mRNA_H-elongata_contig57174.13174.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig57174.13174.1 vs. uniprot
Match: D7FS78_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FS78_ECTSI) HSP 1 Score: 170 bits (431), Expect = 1.560e-47 Identity = 97/203 (47.78%), Postives = 117/203 (57.64%), Query Frame = 2
Query: 2 REFLGMAGLCGFVISGLQTFYLEREAISEVEWTPSIVLFTAMYSLSLTGLYSWTSFFLQGGDAAMFNLSLLTSDVYALIFAFFIEHAGPNWIYFAGFGVIFVGLVLYHSQPVPTLAESRRLQLSNDGL--RHWRVEDGERGRWFAGQPGCWLTSCLSCDKRPHCSLNARESSGSNSNIDCYTTFGDLAIFEQVEVGTMPSTPN 604
REFLGMAGL G VISG+QT LE++ ++EVEWT S+VLFT Y+LSL+ LYSWTS FLQ GDAAMFNLSLLTSDVYAL+F+ +EHA P+W+YF F VIF GLV+YH QP PT AE DG W E + G G + + RE SG ++ TF + V P N
Sbjct: 237 REFLGMAGLFGTVISGVQTLALEKQLLAEVEWTRSVVLFTFGYALSLSVLYSWTSLFLQAGDAAMFNLSLLTSDVYALLFSVLVEHATPHWLYFVAFVVIFCGLVVYHGQPPPTCAEPLPRLALVDGTPGSSWSREGDDCGGHKRGTGRAFF------------GMQRRECSGESAGTSSTATFCSSELSPGASVSPSPPAKN 427
BLAST of mRNA_H-elongata_contig57174.13174.1 vs. uniprot
Match: K3W9Z4_GLOUD (Uncharacterized protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3W9Z4_GLOUD) HSP 1 Score: 108 bits (269), Expect = 1.110e-24 Identity = 54/113 (47.79%), Postives = 75/113 (66.37%), Query Frame = 2
Query: 5 EFLGMAGLCGFVISGLQTFYLEREAISEVEWTPSIVLFTAMYSLSLTGLYSWTSFFLQGGDAAMFNLSLLTSDVYALIFAFFIEHAGPNWIYFAGFGVIFVGLVLYHSQPVPT 343
EFLGM GLCGFVIS LQ E + + E++WT VL Y +L +Y+ TS FL+ GDAA+FNLSLLTSD +A++ A ++ + +W+YF GF +I GL++Y+ PT
Sbjct: 192 EFLGMIGLCGFVISSLQAVAFEGDVLREIQWTTPSVLCLLGYIGTLFLMYTCTSVFLKDGDAAVFNLSLLTSDFFAVVAAKYLFNEELSWLYFVGFSMIIAGLLIYNRSDAPT 304
BLAST of mRNA_H-elongata_contig57174.13174.1 vs. uniprot
Match: A0A8K1CBH7_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CBH7_PYTOL) HSP 1 Score: 108 bits (269), Expect = 1.280e-24 Identity = 53/121 (43.80%), Postives = 81/121 (66.94%), Query Frame = 2
Query: 5 EFLGMAGLCGFVISGLQTFYLEREAISEVEWTPSIVLFTAMYSLSLTGLYSWTSFFLQGGDAAMFNLSLLTSDVYALIFAFFIEHAGPNWIYFAGFGVIFVGLVLYHSQPVPTLAESRRLQ 367
EFLGM GLCGFVIS +Q + E I+ +W+ VL Y ++L +YS+TS F++ GDAA+FNLSLLTSD +A++ A F+ + + +YF GF +I +G+V+Y+ P PT + +++
Sbjct: 202 EFLGMVGLCGFVISSIQAYLFEGAVIAHADWSSGSVLCLLGYVVTLFVMYSFTSVFMKTGDAAVFNLSLLTSDFFAVVAARFLFNEHLSSLYFVGFTMIVIGIVIYNRSPPPTTSLDDKME 322
BLAST of mRNA_H-elongata_contig57174.13174.1 vs. uniprot
Match: A0A7S0ZXT3_NOCSC (Hypothetical protein n=1 Tax=Noctiluca scintillans TaxID=2966 RepID=A0A7S0ZXT3_NOCSC) HSP 1 Score: 107 bits (268), Expect = 2.030e-24 Identity = 54/121 (44.63%), Postives = 76/121 (62.81%), Query Frame = 2
Query: 2 REFLGMAGLCGFVISGLQTFYLEREAISEVEWTPSIVLFTAMYSLSLTGLYSWTSFFLQGGDAAMFNLSLLTSDVYALIFAFFIEHAGPNWIYFAGFGVIFVGLVLYHSQPVPTLAESRRL 364
RE LG+ G+ G V+S +Q ER + EV W S V+ + L L G+Y TS FL DAA+FNLSLLTSD+Y++ +A+ + H P W+Y A F GL++YH+QP P LA++ R+
Sbjct: 202 REALGVLGVLGTVLSTVQALSTERLRLEEVTWNASKVVHMLGFQLCLFGMYLLTSLFLSVADAALFNLSLLTSDIYSVAWAWAVMHHRPTWLYGAAFATTVSGLIVYHTQPSPVLADNLRI 322
BLAST of mRNA_H-elongata_contig57174.13174.1 vs. uniprot
Match: A0A7R9U7Z4_9STRA (Hypothetical protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9U7Z4_9STRA) HSP 1 Score: 106 bits (264), Expect = 1.110e-23 Identity = 54/118 (45.76%), Postives = 74/118 (62.71%), Query Frame = 2
Query: 2 REFLGMAGLCGFVISGLQTFYLEREAISEVEWTPSIVLFTAMYSLSLTGLYSWTSFFLQGGDAAMFNLSLLTSDVYALIFAFFIEHAGPNWIYFAGFGVIFVGLVLYHSQPVPTLAES 355
RE LG G G ++S LQ LE S V WTP++ +F +++++ LYS SFFL D+A+FNLSLLTSD YA++F F+ H+ +YF FGV +GL +YHS+P P ES
Sbjct: 197 RELLGWLGGFGVLLSLLQAGALEGSQWSSVPWTPAVAMFFLGFAVTMFTLYSLVSFFLGMADSALFNLSLLTSDAYAVLFTLFVLHSAVTLLYFVAFGVTCIGLFIYHSEPPPAPRES 314
BLAST of mRNA_H-elongata_contig57174.13174.1 vs. uniprot
Match: A0A7S1ANB1_NOCSC (Hypothetical protein n=1 Tax=Noctiluca scintillans TaxID=2966 RepID=A0A7S1ANB1_NOCSC) HSP 1 Score: 105 bits (261), Expect = 2.280e-23 Identity = 54/118 (45.76%), Postives = 76/118 (64.41%), Query Frame = 2
Query: 2 REFLGMAGLCGFVISGLQTFYLEREAISEVEWTPSIVLFTAMYSLSLTGLYSWTSFFLQGGDAAMFNLSLLTSDVYALIFAFFIEHAGPNWIYFAGFGVIFVGLVLYHSQPVPTLAES 355
RE LG+ G+ G ++S LQ LE + +V WT +VL + + L G+Y TS FL DAA+FNLSLLTSD+Y++ +A+ ++H P+W+Y A F GL +YH+QP P LAES
Sbjct: 203 REALGVLGVFGTLLSVLQACSLEWTFLVDVTWTSPMVLHMFGFQMCLFGMYVLTSLFLSVADAALFNLSLLTSDIYSVAWAWAVQHEQPHWLYGAAFVTTMSGLAVYHTQPPPFLAES 320
BLAST of mRNA_H-elongata_contig57174.13174.1 vs. uniprot
Match: A0A7S1RHJ1_ALECA (Hypothetical protein n=1 Tax=Alexandrium catenella TaxID=2925 RepID=A0A7S1RHJ1_ALECA) HSP 1 Score: 102 bits (254), Expect = 2.110e-22 Identity = 53/110 (48.18%), Postives = 71/110 (64.55%), Query Frame = 2
Query: 5 EFLGMAGLCGFVISGLQTFYLEREAISEVEWTPSIVLFTAMYSLSLTGLYSWTSFFLQGGDAAMFNLSLLTSDVYALIFAFFIEHAGPNWIYFAGFGVIFVGLVLYHSQP 334
E LGM GL G + S LQ LER A+ E W+ +L+ + L L G+Y +TS FL DAA+FNLSLLTSD+Y++IF++ ++H W+Y A F GLVLYH+QP
Sbjct: 213 EALGMLGLWGTLFSCLQAVVLERSALMECNWSTENMLWLLGFQLCLFGMYVFTSNFLMRADAALFNLSLLTSDLYSVIFSWRVQHGTVTWMYSAAFITTLSGLVLYHTQP 322
BLAST of mRNA_H-elongata_contig57174.13174.1 vs. uniprot
Match: A0A5D6XWS6_9STRA (Homeobox domain-containing protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6XWS6_9STRA) HSP 1 Score: 103 bits (256), Expect = 6.010e-22 Identity = 52/112 (46.43%), Postives = 72/112 (64.29%), Query Frame = 2
Query: 5 EFLGMAGLCGFVISGLQTFYLEREAISEVEWTPSIVLFTAMYSLSLTGLYSWTSFFLQGGDAAMFNLSLLTSDVYALIFAFFIEHAGPNWIYFAGFGVIFVGLVLYHSQPVP 340
EFLGM GLCGF IS +Q LE A+ +EWT S L Y +L +Y+ TS FLQ DAA+FNLSLLTSD +A++ A ++ +W+YF GF +I G+++Y++ P
Sbjct: 488 EFLGMLGLCGFAISAVQGAVLEGRALQAIEWTVSSALCLVGYVCTLFLMYTCTSIFLQDADAAVFNLSLLTSDFFAVVAATYLFAEELSWVYFVGFALIIAGVLVYNNALAP 599
BLAST of mRNA_H-elongata_contig57174.13174.1 vs. uniprot
Match: A0A7S0FB94_9DINO (Hypothetical protein n=1 Tax=Pyrodinium bahamense TaxID=73915 RepID=A0A7S0FB94_9DINO) HSP 1 Score: 98.6 bits (244), Expect = 1.200e-21 Identity = 58/137 (42.34%), Postives = 77/137 (56.20%), Query Frame = 2
Query: 5 EFLGMAGLCGFVISGLQTFYLEREAISEVEWTPSIVLFTAMYSLSLTGLYSWTSFFLQGGDAAMFNLSLLTSDVYALIFAFFIEHAGPNWIYFAGFGVIFVGLVLYHSQPV---PTLAESRRLQLSNDGLRHWRVED 406
E LGM G G ++S +Q LEREA++ WT +L + L L G+Y TS FL DAA+FNLSLLTSD+Y+ +F++ ++H W+Y A F GLVLYH+QP P R Q GL R+ D
Sbjct: 96 EALGMLGFWGTLLSCVQAALLEREALARSAWTSRSLLCLLGFQLCLFGVYVLTSVFLLHADAALFNLSLLTSDLYSALFSWRVQHGTVTWMYCAAFITTLSGLVLYHTQPAVAGPQPPTDRARQGREPGLLAARLVD 232
BLAST of mRNA_H-elongata_contig57174.13174.1 vs. uniprot
Match: A0A067CAG2_SAPPC (Uncharacterized protein n=2 Tax=Saprolegnia TaxID=4769 RepID=A0A067CAG2_SAPPC) HSP 1 Score: 99.8 bits (247), Expect = 1.650e-21 Identity = 50/114 (43.86%), Postives = 69/114 (60.53%), Query Frame = 2
Query: 2 REFLGMAGLCGFVISGLQTFYLEREAISEVEWTPSIVLFTAMYSLSLTGLYSWTSFFLQGGDAAMFNLSLLTSDVYALIFAFFIEHAGPNWIYFAGFGVIFVGLVLYHSQPVPT 343
REFLGM GL GF +S +Q + ER +EW+ V+F + Y L L +YS TS L+ GDAA+FN+SLLTSD + ++ ++ +W+Y GF I GLV+Y P PT
Sbjct: 194 REFLGMLGLFGFALSAVQAYAYERHTFEAIEWSAGSVVFFSGYVLGLFLMYSVTSVMLREGDAAIFNMSLLTSDFFGVVAGVYLFQQSLSWLYCVGFVFIISGLVVYSRAPPPT 307 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig57174.13174.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig57174.13174.1 >prot_H-elongata_contig57174.13174.1 ID=prot_H-elongata_contig57174.13174.1|Name=mRNA_H-elongata_contig57174.13174.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=202bp MAGLCGFVISGLQTFYLEREAISEVEWTPSIVLFTAMYSLSLTGLYSWTSback to top mRNA from alignment at H-elongata_contig57174:1333..2510- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig57174.13174.1 ID=mRNA_H-elongata_contig57174.13174.1|Name=mRNA_H-elongata_contig57174.13174.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1178bp|location=Sequence derived from alignment at H-elongata_contig57174:1333..2510- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig57174:1333..2510- >mRNA_H-elongata_contig57174.13174.1 ID=mRNA_H-elongata_contig57174.13174.1|Name=mRNA_H-elongata_contig57174.13174.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1212bp|location=Sequence derived from alignment at H-elongata_contig57174:1333..2510- (Himanthalia elongata Himel1 dioecious)back to top |