mRNA_H-elongata_contig57154.13169.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig57154.13169.1
Unique NamemRNA_H-elongata_contig57154.13169.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig57154.13169.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig57154contigH-elongata_contig57154:2029..3604 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size1557
Cds size1164
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig57154.13169.1prot_H-elongata_contig57154.13169.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig57154 2235..3417 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930927.917914-UTR-H-elongata_contig57154:2028..22341622930927.917914-UTR-H-elongata_contig57154:2028..2234Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig57154 2029..2234 +
1691679628.425484-UTR-H-elongata_contig57154:2028..22341691679628.425484-UTR-H-elongata_contig57154:2028..2234Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig57154 2029..2234 +
1622930927.990325-UTR-H-elongata_contig57154:3417..36041622930927.990325-UTR-H-elongata_contig57154:3417..3604Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig57154 3418..3604 +
1691679628.4511006-UTR-H-elongata_contig57154:3417..36041691679628.4511006-UTR-H-elongata_contig57154:3417..3604Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig57154 3418..3604 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930927.945506-CDS-H-elongata_contig57154:2234..22511622930927.945506-CDS-H-elongata_contig57154:2234..2251Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig57154 2235..2251 +
1691679628.434-CDS-H-elongata_contig57154:2234..22511691679628.434-CDS-H-elongata_contig57154:2234..2251Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig57154 2235..2251 +
1622930927.9702096-CDS-H-elongata_contig57154:2270..34171622930927.9702096-CDS-H-elongata_contig57154:2270..3417Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig57154 2271..3417 +
1691679628.4423406-CDS-H-elongata_contig57154:2270..34171691679628.4423406-CDS-H-elongata_contig57154:2270..3417Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig57154 2271..3417 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig57154.13169.1

>prot_H-elongata_contig57154.13169.1 ID=prot_H-elongata_contig57154.13169.1|Name=mRNA_H-elongata_contig57154.13169.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=388bp
MLEASDRKAEYCAVHASEGMVKGQNGGFSSDGSVKHPRYGKAGSNEPEYC
ALHALEGMINVQSKMCVSDGCFKKPRYGLAGSKKVEYCAVHALEGMIDVA
SRICAKEECVKHQGYGVASSRKAEYCAGCALKGNIKCESKNCAKDGCLKH
PSYGVGGRRKAEYCAIHDLEGMIDVTIKMCDGDRCVKHPNDNEADSSKAE
YCELHAWEGRIGIASKTCASDGCCMRLDYSVAGSKKPVSCVAHDLERMAD
VAYTRCASDGCCKRPSCGAVGSMKPEYCIEHTLNGVITFGKLDAGDGCHR
EKRNLFDDHDLIDSKTFSFSKGMRASDDVAGSAMQEYCAENASEGMDFSA
AQNQARASKRMPESSAPGVSVLPRERSTKFKRPCYNV*
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mRNA from alignment at H-elongata_contig57154:2029..3604+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig57154.13169.1 ID=mRNA_H-elongata_contig57154.13169.1|Name=mRNA_H-elongata_contig57154.13169.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1576bp|location=Sequence derived from alignment at H-elongata_contig57154:2029..3604+ (Himanthalia elongata Himel1 dioecious)
GGTGTGGCCGGCACCAAGAAAGCGAAATACTGCGCGGTGCATTCTTTAGA
TGGGATGATCGACGTTGCGAGCAGGAGATGTGCTAAGGATAAGTGCGTTA
AGCATCCGAGCTTTGGCGTGGCCGGCAGCAGGAAAGCGGAATACTGCGCG
GTACACGCTTCAGAAGGGATGATAAATGTTAAAAGCAAGATGTGTGCTAA
GGATGGATGCTTGAAGCATCTGAGTTATGGCGTGGCCGGCAGCAGGAAAG
CGGAATACTGCGCAGTACATGCTTCGGAAGGGATGGTCAAAGGTCAGAAC
GGAGGGTTTTCTAGCGATGGAAGCGTGAAGCATCCACGTTATGGCAAAGC
CGGCAGCAATGAACCGGAATACTGCGCATTGCATGCTTTAGAAGGGATGA
TCAACGTTCAAAGCAAGATGTGTGTGAGCGATGGATGTTTTAAGAAACCG
AGATATGGCTTGGCCGGCAGCAAGAAAGTGGAATACTGCGCTGTGCATGC
TTTAGAGGGGATGATCGACGTTGCGAGCAGGATATGTGCTAAGGAGGAGT
GCGTTAAGCATCAGGGCTATGGCGTGGCTAGCAGCAGGAAAGCGGAATAC
TGCGCAGGGTGTGCTTTAAAAGGGAATATCAAATGTGAAAGCAAGAATTG
TGCTAAGGATGGATGCTTGAAGCATCCGAGTTATGGCGTGGGCGGCAGGA
GGAAAGCAGAATACTGTGCAATTCATGATTTGGAAGGGATGATTGATGTT
ACGATAAAGATGTGTGATGGGGATAGATGTGTTAAGCATCCGAATGATAA
CGAGGCAGACAGCAGTAAAGCGGAATACTGCGAACTGCATGCTTGGGAAG
GGAGGATTGGCATTGCGAGCAAGACTTGTGCTAGCGATGGATGCTGTATG
CGACTCGACTATAGCGTGGCCGGAAGCAAAAAGCCAGTGTCCTGCGTGGC
GCATGATTTGGAAAGGATGGCCGACGTTGCTTACACGAGATGCGCAAGCG
ATGGGTGCTGTAAGCGACCGAGCTGTGGCGCTGTCGGTAGCATGAAGCCG
GAATACTGTATCGAGCATACTTTAAATGGAGTGATCACCTTTGGGAAATT
GGATGCTGGCGATGGATGTCATAGGGAGAAACGAAATTTATTTGACGATC
ATGATTTAATCGATTCCAAGACGTTTTCCTTCAGCAAAGGGATGCGCGCA
AGCGACGATGTTGCAGGCAGCGCGATGCAGGAGTATTGCGCTGAAAATGC
TTCGGAGGGCATGGATTTTTCGGCTGCACAAAATCAGGCTAGGGCCAGTA
AGCGAATGCCTGAGAGTTCTGCACCAGGAGTATCTGTTTTGCCGAGAGAA
AGATCGACTAAGTTTAAGCGCCCCTGTTATAATGTATAAGATGCAGGAAG
AGTGAAAATTTAGGTTTTCCTATCGCTAAGAAACTTCTTCGAAGTAAACA
TGTACAAAGAATATACTGGAGACCATGCAGGGTGTTTGCGCTCCGAGGCT
ACCATGCCTCCAAAACGGCCGTACATAGCATATTTCAAACAAACAGTGGA
CACGGAGGTTTGTTTGTTTGATCTGG
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Coding sequence (CDS) from alignment at H-elongata_contig57154:2029..3604+

>mRNA_H-elongata_contig57154.13169.1 ID=mRNA_H-elongata_contig57154.13169.1|Name=mRNA_H-elongata_contig57154.13169.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=2328bp|location=Sequence derived from alignment at H-elongata_contig57154:2029..3604+ (Himanthalia elongata Himel1 dioecious)
ATGCTTGAAGCATCTGAATGCTTGAAGCATCTGACAGGAAAGCGGAATAC
TGCGCAGTACATGCTTCGGAAGGGATGGTCAAAGGTCAGAACGGAGGGTT
TTCTAGCGATGGAAGCGTGAAGCATCCACGTTATGGCAAAGCCGGCAGCA
ATGAACCGGAATACTGCGCATTGCATGCTTTAGAAGGGATGATCAACGTT
CAAAGCAAGATGTGTGTGAGCGATGGATGTTTTAAGAAACCGAGATATGG
CTTGGCCGGCAGCAAGAAAGTGGAATACTGCGCTGTGCATGCTTTAGAGG
GGATGATCGACGTTGCGAGCAGGATATGTGCTAAGGAGGAGTGCGTTAAG
CATCAGGGCTATGGCGTGGCTAGCAGCAGGAAAGCGGAATACTGCGCAGG
GTGTGCTTTAAAAGGGAATATCAAATGTGAAAGCAAGAATTGTGCTAAGG
ATGGATGCTTGAAGCATCCGAGTTATGGCGTGGGCGGCAGGAGGAAAGCA
GAATACTGTGCAATTCATGATTTGGAAGGGATGATTGATGTTACGATAAA
GATGTGTGATGGGGATAGATGTGTTAAGCATCCGAATGATAACGAGGCAG
ACAGCAGTAAAGCGGAATACTGCGAACTGCATGCTTGGGAAGGGAGGATT
GGCATTGCGAGCAAGACTTGTGCTAGCGATGGATGCTGTATGCGACTCGA
CTATAGCGTGGCCGGAAGCAAAAAGCCAGTGTCCTGCGTGGCGCATGATT
TGGAAAGGATGGCCGACGTTGCTTACACGAGATGCGCAAGCGATGGGTGC
TGTAAGCGACCGAGCTGTGGCGCTGTCGGTAGCATGAAGCCGGAATACTG
TATCGAGCATACTTTAAATGGAGTGATCACCTTTGGGAAATTGGATGCTG
GCGATGGATGTCATAGGGAGAAACGAAATTTATTTGACGATCATGATTTA
ATCGATTCCAAGACGTTTTCCTTCAGCAAAGGGATGCGCGCAAGCGACGA
TGTTGCAGGCAGCGCGATGCAGGAGTATTGCGCTGAAAATGCTTCGGAGG
GCATGGATTTTTCGGCTGCACAAAATCAGGCTAGGGCCAGTAAGCGAATG
CCTGAGAGTTCTGCACCAGGAGTATCTGTTTTGCCGAGAGAAAGATCGAC
TAAGTTTAAGCGCCCCTGTTATAATGTATAACAGGAAAGCGGAATACTGC
GCAGTACATGCTTCGGAAGGGATGGTCAAAGGTCAGAACGGAGGGTTTTC
TAGCGATGGAAGCGTGAAGCATCCACGTTATGGCAAAGCCGGCAGCAATG
AACCGGAATACTGCGCATTGCATGCTTTAGAAGGGATGATCAACGTTCAA
AGCAAGATGTGTGTGAGCGATGGATGTTTTAAGAAACCGAGATATGGCTT
GGCCGGCAGCAAGAAAGTGGAATACTGCGCTGTGCATGCTTTAGAGGGGA
TGATCGACGTTGCGAGCAGGATATGTGCTAAGGAGGAGTGCGTTAAGCAT
CAGGGCTATGGCGTGGCTAGCAGCAGGAAAGCGGAATACTGCGCAGGGTG
TGCTTTAAAAGGGAATATCAAATGTGAAAGCAAGAATTGTGCTAAGGATG
GATGCTTGAAGCATCCGAGTTATGGCGTGGGCGGCAGGAGGAAAGCAGAA
TACTGTGCAATTCATGATTTGGAAGGGATGATTGATGTTACGATAAAGAT
GTGTGATGGGGATAGATGTGTTAAGCATCCGAATGATAACGAGGCAGACA
GCAGTAAAGCGGAATACTGCGAACTGCATGCTTGGGAAGGGAGGATTGGC
ATTGCGAGCAAGACTTGTGCTAGCGATGGATGCTGTATGCGACTCGACTA
TAGCGTGGCCGGAAGCAAAAAGCCAGTGTCCTGCGTGGCGCATGATTTGG
AAAGGATGGCCGACGTTGCTTACACGAGATGCGCAAGCGATGGGTGCTGT
AAGCGACCGAGCTGTGGCGCTGTCGGTAGCATGAAGCCGGAATACTGTAT
CGAGCATACTTTAAATGGAGTGATCACCTTTGGGAAATTGGATGCTGGCG
ATGGATGTCATAGGGAGAAACGAAATTTATTTGACGATCATGATTTAATC
GATTCCAAGACGTTTTCCTTCAGCAAAGGGATGCGCGCAAGCGACGATGT
TGCAGGCAGCGCGATGCAGGAGTATTGCGCTGAAAATGCTTCGGAGGGCA
TGGATTTTTCGGCTGCACAAAATCAGGCTAGGGCCAGTAAGCGAATGCCT
GAGAGTTCTGCACCAGGAGTATCTGTTTTGCCGAGAGAAAGATCGACTAA
GTTTAAGCGCCCCTGTTATAATGTATAA
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