mRNA_H-elongata_contig5721.13179.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig5721.13179.1
Unique NamemRNA_H-elongata_contig5721.13179.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig5721.13179.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig5721contigH-elongata_contig5721:763..1196 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size434
Cds size432
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930929.52212-CDS-H-elongata_contig5721:762..11941622930929.52212-CDS-H-elongata_contig5721:762..1194Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig5721 763..1194 +
1691679628.9318726-CDS-H-elongata_contig5721:762..11941691679628.9318726-CDS-H-elongata_contig5721:762..1194Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig5721 763..1194 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig5721.13179.1prot_H-elongata_contig5721.13179.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig5721 763..1194 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig5721.13179.1

>prot_H-elongata_contig5721.13179.1 ID=prot_H-elongata_contig5721.13179.1|Name=mRNA_H-elongata_contig5721.13179.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=144bp
VINLISGLLDTVTVTVRVTARVTASQRLRERCPASSSIVPVYDYRLFIAT
PGNLDFLIKKLILQCLYYVDGSGAWSYLLGTSNLGDISRVSNIMTTNRGD
NPEGASSRSWQGDYTTVLLSSSRLDEDHRGECDDHALKITCLST
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mRNA from alignment at H-elongata_contig5721:763..1196+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig5721.13179.1 ID=mRNA_H-elongata_contig5721.13179.1|Name=mRNA_H-elongata_contig5721.13179.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=434bp|location=Sequence derived from alignment at H-elongata_contig5721:763..1196+ (Himanthalia elongata Himel1 dioecious)
GTTATCAATCTGATTTCTGGTCTTCTTGACACTGTTACTGTTACTGTTAG
AGTTACGGCTAGAGTTACGGCAAGCCAACGTCTTCGGGAAAGATGCCCCG
CGAGTAGCTCTATAGTGCCGGTATACGACTATAGACTATTCATAGCTACT
CCAGGTAATTTAGACTTCCTGATAAAAAAACTCATTCTCCAATGCTTATA
TTATGTTGATGGCAGCGGAGCCTGGAGCTACTTACTAGGCACCAGCAACC
TAGGCGATATAAGTCGGGTCTCAAATATTATGACCACGAATCGCGGCGAC
AACCCCGAGGGGGCTTCGAGTCGCTCCTGGCAAGGCGACTACACGACGGT
CCTCTTGTCAAGTAGTCGTCTGGATGAAGATCACCGGGGCGAGTGTGATG
ACCATGCTCTCAAGATTACTTGTCTCTCAACCTC
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Coding sequence (CDS) from alignment at H-elongata_contig5721:763..1196+

>mRNA_H-elongata_contig5721.13179.1 ID=mRNA_H-elongata_contig5721.13179.1|Name=mRNA_H-elongata_contig5721.13179.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=864bp|location=Sequence derived from alignment at H-elongata_contig5721:763..1196+ (Himanthalia elongata Himel1 dioecious)
GTTATCAATCTGATTTCTGGTCTTCTTGACACTGTTACTGTTACTGTTAG
AGTTACGGCTAGAGTTACGGCAAGCCAACGTCTTCGGGAAAGATGCCCCG
CGAGTAGCTCTATAGTGCCGGTATACGACTATAGACTATTCATAGCTACT
CCAGGTAATTTAGACTTCCTGATAAAAAAACTCATTCTCCAATGCTTATA
TTATGTTGATGGCAGCGGAGCCTGGAGCTACTTACTAGGCACCAGCAACC
TAGGCGATATAAGTCGGGTCTCAAATATTATGACCACGAATCGCGGCGAC
AACCCCGAGGGGGCTTCGAGTCGCTCCTGGCAAGGCGACTACACGACGGT
CCTCTTGTCAAGTAGTCGTCTGGATGAAGATCACCGGGGCGAGTGTGATG
ACCATGCTCTCAAGATTACTTGTCTCTCAACCGTTATCAATCTGATTTCT
GGTCTTCTTGACACTGTTACTGTTACTGTTAGAGTTACGGCTAGAGTTAC
GGCAAGCCAACGTCTTCGGGAAAGATGCCCCGCGAGTAGCTCTATAGTGC
CGGTATACGACTATAGACTATTCATAGCTACTCCAGGTAATTTAGACTTC
CTGATAAAAAAACTCATTCTCCAATGCTTATATTATGTTGATGGCAGCGG
AGCCTGGAGCTACTTACTAGGCACCAGCAACCTAGGCGATATAAGTCGGG
TCTCAAATATTATGACCACGAATCGCGGCGACAACCCCGAGGGGGCTTCG
AGTCGCTCCTGGCAAGGCGACTACACGACGGTCCTCTTGTCAAGTAGTCG
TCTGGATGAAGATCACCGGGGCGAGTGTGATGACCATGCTCTCAAGATTA
CTTGTCTCTCAACC
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