Q+QP G P Y A+K+ +G R LY+G+ + LA +V+F G ++ LL + PL+V M AG GV AF+ CP ELIK R+Q GS G + + + ++ G GL++GL P R++ GN F FG YEL KQ +A G ++ +AGG+AG +F ++P D VKSLIQ D + PKY G V F++ + G L GLY+G PA+AR+ ANA FL +E +LG
Sbjct: 11 GTVGGAAQLIVGHPFDTIKVKLQSQPAPLPGQPPKYSGAMDAVKQTVAAEGPRGLYKGMGAPLATVAAFNAVLFTARGQMEALLRSAPGVPLSVEQQMVCGAGAGVAVAFLACPTELIKCRLQAQSALGSTGGSAIKYNGPMDVAKHVLKSEGGTLGLFKGLVPTFAREVPGNAFMFGVYELVKQYIAGGKDTSSLGRGSLIVAGGLAGASFWVTVYPTDVVKSLIQVDDYKNPKYSGSVDAFKKVLRTEG-----LKGLYKGFGPAMARSVPANAACFLAYEITRASLG 295
BLAST of mRNA_H-elongata_contig5721.13180.1 vs. uniprot
Match: A9TMK8_PHYPA (Predicted protein n=3 Tax=Physcomitrium patens TaxID=3218 RepID=A9TMK8_PHYPA) HSP 1 Score: 169 bits (429), Expect = 2.370e-44 Identity = 107/300 (35.67%), Postives = 160/300 (53.33%), Query Frame = 2
Query: 2 GTVAGFVECLASYPLDTIKTRMQAQPGA--GSPMSYF--FSAIKE----DGARALYRGVSSRLAASMIAASVMFGTNGTLKELLHADSRKPLTV-PFMAAAAGTGVLEAFVYCPLELIKTRMQV---------------VRGSPVGVT--VWSMTAKICRNPGPFKGLYRGLSPMMMRDIFGNTFFFGSYELSKQALASGSPDEEASVVTIALAGGVAGITFSAAIHPLDTVKSLIQADSMEAPKYRGVVHGFERAVAHGGGGFGGLAGLYRGLSPAIARAFVANAVLFLTFESVLDALG 823
GT AG + L +P DTIK ++Q+QP G P + A+K+ +G + LY+G+ + LA + +V+F G ++ LL L+V M A AG GV + V CP EL+K R+Q + G+P G + + + ++ G GLY+GL+P +MR++ GN FG+YE +KQ LA G + S ++ AGGVAG F +++P D +KS+IQ D PKY+G + F + A G + GLYRG PA+AR+ ANA FL +E V ++LG
Sbjct: 12 GTFAGVAQLLVGHPFDTIKVKLQSQPAPLPGHPPKFSGAIDAVKQTLAAEGPKGLYKGMGAPLATVAVFNAVLFTARGQMEGLLRDSPGAHLSVGQQMVAGAGAGVACSMVACPTELVKCRLQAQSALATTVEIPVLAGIGGAPAGRYNGPFDVAKHVLKSEGGVLGLYKGLTPTLMREVPGNAAMFGAYEATKQYLAGGQDTSKLSRGSMLFAGGVAGAMFWVSVYPTDVIKSVIQVDDHRNPKYKGTMDAFRKVFAAEG-----VKGLYRGFGPAMARSVPANAACFLAYELVRESLG 306
BLAST of mRNA_H-elongata_contig5721.13180.1 vs. uniprot
Match: A0A5D6XLB4_9STRA (Uncharacterized protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6XLB4_9STRA) HSP 1 Score: 168 bits (426), Expect = 1.120e-43 Identity = 109/288 (37.85%), Postives = 159/288 (55.21%), Query Frame = 2
Query: 2 GTVAGFVECLASYPLDTIKTRMQAQPGAG--SPMSYFFSAIKEDGARALYRGVSSRLAASMIAASVMFGTNGTLKELL--HADSRKPLTVPFMAAAAGTGVLEAFVYCPLELIKTRMQVVRG-SPVGVTVWSMTAKICRNPGPFKGLYRGLSPMMMRDIFGNTFFFGSYELSKQAL-------ASGSPDEEASVVT---IALAGGVAGITFSAAIHPLDTVKSLIQADSMEAPKYRGVVHGFERAVAHGGGGFGGLAGLYRGLSPAIARAFVANAVLFLTFESVLDAL 820
GTVAG E + YPL+T+K RMQ + P+ +++E G +LYRG S ++ S ++ASV+FG G + + KP +AA TG+ E+F+Y P E+IK RMQ S V+ W ++ + G +G+YRG+ P R++ GNT +F +YE +K+ L A E+A V T IALAGG AG + + P+DTVKS++QADS+ P+YRGV ++ GG A RG+SP++ RAF ANAV F+ FE+ + L
Sbjct: 44 GTVAGACEAVVGYPLETVKARMQTEKAQAFSGPLDCMRKSVREGGVASLYRGASPQIFRSAVSASVLFGLMGQYRHFYNTYVFDNKP-QFGLVAAGMSTGLTESFLYTPFEIIKIRMQTQHTHSRTRVSNWQCVKEVY-SQGGVRGMYRGVVPYAQREMLGNTAYFMAYEFAKEYLLERFVHRAPPMTPEKAHVRTYQAIALAGGYAGFMYWVVVFPVDTVKSVMQADSLTHPRYRGVWDCAQKLYQEGG-----PARFVRGISPSLLRAFPANAVTFVAFETCMSFL 324
BLAST of mRNA_H-elongata_contig5721.13180.1 vs. uniprot
Match: UPI00053A3E10 (mitochondrial carnitine/acylcarnitine carrier-like protein n=3 Tax=Camelina sativa TaxID=90675 RepID=UPI00053A3E10) HSP 1 Score: 161 bits (408), Expect = 1.930e-41 Identity = 100/295 (33.90%), Postives = 151/295 (51.19%), Query Frame = 2
Query: 2 GTVAGFVECLASYPLDTIKTRMQAQP----GAGSPMSYFFSAIKE----DGARALYRGVSSRLAASMIAASVMFGTNGTLKELLHADSRKPLTV-PFMAAAAGTGVLEAFVYCPLELIKTRMQVVRGSPVGVTVWSMTAKI------------CRNPGPFKGLYRGLSPMMMRDIFGNTFFFGSYELSKQALASGSPDEEASVVTIALAGGVAGITFSAAIHPLDTVKSLIQADSMEAPKYRGVVHGFERAVAHGGGGFGGLAGLYRGLSPAIARAFVANAVLFLTFESVLDALG 823
GTV G + + +P DTIK ++Q+QP G S A+K+ +G R L++G+ + LA +V+F G ++ L +++ PLT+ AG G AF+ CP ELIK R+Q G T S+ A + R+ G +GL++GL P R++ GN F +YE K+ LA GS ++ +AGGVAG +F ++P D VKS++Q D + PKY G + F + + G + GLY+G PA+AR+ ANA FL +E +LG
Sbjct: 11 GTVGGAAQLIVGHPFDTIKVKLQSQPTPAPGQAPRYSGAIDAVKQTVAAEGPRGLFKGMGAPLATVAAFNAVLFTVRGQMEGLFRSEAGVPLTIRQQFVCGAGAGFAVAFLACPTELIKCRLQAQGGLARATTTGSVLAAVKYGGPMDVARHVLRSEGGTRGLFKGLVPTFAREVPGNAMMFAAYEAFKRFLAGGSDTSSLGQGSLIMAGGVAGASFWGIVYPTDVVKSVLQVDDYKNPKYTGSMDAFRKILKSEG-----VKGLYKGFGPAMARSVPANAACFLAYEMTRSSLG 300
BLAST of mRNA_H-elongata_contig5721.13180.1 vs. uniprot
Match: A0A2D4C5I1_PYTIN (Uncharacterized protein n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4C5I1_PYTIN) HSP 1 Score: 161 bits (407), Expect = 5.710e-41 Identity = 107/294 (36.39%), Postives = 156/294 (53.06%), Query Frame = 2
Query: 2 GTVAGFVECLASYPLDTIKTRMQAQPGAGS--------PMSYFFSAIKEDGARALYRGVSSRLAASMIAASVMFGTNGTLKELL--HADSRKPLTVPFMAAAAGTGVLEAFVYCPLELIKTRMQVVRGSP-VGVTVWSMTAKICRNPGPFKGLYRGLSPMMMRDIFGNTFFFGSYELSKQALAS----GSPD---EEASVVT---IALAGGVAGITFSAAIHPLDTVKSLIQADSMEAPKYRGVVHGFERAVAHGGGGFGGLAGLYRGLSPAIARAFVANAVLFLTFESVLDAL 820
G V G E + PL+T+K RMQ Q + P +++ G +LYRG S ++ S I+AS++FG G + + +P +AAA TG+ E+F+Y P E+IK RMQ ++ W ++ G +GLYRG+ P R++ GNT +F +YE K+ L SP E+A T IALAGG AG + + P+DT+KS+IQAD + P+Y+GVV ++ A GG +A YRG+SP++ RAF ANA+ FL FE+ L L
Sbjct: 40 GIVGGSCESIVGXPLETVKARMQTQHSTAAAGGRSFTGPFDCLQQTVRDGGVSSLYRGASPQILRSAISASLLFGLMGQFRYFYSKYVFEDRPRWA-LVAAATSTGLTESFLYTPFEIIKVRMQTQYAHRRTRISNWHCVQEVYNRTG-LRGLYRGMVPTAKREMLGNTAYFLAYETGKELLLDTFVRSSPHLTPEQAHWRTYQAIALAGGYAGFMYWLVVFPVDTIKSVIQADCLHTPQYKGVVDCAQKLYAEGG-----VARFYRGISPSLLRAFPANALTFLGFETCLSFL 326
BLAST of mRNA_H-elongata_contig5721.13180.1 vs. uniprot
Match: A0A024G8Y6_9STRA (Uncharacterized protein n=1 Tax=Albugo candida TaxID=65357 RepID=A0A024G8Y6_9STRA) HSP 1 Score: 161 bits (408), Expect = 6.540e-41 Identity = 103/299 (34.45%), Postives = 155/299 (51.84%), Query Frame = 2
Query: 2 GTVAGFVECLASYPLDTIKTRMQAQPGAGSPMSYFFS-------AIKEDGARALYRGVSSRLAASMIAASVMFGTNGTLKELLHADS--RKPLTVPFMAAAAGTGVLEAFVYCPLELIKTRMQVVRGSPVGVTVWSMTAKICRNPGPFKGLYRGLSPMMMRDIFGNTFFFGSYELSKQALAS--------------GSPDEEASVV-TIALAGGVAGITFSAAIHPLDTVKSLIQADSMEAPKYRGVVHGFERAVAHGGGGFGGLAGLYRGLSPAIARAFVANAVLFLTFESVLDALGR 826
G +AG E LA YPL+T+K RMQ QP + + Y+ ++++ G +LYRG ++ S I+ASV+FG G + + R+ + AA TG+ E+F+Y P E+IK RMQ T K +G YRG+ PM +++ GN +F +YE SK L S D+ IA AGG+AG+ + A+ P+DTVKS++QAD+++ PKYRGV+ E+ G + Y+G+SP + RAF ANA+ F+ FE+ L+ L +
Sbjct: 54 GIIAGSCEALAGYPLETVKARMQTQPRRANGLPYYSGMIDCVQQSVRDGGIASLYRGALPQIIRSAISASVLFGLMGQYRYYFDTQTLFRERPRFSLVFAAMSTGLTESFLYTPFEVIKIRMQTQCTHTRKRTSNVACMKAVYRQSGLRGFYRGMLPMAKKEMLGNAAYFVAYESSKTYLTELLYTMQSKHQTSDFDSKDQRFKTYGAIATAGGIAGLVYWLAVFPIDTVKSVMQADTLQNPKYRGVIDCCEKLYREQG-----VKRFYQGISPTLIRAFPANAITFVAFETSLNFLNQ 347
BLAST of mRNA_H-elongata_contig5721.13180.1 vs. uniprot
Match: K3X0U1_GLOUD (Uncharacterized protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3X0U1_GLOUD) HSP 1 Score: 160 bits (405), Expect = 1.230e-40 Identity = 109/290 (37.59%), Postives = 154/290 (53.10%), Query Frame = 2
Query: 2 GTVAGFVECLASYPLDTIKTRMQAQPGAG--SPMSYFFSAIKEDGARALYRGVSSRLAASMIAASVMFGTNGTLKELL--HADSRKPLTVPFMAAAAGTGVLEAFVYCPLELIKTRMQVVRGSPVGVTVWSM-TAKICRNPGPFKGLYRGLSPMMMRDIFGNTFFFGSYELSKQALASG--------SPDEE--ASVVTIALAGGVAGITFSAAIHPLDTVKSLIQADSMEAPKYRGVVHGFERAVAHGGGGFGGLAGLYRGLSPAIARAFVANAVLFLTFESVLDALGR 826
G V G E YPL+T+K RMQ Q P +IKE G +LYRG S ++ S I+ASV+FG G + + KP T +AA TG E+ +Y P E+IK RMQ + S V ++ K G +GLYRG P R++ GNT +F +YE +K AL SP++E + IALAGG AG+ + + P+DTVKS++QAD + P+Y+GVV ++ GG A RG+SP++ R+F ANAV F+ FE+ + L +
Sbjct: 51 GIVGGGCEAFVGYPLETVKARMQTQDAKAFTGPFDCLQKSIKEGGVGSLYRGASPQIFRSAISASVLFGLMGQYRYFYNNYVFDNKP-TYGLIAAGMSTGFTESILYTPFEIIKIRMQT-QNSHNRTRVSNLHVVKEVYGQGGIRGLYRGFVPYAQREMLGNTAYFMAYEYAKGALLDKFVHSAPKMSPEKEHIRTYQAIALAGGYAGLMYWIVVFPVDTVKSVMQADRLVNPQYKGVVDCVQQLYKEGG-----PARFVRGISPSLIRSFPANAVTFVAFETCMSFLNK 333
BLAST of mRNA_H-elongata_contig5721.13180.1 vs. uniprot
Match: A0A8K1CMY7_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CMY7_PYTOL) HSP 1 Score: 159 bits (401), Expect = 2.370e-40 Identity = 101/293 (34.47%), Postives = 156/293 (53.24%), Query Frame = 2
Query: 2 GTVAGFVECLASYPLDTIKTRMQAQPGAGS-----PMSYFFSAIKEDGARALYRGVSSRLAASMIAASVMFGTNGTLKELL--HADSRKPLTVPFMAAAAGTGVLEAFVYCPLELIKTRMQV-VRGSPVGVTVWSMTAKICRNPGPFKGLYRGLSPMMMRDIFGNTFFFGSYELSKQALASG--------SPDEE--ASVVTIALAGGVAGITFSAAIHPLDTVKSLIQADSMEAPKYRGVVHGFERAVAHGGGGFGGLAGLYRGLSPAIARAFVANAVLFLTFESVLDALGR 826
G V G E + YPL+T+K RMQ Q + P+ ++++ G +LYRG + ++ S I+AS++FG G + + KP T +AAA TG EA +Y P E+IK RMQ + ++ W ++ G +GLYRG P R++ GN+ +F +YE K+ L +P++E + IA AGG AG + A+ P+DTVKS++QAD ++ P+Y+GV+ + GG YRG+SP++ RAF ANA+ F+ FE+ L L +
Sbjct: 22 GIVGGGCEAVVGYPLETVKARMQTQKTSSGRSFSGPIDCLQQSVRDGGMASLYRGATPQIFRSAISASILFGLVGQYRYFYSKYVFEDKPRTA-LVAAATSTGFTEAILYTPFEIIKVRMQTQYANARTRISNWQCVREVYGQNG-IRGLYRGFIPTAQREMLGNSAYFLAYETGKEFLMDILVDNSPHLTPEQEHFRTYQAIAAAGGYAGFMYWLAVFPIDTVKSVMQADRLDKPRYQGVMDCCRKLYQEGG-----ATRFYRGISPSLIRAFPANAITFVAFETCLSFLDK 307
BLAST of mRNA_H-elongata_contig5721.13180.1 vs. uniprot
Match: A0A388L0S7_CHABU (Uncharacterized protein n=1 Tax=Chara braunii TaxID=69332 RepID=A0A388L0S7_CHABU) HSP 1 Score: 158 bits (400), Expect = 7.910e-40 Identity = 103/336 (30.65%), Postives = 157/336 (46.73%), Query Frame = 2
Query: 2 GTVAGFVECLASYPLDTIKTRMQAQPGAGSPMSYFFSA--------IKEDGARALYRGVSSRLAASMIAASVMFGTNGTLKELLHADSRKPLTV-PFMAAAAGTGVLEAFVYCPLELIKTRMQVVRG------------------------------SPVGVTVWSMTAK-----------------------ICRNPGPFKGLYRGLSPMMMRDIFGNTFFFGSYELSKQALASGSPDEEASVVTIALAGGVAGITFSAAIHPLDTVKSLIQADSMEAPKYRGVVHGFERAVAHGGGGFGGLAGLYRGLSPAIARAFVANAVLFLTFESVLDALG 823
GT AG + L +P DTIK ++Q+QP +S + +G R LY+G+ + LA + +V+F G ++ LL + + L+V M A G GV AFV CP EL+K R+Q +P G + S+ + + R+ G GLY+G+ P +MR++ GN FG YE++KQ LA G + ++ +AGGV G F A+++P D VKS+IQ D+ + PKY+G + F + A G + G+Y+G PA+AR+ ANA FL +E + LG
Sbjct: 15 GTFAGVTQLLVGHPFDTIKVKLQSQPVPAPGQQPMYSGAVDAVRKTVGAEGPRGLYKGMGAPLATVAVFNAVLFTARGQMEALLRSSPTENLSVYQQMVAGVGAGVAVAFVACPTELVKCRLQAQSALAGVPAAAGAATSAAPSFASLEPAIAASTAAPAGASAASIKSSPPPRPAAAAPIKMYNGPLDVARHVIRSEGGVLGLYKGMVPTLMREMPGNAAMFGGYEMTKQMLAGGRDTSQLGQGSLLIAGGVGGALFWASVYPTDVVKSVIQVDNYQNPKYKGTLDAFRKVYATEG-----MKGMYKGFGPAMARSVPANAACFLAYEMIRGMLG 345 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig5721.13180.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig5721.13180.1 >prot_H-elongata_contig5721.13180.1 ID=prot_H-elongata_contig5721.13180.1|Name=mRNA_H-elongata_contig5721.13180.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=255bp MQAQPGAGSPMSYFFSAIKEDGARALYRGVSSRLAASMIAASVMFGTNGTback to top mRNA from alignment at H-elongata_contig5721:3752..9611+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig5721.13180.1 ID=mRNA_H-elongata_contig5721.13180.1|Name=mRNA_H-elongata_contig5721.13180.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=5860bp|location=Sequence derived from alignment at H-elongata_contig5721:3752..9611+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig5721:3752..9611+ >mRNA_H-elongata_contig5721.13180.1 ID=mRNA_H-elongata_contig5721.13180.1|Name=mRNA_H-elongata_contig5721.13180.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1530bp|location=Sequence derived from alignment at H-elongata_contig5721:3752..9611+ (Himanthalia elongata Himel1 dioecious)back to top |