mRNA_H-elongata_contig5721.13180.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig5721.13180.1
Unique NamemRNA_H-elongata_contig5721.13180.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig5721.13180.1 vs. uniprot
Match: D8LLY5_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LLY5_ECTSI)

HSP 1 Score: 309 bits (791), Expect = 1.520e-96
Identity = 168/311 (54.02%), Postives = 213/311 (68.49%), Query Frame = 2
Query:    2 GTVAGFVECLASYPLDTIKTRMQAQPGAGSPMSY--FFSAIKEDGARALYRGVSSRLAASMIAASVMFGTNGTLKELLHADSRKPLTVPFMAAAAGTGVLEAFVYCPLELIKTRMQVVRGSPVGVTVWSMTAKICRNPGPFKGLYRGLSPMMMRDIFGNTFFFGSYELSKQALASGSP--------------------DEEASVVTIALAGGVAGITFSAAIHPLDTVKSLIQADSMEAPKYRGVVHGFERAVAHG-----------GGGFGGLA---GLYRGLSPAIARAFVANAVLFLTFESVLDALGR 826
            GT+ G  EC+A+YPLDT+KTRMQ    A S  ++  F +AI+EDGA ALYRG+SSR+ ASM+AASV+FG NGTLKE+  ADS +PL+  FM AA GTGVLEA  YCPLEL+KTRMQV+RGSP GVTVW+  A+I R+ G FKG Y+G S M++++  GNT +FGSYEL KQAL   S                      E+A +  I  AGG AG+ ++ A HP+DTVKSL+Q DS++AP+YRG + G+ +A+A G            G  GG+    GLYRGLSPAIARAF+ N+ LF+T+ESVLD LGR
Sbjct:   66 GTIGGLAECMAAYPLDTVKTRMQTSEAASSGGAFRCFSTAIREDGALALYRGMSSRVVASMLAASVLFGANGTLKEVFGADSSQPLSGRFMLAAMGTGVLEAIAYCPLELVKTRMQVLRGSPAGVTVWTTGAQIYRHHGIFKGSYKGFSSMLLKEGLGNTVYFGSYELCKQALGGRSTGGAVGSGXXXXXXXXXXXXHQEQAGIGPIVAAGGCAGVLYTVATHPIDTVKSLVQTDSIKAPRYRGFLDGWRQALAQGRRRHGVGRGDGAGAVGGVKAFLGLYRGLSPAIARAFLGNSALFVTYESVLDVLGR 376          
BLAST of mRNA_H-elongata_contig5721.13180.1 vs. uniprot
Match: UPI00129D825F (mitochondrial carnitine/acylcarnitine carrier-like protein n=1 Tax=Nymphaea colorata TaxID=210225 RepID=UPI00129D825F)

HSP 1 Score: 169 bits (429), Expect = 1.770e-44
Identity = 108/290 (37.24%), Postives = 154/290 (53.10%), Query Frame = 2
Query:    2 GTVAGFVECLASYPLDTIKTRMQAQPGA--GSPMSYF--FSAIKE----DGARALYRGVSSRLAASMIAASVMFGTNGTLKELLHADSRKPLTVPF-MAAAAGTGVLEAFVYCPLELIKTRMQV--VRGSPVGVTV-----WSMTAKICRNPGPFKGLYRGLSPMMMRDIFGNTFFFGSYELSKQALASGSPDEEASVVTIALAGGVAGITFSAAIHPLDTVKSLIQADSMEAPKYRGVVHGFERAVAHGGGGFGGLAGLYRGLSPAIARAFVANAVLFLTFESVLDALG 823
            GTV G  + +  +P DTIK ++Q+QP    G P  Y     A+K+    +G R LY+G+ + LA      +V+F   G ++ LL +    PL+V   M   AG GV  AF+ CP ELIK R+Q     GS  G  +       +   + ++ G   GL++GL P   R++ GN F FG YEL KQ +A G         ++ +AGG+AG +F   ++P D VKSLIQ D  + PKY G V  F++ +   G     L GLY+G  PA+AR+  ANA  FL +E    +LG
Sbjct:   11 GTVGGAAQLIVGHPFDTIKVKLQSQPAPLPGQPPKYSGAMDAVKQTVAAEGPRGLYKGMGAPLATVAAFNAVLFTARGQMEALLRSAPGVPLSVEQQMVCGAGAGVAVAFLACPTELIKCRLQAQSALGSTGGSAIKYNGPMDVAKHVLKSEGGTLGLFKGLVPTFAREVPGNAFMFGVYELVKQYIAGGKDTSSLGRGSLIVAGGLAGASFWVTVYPTDVVKSLIQVDDYKNPKYSGSVDAFKKVLRTEG-----LKGLYKGFGPAMARSVPANAACFLAYEITRASLG 295          
BLAST of mRNA_H-elongata_contig5721.13180.1 vs. uniprot
Match: A9TMK8_PHYPA (Predicted protein n=3 Tax=Physcomitrium patens TaxID=3218 RepID=A9TMK8_PHYPA)

HSP 1 Score: 169 bits (429), Expect = 2.370e-44
Identity = 107/300 (35.67%), Postives = 160/300 (53.33%), Query Frame = 2
Query:    2 GTVAGFVECLASYPLDTIKTRMQAQPGA--GSPMSYF--FSAIKE----DGARALYRGVSSRLAASMIAASVMFGTNGTLKELLHADSRKPLTV-PFMAAAAGTGVLEAFVYCPLELIKTRMQV---------------VRGSPVGVT--VWSMTAKICRNPGPFKGLYRGLSPMMMRDIFGNTFFFGSYELSKQALASGSPDEEASVVTIALAGGVAGITFSAAIHPLDTVKSLIQADSMEAPKYRGVVHGFERAVAHGGGGFGGLAGLYRGLSPAIARAFVANAVLFLTFESVLDALG 823
            GT AG  + L  +P DTIK ++Q+QP    G P  +     A+K+    +G + LY+G+ + LA   +  +V+F   G ++ LL       L+V   M A AG GV  + V CP EL+K R+Q                + G+P G     + +   + ++ G   GLY+GL+P +MR++ GN   FG+YE +KQ LA G    + S  ++  AGGVAG  F  +++P D +KS+IQ D    PKY+G +  F +  A  G     + GLYRG  PA+AR+  ANA  FL +E V ++LG
Sbjct:   12 GTFAGVAQLLVGHPFDTIKVKLQSQPAPLPGHPPKFSGAIDAVKQTLAAEGPKGLYKGMGAPLATVAVFNAVLFTARGQMEGLLRDSPGAHLSVGQQMVAGAGAGVACSMVACPTELVKCRLQAQSALATTVEIPVLAGIGGAPAGRYNGPFDVAKHVLKSEGGVLGLYKGLTPTLMREVPGNAAMFGAYEATKQYLAGGQDTSKLSRGSMLFAGGVAGAMFWVSVYPTDVIKSVIQVDDHRNPKYKGTMDAFRKVFAAEG-----VKGLYRGFGPAMARSVPANAACFLAYELVRESLG 306          
BLAST of mRNA_H-elongata_contig5721.13180.1 vs. uniprot
Match: A0A5D6XLB4_9STRA (Uncharacterized protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6XLB4_9STRA)

HSP 1 Score: 168 bits (426), Expect = 1.120e-43
Identity = 109/288 (37.85%), Postives = 159/288 (55.21%), Query Frame = 2
Query:    2 GTVAGFVECLASYPLDTIKTRMQAQPGAG--SPMSYFFSAIKEDGARALYRGVSSRLAASMIAASVMFGTNGTLKELL--HADSRKPLTVPFMAAAAGTGVLEAFVYCPLELIKTRMQVVRG-SPVGVTVWSMTAKICRNPGPFKGLYRGLSPMMMRDIFGNTFFFGSYELSKQAL-------ASGSPDEEASVVT---IALAGGVAGITFSAAIHPLDTVKSLIQADSMEAPKYRGVVHGFERAVAHGGGGFGGLAGLYRGLSPAIARAFVANAVLFLTFESVLDAL 820
            GTVAG  E +  YPL+T+K RMQ +       P+     +++E G  +LYRG S ++  S ++ASV+FG  G  +     +    KP     +AA   TG+ E+F+Y P E+IK RMQ     S   V+ W    ++  + G  +G+YRG+ P   R++ GNT +F +YE +K+ L       A     E+A V T   IALAGG AG  +   + P+DTVKS++QADS+  P+YRGV    ++    GG      A   RG+SP++ RAF ANAV F+ FE+ +  L
Sbjct:   44 GTVAGACEAVVGYPLETVKARMQTEKAQAFSGPLDCMRKSVREGGVASLYRGASPQIFRSAVSASVLFGLMGQYRHFYNTYVFDNKP-QFGLVAAGMSTGLTESFLYTPFEIIKIRMQTQHTHSRTRVSNWQCVKEVY-SQGGVRGMYRGVVPYAQREMLGNTAYFMAYEFAKEYLLERFVHRAPPMTPEKAHVRTYQAIALAGGYAGFMYWVVVFPVDTVKSVMQADSLTHPRYRGVWDCAQKLYQEGG-----PARFVRGISPSLLRAFPANAVTFVAFETCMSFL 324          
BLAST of mRNA_H-elongata_contig5721.13180.1 vs. uniprot
Match: UPI00053A3E10 (mitochondrial carnitine/acylcarnitine carrier-like protein n=3 Tax=Camelina sativa TaxID=90675 RepID=UPI00053A3E10)

HSP 1 Score: 161 bits (408), Expect = 1.930e-41
Identity = 100/295 (33.90%), Postives = 151/295 (51.19%), Query Frame = 2
Query:    2 GTVAGFVECLASYPLDTIKTRMQAQP----GAGSPMSYFFSAIKE----DGARALYRGVSSRLAASMIAASVMFGTNGTLKELLHADSRKPLTV-PFMAAAAGTGVLEAFVYCPLELIKTRMQVVRGSPVGVTVWSMTAKI------------CRNPGPFKGLYRGLSPMMMRDIFGNTFFFGSYELSKQALASGSPDEEASVVTIALAGGVAGITFSAAIHPLDTVKSLIQADSMEAPKYRGVVHGFERAVAHGGGGFGGLAGLYRGLSPAIARAFVANAVLFLTFESVLDALG 823
            GTV G  + +  +P DTIK ++Q+QP    G     S    A+K+    +G R L++G+ + LA      +V+F   G ++ L  +++  PLT+       AG G   AF+ CP ELIK R+Q   G     T  S+ A +             R+ G  +GL++GL P   R++ GN   F +YE  K+ LA GS        ++ +AGGVAG +F   ++P D VKS++Q D  + PKY G +  F + +   G     + GLY+G  PA+AR+  ANA  FL +E    +LG
Sbjct:   11 GTVGGAAQLIVGHPFDTIKVKLQSQPTPAPGQAPRYSGAIDAVKQTVAAEGPRGLFKGMGAPLATVAAFNAVLFTVRGQMEGLFRSEAGVPLTIRQQFVCGAGAGFAVAFLACPTELIKCRLQAQGGLARATTTGSVLAAVKYGGPMDVARHVLRSEGGTRGLFKGLVPTFAREVPGNAMMFAAYEAFKRFLAGGSDTSSLGQGSLIMAGGVAGASFWGIVYPTDVVKSVLQVDDYKNPKYTGSMDAFRKILKSEG-----VKGLYKGFGPAMARSVPANAACFLAYEMTRSSLG 300          
BLAST of mRNA_H-elongata_contig5721.13180.1 vs. uniprot
Match: A0A2D4C5I1_PYTIN (Uncharacterized protein n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4C5I1_PYTIN)

HSP 1 Score: 161 bits (407), Expect = 5.710e-41
Identity = 107/294 (36.39%), Postives = 156/294 (53.06%), Query Frame = 2
Query:    2 GTVAGFVECLASYPLDTIKTRMQAQPGAGS--------PMSYFFSAIKEDGARALYRGVSSRLAASMIAASVMFGTNGTLKELL--HADSRKPLTVPFMAAAAGTGVLEAFVYCPLELIKTRMQVVRGSP-VGVTVWSMTAKICRNPGPFKGLYRGLSPMMMRDIFGNTFFFGSYELSKQALAS----GSPD---EEASVVT---IALAGGVAGITFSAAIHPLDTVKSLIQADSMEAPKYRGVVHGFERAVAHGGGGFGGLAGLYRGLSPAIARAFVANAVLFLTFESVLDAL 820
            G V G  E +   PL+T+K RMQ Q    +        P       +++ G  +LYRG S ++  S I+AS++FG  G  +     +    +P     +AAA  TG+ E+F+Y P E+IK RMQ         ++ W    ++    G  +GLYRG+ P   R++ GNT +F +YE  K+ L       SP    E+A   T   IALAGG AG  +   + P+DT+KS+IQAD +  P+Y+GVV   ++  A GG     +A  YRG+SP++ RAF ANA+ FL FE+ L  L
Sbjct:   40 GIVGGSCESIVGXPLETVKARMQTQHSTAAAGGRSFTGPFDCLQQTVRDGGVSSLYRGASPQILRSAISASLLFGLMGQFRYFYSKYVFEDRPRWA-LVAAATSTGLTESFLYTPFEIIKVRMQTQYAHRRTRISNWHCVQEVYNRTG-LRGLYRGMVPTAKREMLGNTAYFLAYETGKELLLDTFVRSSPHLTPEQAHWRTYQAIALAGGYAGFMYWLVVFPVDTIKSVIQADCLHTPQYKGVVDCAQKLYAEGG-----VARFYRGISPSLLRAFPANALTFLGFETCLSFL 326          
BLAST of mRNA_H-elongata_contig5721.13180.1 vs. uniprot
Match: A0A024G8Y6_9STRA (Uncharacterized protein n=1 Tax=Albugo candida TaxID=65357 RepID=A0A024G8Y6_9STRA)

HSP 1 Score: 161 bits (408), Expect = 6.540e-41
Identity = 103/299 (34.45%), Postives = 155/299 (51.84%), Query Frame = 2
Query:    2 GTVAGFVECLASYPLDTIKTRMQAQPGAGSPMSYFFS-------AIKEDGARALYRGVSSRLAASMIAASVMFGTNGTLKELLHADS--RKPLTVPFMAAAAGTGVLEAFVYCPLELIKTRMQVVRGSPVGVTVWSMTAKICRNPGPFKGLYRGLSPMMMRDIFGNTFFFGSYELSKQALAS--------------GSPDEEASVV-TIALAGGVAGITFSAAIHPLDTVKSLIQADSMEAPKYRGVVHGFERAVAHGGGGFGGLAGLYRGLSPAIARAFVANAVLFLTFESVLDALGR 826
            G +AG  E LA YPL+T+K RMQ QP   + + Y+         ++++ G  +LYRG   ++  S I+ASV+FG  G  +      +  R+      + AA  TG+ E+F+Y P E+IK RMQ         T      K        +G YRG+ PM  +++ GN  +F +YE SK  L                 S D+       IA AGG+AG+ +  A+ P+DTVKS++QAD+++ PKYRGV+   E+     G     +   Y+G+SP + RAF ANA+ F+ FE+ L+ L +
Sbjct:   54 GIIAGSCEALAGYPLETVKARMQTQPRRANGLPYYSGMIDCVQQSVRDGGIASLYRGALPQIIRSAISASVLFGLMGQYRYYFDTQTLFRERPRFSLVFAAMSTGLTESFLYTPFEVIKIRMQTQCTHTRKRTSNVACMKAVYRQSGLRGFYRGMLPMAKKEMLGNAAYFVAYESSKTYLTELLYTMQSKHQTSDFDSKDQRFKTYGAIATAGGIAGLVYWLAVFPIDTVKSVMQADTLQNPKYRGVIDCCEKLYREQG-----VKRFYQGISPTLIRAFPANAITFVAFETSLNFLNQ 347          
BLAST of mRNA_H-elongata_contig5721.13180.1 vs. uniprot
Match: K3X0U1_GLOUD (Uncharacterized protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3X0U1_GLOUD)

HSP 1 Score: 160 bits (405), Expect = 1.230e-40
Identity = 109/290 (37.59%), Postives = 154/290 (53.10%), Query Frame = 2
Query:    2 GTVAGFVECLASYPLDTIKTRMQAQPGAG--SPMSYFFSAIKEDGARALYRGVSSRLAASMIAASVMFGTNGTLKELL--HADSRKPLTVPFMAAAAGTGVLEAFVYCPLELIKTRMQVVRGSPVGVTVWSM-TAKICRNPGPFKGLYRGLSPMMMRDIFGNTFFFGSYELSKQALASG--------SPDEE--ASVVTIALAGGVAGITFSAAIHPLDTVKSLIQADSMEAPKYRGVVHGFERAVAHGGGGFGGLAGLYRGLSPAIARAFVANAVLFLTFESVLDALGR 826
            G V G  E    YPL+T+K RMQ Q       P      +IKE G  +LYRG S ++  S I+ASV+FG  G  +     +    KP T   +AA   TG  E+ +Y P E+IK RMQ  + S     V ++   K     G  +GLYRG  P   R++ GNT +F +YE +K AL           SP++E   +   IALAGG AG+ +   + P+DTVKS++QAD +  P+Y+GVV   ++    GG      A   RG+SP++ R+F ANAV F+ FE+ +  L +
Sbjct:   51 GIVGGGCEAFVGYPLETVKARMQTQDAKAFTGPFDCLQKSIKEGGVGSLYRGASPQIFRSAISASVLFGLMGQYRYFYNNYVFDNKP-TYGLIAAGMSTGFTESILYTPFEIIKIRMQT-QNSHNRTRVSNLHVVKEVYGQGGIRGLYRGFVPYAQREMLGNTAYFMAYEYAKGALLDKFVHSAPKMSPEKEHIRTYQAIALAGGYAGLMYWIVVFPVDTVKSVMQADRLVNPQYKGVVDCVQQLYKEGG-----PARFVRGISPSLIRSFPANAVTFVAFETCMSFLNK 333          
BLAST of mRNA_H-elongata_contig5721.13180.1 vs. uniprot
Match: A0A8K1CMY7_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CMY7_PYTOL)

HSP 1 Score: 159 bits (401), Expect = 2.370e-40
Identity = 101/293 (34.47%), Postives = 156/293 (53.24%), Query Frame = 2
Query:    2 GTVAGFVECLASYPLDTIKTRMQAQPGAGS-----PMSYFFSAIKEDGARALYRGVSSRLAASMIAASVMFGTNGTLKELL--HADSRKPLTVPFMAAAAGTGVLEAFVYCPLELIKTRMQV-VRGSPVGVTVWSMTAKICRNPGPFKGLYRGLSPMMMRDIFGNTFFFGSYELSKQALASG--------SPDEE--ASVVTIALAGGVAGITFSAAIHPLDTVKSLIQADSMEAPKYRGVVHGFERAVAHGGGGFGGLAGLYRGLSPAIARAFVANAVLFLTFESVLDALGR 826
            G V G  E +  YPL+T+K RMQ Q  +       P+     ++++ G  +LYRG + ++  S I+AS++FG  G  +     +    KP T   +AAA  TG  EA +Y P E+IK RMQ     +   ++ W    ++    G  +GLYRG  P   R++ GN+ +F +YE  K+ L           +P++E   +   IA AGG AG  +  A+ P+DTVKS++QAD ++ P+Y+GV+    +    GG         YRG+SP++ RAF ANA+ F+ FE+ L  L +
Sbjct:   22 GIVGGGCEAVVGYPLETVKARMQTQKTSSGRSFSGPIDCLQQSVRDGGMASLYRGATPQIFRSAISASILFGLVGQYRYFYSKYVFEDKPRTA-LVAAATSTGFTEAILYTPFEIIKVRMQTQYANARTRISNWQCVREVYGQNG-IRGLYRGFIPTAQREMLGNSAYFLAYETGKEFLMDILVDNSPHLTPEQEHFRTYQAIAAAGGYAGFMYWLAVFPIDTVKSVMQADRLDKPRYQGVMDCCRKLYQEGG-----ATRFYRGISPSLIRAFPANAITFVAFETCLSFLDK 307          
BLAST of mRNA_H-elongata_contig5721.13180.1 vs. uniprot
Match: A0A388L0S7_CHABU (Uncharacterized protein n=1 Tax=Chara braunii TaxID=69332 RepID=A0A388L0S7_CHABU)

HSP 1 Score: 158 bits (400), Expect = 7.910e-40
Identity = 103/336 (30.65%), Postives = 157/336 (46.73%), Query Frame = 2
Query:    2 GTVAGFVECLASYPLDTIKTRMQAQPGAGSPMSYFFSA--------IKEDGARALYRGVSSRLAASMIAASVMFGTNGTLKELLHADSRKPLTV-PFMAAAAGTGVLEAFVYCPLELIKTRMQVVRG------------------------------SPVGVTVWSMTAK-----------------------ICRNPGPFKGLYRGLSPMMMRDIFGNTFFFGSYELSKQALASGSPDEEASVVTIALAGGVAGITFSAAIHPLDTVKSLIQADSMEAPKYRGVVHGFERAVAHGGGGFGGLAGLYRGLSPAIARAFVANAVLFLTFESVLDALG 823
            GT AG  + L  +P DTIK ++Q+QP         +S         +  +G R LY+G+ + LA   +  +V+F   G ++ LL +   + L+V   M A  G GV  AFV CP EL+K R+Q                                  +P G +  S+ +                        + R+ G   GLY+G+ P +MR++ GN   FG YE++KQ LA G    +    ++ +AGGV G  F A+++P D VKS+IQ D+ + PKY+G +  F +  A  G     + G+Y+G  PA+AR+  ANA  FL +E +   LG
Sbjct:   15 GTFAGVTQLLVGHPFDTIKVKLQSQPVPAPGQQPMYSGAVDAVRKTVGAEGPRGLYKGMGAPLATVAVFNAVLFTARGQMEALLRSSPTENLSVYQQMVAGVGAGVAVAFVACPTELVKCRLQAQSALAGVPAAAGAATSAAPSFASLEPAIAASTAAPAGASAASIKSSPPPRPAAAAPIKMYNGPLDVARHVIRSEGGVLGLYKGMVPTLMREMPGNAAMFGGYEMTKQMLAGGRDTSQLGQGSLLIAGGVGGALFWASVYPTDVVKSVIQVDNYQNPKYKGTLDAFRKVYATEG-----MKGMYKGFGPAMARSVPANAACFLAYEMIRGMLG 345          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig5721.13180.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LLY5_ECTSI1.520e-9654.02Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
UPI00129D825F1.770e-4437.24mitochondrial carnitine/acylcarnitine carrier-like... [more]
A9TMK8_PHYPA2.370e-4435.67Predicted protein n=3 Tax=Physcomitrium patens Tax... [more]
A0A5D6XLB4_9STRA1.120e-4337.85Uncharacterized protein n=1 Tax=Pythium brassicum ... [more]
UPI00053A3E101.930e-4133.90mitochondrial carnitine/acylcarnitine carrier-like... [more]
A0A2D4C5I1_PYTIN5.710e-4136.39Uncharacterized protein n=1 Tax=Pythium insidiosum... [more]
A0A024G8Y6_9STRA6.540e-4134.45Uncharacterized protein n=1 Tax=Albugo candida Tax... [more]
K3X0U1_GLOUD1.230e-4037.59Uncharacterized protein n=1 Tax=Globisporangium ul... [more]
A0A8K1CMY7_PYTOL2.370e-4034.47Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
A0A388L0S7_CHABU7.910e-4030.65Uncharacterized protein n=1 Tax=Chara braunii TaxI... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig5721contigH-elongata_contig5721:3752..9611 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score280.0
Seed ortholog evalue1.1e-72
Seed eggNOG ortholog2880.D8LLY5
KEGG koko:K15109
KEGG TC2.A.29.8
KEGG Pathwayko04714,map04714
EggNOG free text desc.Belongs to the mitochondrial carrier (TC 2.A.29) family
EggNOG OGsKOG0762@1,KOG0762@2759
COG Functional cat.U
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko02000
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionMitochondrial carrier domain
Ec32 orthologEc-14_002120.1
Exons8
Model size1805
Cds size765
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig5721.13180.1prot_H-elongata_contig5721.13180.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig5721 3816..8580 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930929.5705464-UTR-H-elongata_contig5721:3751..38151622930929.5705464-UTR-H-elongata_contig5721:3751..3815Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig5721 3752..3815 +
1691679628.9424043-UTR-H-elongata_contig5721:3751..38151691679628.9424043-UTR-H-elongata_contig5721:3751..3815Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig5721 3752..3815 +
1622930929.7001953-UTR-H-elongata_contig5721:8580..93441622930929.7001953-UTR-H-elongata_contig5721:8580..9344Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig5721 8581..9344 +
1691679629.0219762-UTR-H-elongata_contig5721:8580..93441691679629.0219762-UTR-H-elongata_contig5721:8580..9344Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig5721 8581..9344 +
1622930929.720088-UTR-H-elongata_contig5721:9399..96111622930929.720088-UTR-H-elongata_contig5721:9399..9611Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig5721 9400..9611 +
1691679629.0299208-UTR-H-elongata_contig5721:9399..96111691679629.0299208-UTR-H-elongata_contig5721:9399..9611Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig5721 9400..9611 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930929.589388-CDS-H-elongata_contig5721:3815..38981622930929.589388-CDS-H-elongata_contig5721:3815..3898Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig5721 3816..3898 +
1691679628.9548175-CDS-H-elongata_contig5721:3815..38981691679628.9548175-CDS-H-elongata_contig5721:3815..3898Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig5721 3816..3898 +
1622930929.6060011-CDS-H-elongata_contig5721:4207..43071622930929.6060011-CDS-H-elongata_contig5721:4207..4307Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig5721 4208..4307 +
1691679628.9641285-CDS-H-elongata_contig5721:4207..43071691679628.9641285-CDS-H-elongata_contig5721:4207..4307Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig5721 4208..4307 +
1622930929.6248627-CDS-H-elongata_contig5721:5370..54661622930929.6248627-CDS-H-elongata_contig5721:5370..5466Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig5721 5371..5466 +
1691679628.9731538-CDS-H-elongata_contig5721:5370..54661691679628.9731538-CDS-H-elongata_contig5721:5370..5466Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig5721 5371..5466 +
1622930929.6387653-CDS-H-elongata_contig5721:6021..60991622930929.6387653-CDS-H-elongata_contig5721:6021..6099Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig5721 6022..6099 +
1691679628.9824195-CDS-H-elongata_contig5721:6021..60991691679628.9824195-CDS-H-elongata_contig5721:6021..6099Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig5721 6022..6099 +
1622930929.6503742-CDS-H-elongata_contig5721:6986..70731622930929.6503742-CDS-H-elongata_contig5721:6986..7073Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig5721 6987..7073 +
1691679628.9953067-CDS-H-elongata_contig5721:6986..70731691679628.9953067-CDS-H-elongata_contig5721:6986..7073Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig5721 6987..7073 +
1622930929.6648629-CDS-H-elongata_contig5721:7811..79101622930929.6648629-CDS-H-elongata_contig5721:7811..7910Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig5721 7812..7910 +
1691679629.0065534-CDS-H-elongata_contig5721:7811..79101691679629.0065534-CDS-H-elongata_contig5721:7811..7910Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig5721 7812..7910 +
1622930929.6820307-CDS-H-elongata_contig5721:8358..85801622930929.6820307-CDS-H-elongata_contig5721:8358..8580Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig5721 8359..8580 +
1691679629.0142741-CDS-H-elongata_contig5721:8358..85801691679629.0142741-CDS-H-elongata_contig5721:8358..8580Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig5721 8359..8580 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig5721.13180.1

>prot_H-elongata_contig5721.13180.1 ID=prot_H-elongata_contig5721.13180.1|Name=mRNA_H-elongata_contig5721.13180.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=255bp
MQAQPGAGSPMSYFFSAIKEDGARALYRGVSSRLAASMIAASVMFGTNGT
LKELLHADSRKPLTVPFMAAAAGTGVLEAFVYCPLELIKTRMQVVRGSPV
GVTVWSMTAKICRNPGPFKGLYRGLSPMMMRDIFGNTFFFGSYELSKQAL
ASGSPDEEASVVTIALAGGVAGITFSAAIHPLDTVKSLIQADSMEAPKYR
GVVHGFERAVAHGGGGFGGLAGLYRGLSPAIARAFVANAVLFLTFESVLD
ALGR*
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mRNA from alignment at H-elongata_contig5721:3752..9611+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig5721.13180.1 ID=mRNA_H-elongata_contig5721.13180.1|Name=mRNA_H-elongata_contig5721.13180.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=5860bp|location=Sequence derived from alignment at H-elongata_contig5721:3752..9611+ (Himanthalia elongata Himel1 dioecious)
AGGTACCGTGGCGGGGTTTGTCGAGTGCCTCGCATCTTACCCCCTCGACA CAATCAAGACTCGGATGCAGGCACAACCGGGCGCAGGCAGCCCCATGAGC TACTTCTTTAGCGCGATCAAGGAAGACGGCGCCAGGGCCTTGTACCGGTG AGTAGAGCCCCAAAGCGAGGATCCCTTCGCGCCGATTTCTCCCCCCCCTC CCCCCCAATATATATGGAACGATTTTTGCCAACGTGAACGATTTTTGCCA ACGTGGCTTGCGCACGTCGCCCCCTCAGGTCAGCTCCGTCATTGGCGGAT CGCTGGGTCTGTTCAGTACTCGGAATCAGGTGTCGGTGTTACTATCAGCC CCCTACTCCTTTCTGATCTGAATGGTATAGCAAACTGACCCCCTACCACT ATCACTATCACGCAACCCTGGTTATAGACTCCCGCTGCTTATCGGATTTC TCGCAGGGGGGTCTCTTCCAGGCTCGCGGCGAGCATGATCGCGGCCTCGG TCATGTTCGGCACCAACGGGACCCTGAAGGAGTTGCTCCACGCCGATTCG CGAAAGGTACGGCACAGTGGGATGCATATGCTTCTTCTCAGGGGTCCGAT GGCCGCCCGCTGTCCATGCGGTATTACCCTGCCCGCCCGGCATCACCCTT ACGCTTTGATCTTTGAATTCTCGCCCTGCGACTGCACCGCCCGCAGCAAA TATGAACGGCCGTGGAAAGCGTTTGCAGGATTGCCGCGCTCTTGATCGCT GCTTAGCCCTGAGTTACGCTGCGCTGGATTGCGTTACGTTACGTCATGAC GTGAACGTTGGTCGTGGGGTTCCCCTGGCGTTCGTGTCTATGTGTGTTTG TGGGTGATCGAGAGAAAACGAGTAGAAGAAAAACACTCCCTCGAGGAGAG ATAAATGTGGCAGCATGTCTATGGCAAGAATAATTCGATGAATGTATGAT GATTTTGCAAGGCGCCTCTGTCTGGGGTCGAGGGGGGGGGGGGTAGGTGC GTTGTTCCCCGCGTTAGTATCGCGGGGGCGGACGTTGGCCGCTGGGATTG TGGGGCTCTTGGAACAATCAGAAGACGAACCAGTTCCCCGCGCCCCCCAT TTTATATTCCCTCTCCACATACAGCTATGGAGTGGGTTTACAAAATATTC ATGGGCATACAACCATCCAAAAGTCTGAATGGCCTTGATATCCGAGCCGG AATTCTGGGTGGTCTAGCCCAGTCTCCTGGTTGGTCTGGATAACCTGATC CAGACGTCTGGATGATCTGGTCGAGGCAATTTAGGCCAATTACATCTTTG GATAGCCTGATTGATCGGGGCCTAGACTTCCGGGTGGTATCGGCGATCTG GCCTTGCGCCATGAAAAATTACGTCCCAAACTAAGAATTGGATAGTACGG GGTGGATATTTTCCCAATCCCTTGTGTTCCCAGACTGGATGATTAGCTAG GCGTTCAAATACCGTGCGCTGTTCTCTTGGGGGGACGTAATGTGTTCGAC TGACTGCGTTTACTCTTGATTGTACCGTGTGTTGAGCTACCGCGGCGTTG TTTGAGCCTCTTCTTCCTCGTCTCCCTTTCGCCTTCTCCCTTATTTCCTG ACGCCATGCACGGCGGCAGCCCCTGACCGTCCCCTTCATGGCGGCCGCGG CGGGCACGGGGGTTCTAGAGGCGTTTGTTTACTGTCCCCTCGAGCTCATT AAGACTCGCATGCAGGTGAGAGCCTTGACGGCGAACGGGCTCGTACACAG GGATGGCCAAGTATGGGATAGATTCTTGGTCCGGCTTGCTCGTTCGCCGA GATGTGGCGTAAGCGCTTGTGAGAGGCGTGAGACACCATGAAAGCGAGAG CGCGGGGGGGAGTGGGGGAGGGGGATCTGCAACGAACATATACATTCTTT CATTGCTGGGGTGTTGGAAAACATCGAGGGATTACCGCAGCGGAACGTGG CGCTGCGTGAAGTTTGACTGATGTGTATAGCACAGTGTGCCACGGACACT CAGCAGGCGTGTTTAAATGTTAACATCATAAATCTTGTCCTTCGGGGGGC GTACGTGCGCGCGCCACCGGGCAGCGCTTTGCCTCAAGCGCTCTATTGTT TGATTGATTGGTCTCGCTTTAACCAAACAAGACTTTCTCACTGGTCCACA TCTCGGGGGTAGGTAGCTCCCCGCACGGCATCAGAGACAGAACTGGAAAA TGATCACTCATCATGGTGCGCCCCCCGTTCACCTTCGCGCGCGATGGTGG CCGAGTCTTCTGTTTCGCAGGTGGTCAGGGGGTCGCCGGTAGGGGTGACA GTCTGGTCGATGACAGCGAAAATCTGCCGGAACCCCGGGCCCTTTAAGGT ACACACACAAACCGTAAAGCAACGCCTCGATGCCTTGGACGTTTCGCGGG GTCTCAACCGAAGGGGATCAATCATGTTTCCGTACGTGTGTGTATGTTTT GTTTTGGGGAGGGGGGGGGAGGGTGTAGACTAGGGTTGACAGCCGCTTGA GCGTTGAGAACGTGGTGTGAAATGACGTCATCGCAGTGGAGGAGGAAGGA CACGTGGCCCCAACAGGCATTTGGCTGCACGCTGCACACAATGCACACTG GAGCTTTTTTTTGTCTTTTGTGTGTGTGTATGTTCGCGGTTGGTGAAACC CGCACGCACACGATTCCAACGATCGGCGGCGCGCGATGTCTGTCCTATTT TGGATGTTTTTTTAACATGGTTGAGGCAGTTTGTTTTGCTCCAGTTCGCT GTGGCGGCCGTGATCGTGACCTCAGCGCGCTAGGCGTCCCTCCGCGTCAC CGCAGATGTGATTCTGCTCGTAATAGTCTCCTTCAGATGGCGAAACAACC CACGGTTGATGGTGTGTCCTAGCGTTCACCATCTGAAGAGGGGAGTGGGG CAGTGTTGCGGTCCAGTCTCGACCTCGACTTTTTTCGCTCTCTGACCGTT CAACATCCCCCGAATTGACTTAGACACGATAAGAAGAAAAACAAAATGCG CCACCTTTGACCAAATAGGAAAGGAACGATTGGTCCATCGATCGCGTAGG AGTAATGCTCCCGTCTTCCCGAGGGTGCGTGGTCAATGGTCAATATAGCA AAGGCACGCAAAACCTGAGCACGACCCCCTTCCCCCGCCCCCCACCAATA GAGTACATTATACCCTTACCCTACAGGGTAGTCTGTAAACACGTTTCTCG ATTTCCACTTTCCGCTCGCTTGTTTTCCTCGGCAGGGCCTCTACAGGGGG CTGTCGCCGATGATGATGCGAGATATCTTTGGCAATACGTTCTTCTTCGG CTCATACGAGCTTAGCAAGCAGGTGCGGCGTCTGGAATGCCGCCAAATTT CGACTGCTATCGCTGTTTTTCGTTCGTATATTGGTTTCCCTCGAATGCTG TTCTCCGCGGTGACTCGAATTTATTTGGTTTGATCTGGTTTGGTTTTATT CTATGTTATCCGAAAGGCGGCTGCGCCGGCGTACCGTAGGAAGGCGTAGA AAAAAAAAGACGTTTGTGAATTGATCCCGCGAAATCCCAGCTGCTTCATT GCATTGGTCCTTAAACCAACCTTATGCCGCACGGTATGTCTTTCAGAAGT TCAAGAGCACGAAATAGCCTTTCATACGGCAGTAACACGAATCCAGCCGA AAACGTTTGTTTGAAACAAATATATTTAACCCTTTTTTTTCGGGTATAGT AGGATGAAATCTACCGGCAGAAACACACGTTTTTATAGTTTTCGGTGAAT TCCTGCCGCCGAACCCTTCTCAAATCCACGACGTTTCTGACCAGAAGTGA GATAGAGAGGCGCAGTGCAGTGCAGTTCAGTGCTGAAAACAATTCAAGGT AAAATAGTTTGATCTCCCCCACCGCACCCGTTCCAAGCTCCGCTTCTATG AATAACATGGGTCACCGAAGATTATTTTTTTGTAAAAAATAGAAGAAACA AGATGTGGATGCGGAAATATAATCTGCTTGCTGTGTCTTGATTTTAAAAC AATTTCTTTCTTCATGAGCCCTGAGCCGCAACACGCCTCCTTAAAAACAA ACATCCGCAGGCGCTTGCGAGTGGTTCCCCGGACGAAGAGGCGAGCGTCG TGACGATTGCACTAGCGGGGGGCGTGGCGGGAATAACCTTTTCAGCCGCT ATTCACCCCGTGAGAGCCATCACCACCGCGCGATAATTCCCCAAACCCAA CGACTGGTGGATCACAGCACCGCGCGGGACTGTGAATTACAGTGCCATTA CTAAGAGCCGTCGCGCGCGCGAGAGGGTGGGATTTCTCTTCTCCCTATGT GCGTTTTGATTATTGGATTCAGTGGGGTAAAAGAAGCTTGCATCATCTTT ACCCGCTCCCTCATTCCCCTCTTTACCTGAATCGGTCGCACTCCCCCCCC CCCCCCCAACCCCCCCCACGGCACCCCACCCCCCGCCACCCCCACCCCCC GCCCCCGCCCCCCACTCCCCCNNNNNNNNNNAAAAGAAGGTTGCATCATC TTTACCCGCTCCCTCCGTCCCCGCTTCCCCTGAAGCGGCCGCCCTCCCCC CCCCCCCCCCACCCCTCCCTCGCGTCATCCAACTCCTGCTGCCGGGACCG ATCACAGCTTGACACGGTGAAGTCCCTGATCCAGGCAGACTCCATGGAGG CTCCCAAGTACCGAGGAGTTGTTCATGGGTTCGAGCGCGCCGTGGCTCAC GGGGGCGGCGGTTTCGGGGGCTTGGCGGGCCTCTACCGAGGGCTTTCTCC CGCCATCGCCCGGGCCTTCGTGGCGAACGCCGTCCTGTTTCTGACGTTTG AATCGGTGCTCGACGCCTTGGGACGATGAAGCTCTCGCTTTCATCCACGG CATTTGATAGGGGCGTTATCGTATTGTGTTGTATATTTTACTATATCAGT TTTATTGTGTGTACACCGTCGTCGATAGGTAGTGGTGGTTGTTGTTGGTC TCCCTTTTAGCAGAAGGATAAACCGGATTTGGTTGCCTTCAGCTCGTGAT CAGCTAACAGGGAAAATAATTTTCCCTTTTCCCCGTTCACGCTTGAGAAT TTGGTCTCGCGAGACAGTATCAGCCCTCCCATCCCGCGTCACCCCATCCT CTCAAGCCAGGCTGAATATGGTGCTTACTCCCGGGATCCTCTCGATCCTC TCGTTTGTATGGTGTACTGTCGCCTGCTTCTCGGAAAGAGGAAAATATAC TATTGCTTGATTCGGGATCGTTGGACCATTGCGGTGGTCGTGTAGGCAGG TTGATTGAGTGGCTGAGATAAATCAGGTCGAGCTAAGAATACAAGAACGA TTTACGCGGGGCGAGAATTTTTCAGACCGAGGATGCGGGCCTTCCCTTTC TCCCGGGCGGTCCTGTCTCATAAAGAGAAGATATTTAGTAAGAAAGGAGG CTTTGTTTTGCTTGTGTATGTTGAGTGTTTAACACGGCGGAAACCCTGAG GCGTGTTTTGTTGTAATACCCCAATGGCTTTTAAACTAATCGACAATTTT ATTGCCTATCGTCGGATTTTGTGCCGATTTTATGGGAGCAATCATCCCAT GCGTGGTTTGATCGGTGATAATTACGCATAGGGCAAGGTCTACACTACCC CCGCATGAACACGCTGTCAATACCACGTTACTACGGAGGGAACCAAGTGC ACACTTCTCCCTGTCGCTCCTGATTATTATTTAAAACATATGAACTCATT AGAACCCTCCGAGTAGTCTAGGAGACCAACTATCGTCAGGTTCGAATGAG AACATTTTTACTACATTTAAGCATAAATTTGTCTTAAGTGTATTATGGCC TAACCTAAAGGGGAGTTGACAGTAAAACCAGCATATTTAGATTATTTTTA ACTGAAGGGA
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Coding sequence (CDS) from alignment at H-elongata_contig5721:3752..9611+

>mRNA_H-elongata_contig5721.13180.1 ID=mRNA_H-elongata_contig5721.13180.1|Name=mRNA_H-elongata_contig5721.13180.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1530bp|location=Sequence derived from alignment at H-elongata_contig5721:3752..9611+ (Himanthalia elongata Himel1 dioecious)
ATGCAGGCACAACCGGGCGCAGGCAGCCCCATGAGCTACTTCTTTAGCGC
GATCAAGGAAGACGGCGCCAGGGCCTTGTACCGATGCAGGCACAACCGGG
CGCAGGCAGCCCCATGAGCTACTTCTTTAGCGCGATCAAGGAAGACGGCG
CCAGGGCCTTGTACCGGGGGGTCTCTTCCAGGCTCGCGGCGAGCATGATC
GCGGCCTCGGTCATGTTCGGCACCAACGGGACCCTGAAGGAGTTGCTCCA
CGCCGATTCGCGAAAGGGGGGTCTCTTCCAGGCTCGCGGCGAGCATGATC
GCGGCCTCGGTCATGTTCGGCACCAACGGGACCCTGAAGGAGTTGCTCCA
CGCCGATTCGCGAAAGCCCCTGACCGTCCCCTTCATGGCGGCCGCGGCGG
GCACGGGGGTTCTAGAGGCGTTTGTTTACTGTCCCCTCGAGCTCATTAAG
ACTCGCATGCAGCCCCTGACCGTCCCCTTCATGGCGGCCGCGGCGGGCAC
GGGGGTTCTAGAGGCGTTTGTTTACTGTCCCCTCGAGCTCATTAAGACTC
GCATGCAGGTGGTCAGGGGGTCGCCGGTAGGGGTGACAGTCTGGTCGATG
ACAGCGAAAATCTGCCGGAACCCCGGGCCCTTTAAGGTGGTCAGGGGGTC
GCCGGTAGGGGTGACAGTCTGGTCGATGACAGCGAAAATCTGCCGGAACC
CCGGGCCCTTTAAGGGCCTCTACAGGGGGCTGTCGCCGATGATGATGCGA
GATATCTTTGGCAATACGTTCTTCTTCGGCTCATACGAGCTTAGCAAGCA
GGGCCTCTACAGGGGGCTGTCGCCGATGATGATGCGAGATATCTTTGGCA
ATACGTTCTTCTTCGGCTCATACGAGCTTAGCAAGCAGGCGCTTGCGAGT
GGTTCCCCGGACGAAGAGGCGAGCGTCGTGACGATTGCACTAGCGGGGGG
CGTGGCGGGAATAACCTTTTCAGCCGCTATTCACCCCGCGCTTGCGAGTG
GTTCCCCGGACGAAGAGGCGAGCGTCGTGACGATTGCACTAGCGGGGGGC
GTGGCGGGAATAACCTTTTCAGCCGCTATTCACCCCCTTGACACGGTGAA
GTCCCTGATCCAGGCAGACTCCATGGAGGCTCCCAAGTACCGAGGAGTTG
TTCATGGGTTCGAGCGCGCCGTGGCTCACGGGGGCGGCGGTTTCGGGGGC
TTGGCGGGCCTCTACCGAGGGCTTTCTCCCGCCATCGCCCGGGCCTTCGT
GGCGAACGCCGTCCTGTTTCTGACGTTTGAATCGGTGCTCGACGCCTTGG
GACGATGACTTGACACGGTGAAGTCCCTGATCCAGGCAGACTCCATGGAG
GCTCCCAAGTACCGAGGAGTTGTTCATGGGTTCGAGCGCGCCGTGGCTCA
CGGGGGCGGCGGTTTCGGGGGCTTGGCGGGCCTCTACCGAGGGCTTTCTC
CCGCCATCGCCCGGGCCTTCGTGGCGAACGCCGTCCTGTTTCTGACGTTT
GAATCGGTGCTCGACGCCTTGGGACGATGA
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