mRNA_H-elongata_contig57076.13162.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig57076.13162.1
Unique NamemRNA_H-elongata_contig57076.13162.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig57076.13162.1 vs. uniprot
Match: A0A836CLH3_9STRA (Kinase-like domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CLH3_9STRA)

HSP 1 Score: 103 bits (256), Expect = 1.610e-23
Identity = 50/66 (75.76%), Postives = 58/66 (87.88%), Query Frame = 1
Query:    1 QAIWILSELCSRGSLRQVLNENTP-LPSKMRLRLGVDVAEGMLYLQSREEPIIHRDLKSHNVFLHE 195
            QAIWI+SELCSRGSLRQVL++ +  LP  MRLR+ VD+AEGMLYL SRE+PIIHRDLKSHNVF+ E
Sbjct:   96 QAIWIVSELCSRGSLRQVLDDRSQHLPLVMRLRIAVDIAEGMLYLHSREQPIIHRDLKSHNVFIQE 161          
BLAST of mRNA_H-elongata_contig57076.13162.1 vs. uniprot
Match: A0A6H5J8D6_9PHAE (Protein kinase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J8D6_9PHAE)

HSP 1 Score: 101 bits (251), Expect = 2.340e-22
Identity = 49/67 (73.13%), Postives = 57/67 (85.07%), Query Frame = 1
Query:    1 QAIWILSELCSRGSLRQVLNEN-TPLPSKMRLRLGVDVAEGMLYLQSREEPIIHRDLKSHNVFLHED 198
            QAIWI+SELC RGSLRQVL++  T L  + RLR+ VDVAEGMLYL SREEP+IHRDLKSHN+F+ ED
Sbjct: 1146 QAIWIVSELCPRGSLRQVLDDRGTSLTPRARLRVAVDVAEGMLYLHSREEPVIHRDLKSHNIFMMED 1212          
BLAST of mRNA_H-elongata_contig57076.13162.1 vs. uniprot
Match: D7FTR3_ECTSI (Similar to Serine/threonine-protein kinase CTR1 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FTR3_ECTSI)

HSP 1 Score: 100 bits (249), Expect = 4.210e-22
Identity = 49/66 (74.24%), Postives = 56/66 (84.85%), Query Frame = 1
Query:    4 AIWILSELCSRGSLRQVLNEN-TPLPSKMRLRLGVDVAEGMLYLQSREEPIIHRDLKSHNVFLHED 198
            AIWI+SELC RGSLRQVL++  TPL    RLR+ VDVAEGMLYL SREEP+IHRDLKSHN+F+ ED
Sbjct:  521 AIWIVSELCPRGSLRQVLDDRGTPLTPWARLRVAVDVAEGMLYLHSREEPVIHRDLKSHNIFMMED 586          
BLAST of mRNA_H-elongata_contig57076.13162.1 vs. uniprot
Match: A0A7S3XPL6_HETAK (Hypothetical protein n=2 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XPL6_HETAK)

HSP 1 Score: 99.0 bits (245), Expect = 5.420e-22
Identity = 45/66 (68.18%), Postives = 57/66 (86.36%), Query Frame = 1
Query:    1 QAIWILSELCSRGSLRQVLNEN-TPLPSKMRLRLGVDVAEGMLYLQSREEPIIHRDLKSHNVFLHE 195
            Q++WI+SELCSRGSLRQVLN+  T L ++ RL+L +DVAEGMLYL + E PI+HRDLKSHN+F+HE
Sbjct:  195 QSLWIVSELCSRGSLRQVLNDRRTRLSTRRRLQLAIDVAEGMLYLHNHEAPIVHRDLKSHNIFIHE 260          
BLAST of mRNA_H-elongata_contig57076.13162.1 vs. uniprot
Match: A0A835Z8B5_9STRA (Kinase-like domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z8B5_9STRA)

HSP 1 Score: 94.7 bits (234), Expect = 5.600e-21
Identity = 46/65 (70.77%), Postives = 55/65 (84.62%), Query Frame = 1
Query:    4 AIWILSELCSRGSLRQVLNENTP-LPSKMRLRLGVDVAEGMLYLQSREEPIIHRDLKSHNVFLHE 195
            AIWI+SELCSRGSLRQVL++ +  L    RLR+ VDVAEGMLYL +R++PIIHRDLKSHNVF+ E
Sbjct:   97 AIWIVSELCSRGSLRQVLDDRSQQLTPVQRLRIAVDVAEGMLYLHTRDQPIIHRDLKSHNVFIQE 161          
BLAST of mRNA_H-elongata_contig57076.13162.1 vs. uniprot
Match: A0A6U2RLA0_9STRA (Hypothetical protein n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A6U2RLA0_9STRA)

HSP 1 Score: 95.1 bits (235), Expect = 3.250e-20
Identity = 46/66 (69.70%), Postives = 55/66 (83.33%), Query Frame = 1
Query:    1 QAIWILSELCSRGSLRQVL-NENTPLPSKMRLRLGVDVAEGMLYLQSREEPIIHRDLKSHNVFLHE 195
            QAIWI+SELCS GSLRQVL +EN  LP  +RL+L + VAEGM YL ++E PIIHRDLKSHN+F+HE
Sbjct:  671 QAIWIVSELCSLGSLRQVLMDENRDLPIALRLQLALHVAEGMAYLHTQEPPIIHRDLKSHNIFIHE 736          
BLAST of mRNA_H-elongata_contig57076.13162.1 vs. uniprot
Match: A0A1Z5JH37_FISSO (Protein kinase domain-containing protein n=1 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5JH37_FISSO)

HSP 1 Score: 95.1 bits (235), Expect = 3.390e-20
Identity = 49/80 (61.25%), Postives = 64/80 (80.00%), Query Frame = 1
Query:    1 QAIWILSELCSRGSLRQVLNENTPLPS-KMRLRLGVDVAEGMLYLQSREEPIIHRDLKSHNVFLHE---DVE*GTHTHSR 228
            QAIWI+SELCS+GSLRQ+L++N  + S  +RL+L + VAEGM YL ++E PIIHRDLKSHN+F+HE   DVE G+ T S+
Sbjct:  627 QAIWIVSELCSQGSLRQLLDDNERVLSVDLRLQLALQVAEGMTYLHNQEPPIIHRDLKSHNIFVHETFTDVEDGSTTSSK 706          
BLAST of mRNA_H-elongata_contig57076.13162.1 vs. uniprot
Match: A0A7S1D2K4_CYCTE (Hypothetical protein n=1 Tax=Cyclophora tenuis TaxID=216820 RepID=A0A7S1D2K4_CYCTE)

HSP 1 Score: 93.2 bits (230), Expect = 4.330e-20
Identity = 40/65 (61.54%), Postives = 55/65 (84.62%), Query Frame = 1
Query:    1 QAIWILSELCSRGSLRQVLNENTPLPSKMRLRLGVDVAEGMLYLQSREEPIIHRDLKSHNVFLHE 195
            QAIWI+SELCS GSLRQ+L+ +  +P  +R+R+ + VAEGM+YL +++ PIIHRDLKSHN+F+HE
Sbjct:   99 QAIWIVSELCSLGSLRQLLDGDRGMPQGLRIRMALQVAEGMMYLHNQDTPIIHRDLKSHNIFVHE 163          
BLAST of mRNA_H-elongata_contig57076.13162.1 vs. uniprot
Match: A0A1Z5K8N3_FISSO (Protein kinase domain-containing protein n=1 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5K8N3_FISSO)

HSP 1 Score: 93.6 bits (231), Expect = 1.130e-19
Identity = 48/80 (60.00%), Postives = 63/80 (78.75%), Query Frame = 1
Query:    1 QAIWILSELCSRGSLRQVLNENTPLPS-KMRLRLGVDVAEGMLYLQSREEPIIHRDLKSHNVFLHE---DVE*GTHTHSR 228
            QAIWI+SELCS+GSLRQ+L++N  + S  +RL+L + VAEGM YL ++E PIIHRDLKSHN+F+HE   D E G+ T S+
Sbjct:  846 QAIWIVSELCSQGSLRQLLDDNERVLSVDLRLQLALQVAEGMTYLHNQEPPIIHRDLKSHNIFVHETFTDAEDGSTTSSK 925          
BLAST of mRNA_H-elongata_contig57076.13162.1 vs. uniprot
Match: A0A7S2RJM8_9STRA (Hypothetical protein (Fragment) n=1 Tax=Eucampia antarctica TaxID=49252 RepID=A0A7S2RJM8_9STRA)

HSP 1 Score: 87.4 bits (215), Expect = 1.170e-19
Identity = 41/66 (62.12%), Postives = 54/66 (81.82%), Query Frame = 1
Query:    1 QAIWILSELCSRGSLRQVLNE-NTPLPSKMRLRLGVDVAEGMLYLQSREEPIIHRDLKSHNVFLHE 195
            QAIWI+SEL S GSLRQVL+E +T L  ++++ + + VAEGM+YL  +E PIIHRDLKSHN+F+HE
Sbjct:   32 QAIWIISELMSLGSLRQVLDETDTELSIELKVNIALQVAEGMMYLHGQEPPIIHRDLKSHNIFIHE 97          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig57076.13162.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A836CLH3_9STRA1.610e-2375.76Kinase-like domain-containing protein n=1 Tax=Trib... [more]
A0A6H5J8D6_9PHAE2.340e-2273.13Protein kinase domain-containing protein n=1 Tax=E... [more]
D7FTR3_ECTSI4.210e-2274.24Similar to Serine/threonine-protein kinase CTR1 n=... [more]
A0A7S3XPL6_HETAK5.420e-2268.18Hypothetical protein n=2 Tax=Heterosigma akashiwo ... [more]
A0A835Z8B5_9STRA5.600e-2170.77Kinase-like domain-containing protein n=1 Tax=Trib... [more]
A0A6U2RLA0_9STRA3.250e-2069.70Hypothetical protein n=1 Tax=Leptocylindrus danicu... [more]
A0A1Z5JH37_FISSO3.390e-2061.25Protein kinase domain-containing protein n=1 Tax=F... [more]
A0A7S1D2K4_CYCTE4.330e-2061.54Hypothetical protein n=1 Tax=Cyclophora tenuis Tax... [more]
A0A1Z5K8N3_FISSO1.130e-1960.00Protein kinase domain-containing protein n=1 Tax=F... [more]
A0A7S2RJM8_9STRA1.170e-1962.12Hypothetical protein (Fragment) n=1 Tax=Eucampia a... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig57076contigH-elongata_contig57076:710..1430 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score68.2
Seed ortholog evalue1e-09
Seed eggNOG ortholog2880.D7FTR3
EggNOG free text desc.protein kinase activity
EggNOG OGsCOG0515@1,KOG0192@2759
COG Functional cat.KLT
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Model size386
Cds size123
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig57076.13162.1prot_H-elongata_contig57076.13162.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig57076 1224..1346 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930927.133243-UTR-H-elongata_contig57076:709..8201622930927.133243-UTR-H-elongata_contig57076:709..820Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig57076 710..820 -
1691679628.1340423-UTR-H-elongata_contig57076:709..8201691679628.1340423-UTR-H-elongata_contig57076:709..820Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig57076 710..820 -
1622930927.1803966-UTR-H-elongata_contig57076:1155..12231622930927.1803966-UTR-H-elongata_contig57076:1155..1223Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig57076 1156..1223 -
1691679628.1506548-UTR-H-elongata_contig57076:1155..12231691679628.1506548-UTR-H-elongata_contig57076:1155..1223Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig57076 1156..1223 -
1622930927.2191737-UTR-H-elongata_contig57076:1346..14301622930927.2191737-UTR-H-elongata_contig57076:1346..1430Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig57076 1347..1430 -
1691679628.181798-UTR-H-elongata_contig57076:1346..14301691679628.181798-UTR-H-elongata_contig57076:1346..1430Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig57076 1347..1430 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930927.1950603-CDS-H-elongata_contig57076:1223..13461622930927.1950603-CDS-H-elongata_contig57076:1223..1346Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig57076 1224..1346 -
1691679628.1720068-CDS-H-elongata_contig57076:1223..13461691679628.1720068-CDS-H-elongata_contig57076:1223..1346Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig57076 1224..1346 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig57076.13162.1

>prot_H-elongata_contig57076.13162.1 ID=prot_H-elongata_contig57076.13162.1|Name=mRNA_H-elongata_contig57076.13162.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=41bp
MRLRLGVDVAEGMLYLQSREEPIIHRDLKSHNVFLHEDVE*
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mRNA from alignment at H-elongata_contig57076:710..1430-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig57076.13162.1 ID=mRNA_H-elongata_contig57076.13162.1|Name=mRNA_H-elongata_contig57076.13162.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=721bp|location=Sequence derived from alignment at H-elongata_contig57076:710..1430- (Himanthalia elongata Himel1 dioecious)
CAGGCAATATGGATCCTGAGCGAGCTCTGCTCCCGTGGGAGCCTCCGACA GGTGTTGAATGAGAACACACCCCTGCCGTCCAAGATGCGGCTACGCCTGG GGGTGGACGTGGCCGAGGGCATGTTGTACCTTCAAAGCCGGGAGGAGCCC ATCATACACAGAGACCTCAAGAGCCACAACGTGTTCCTGCACGAGGACGT GGAGTGAGGCACACACACGCACTCGCGCTCTTGAAACGATCCGAAGCCGA CGAGAAAAAAAATACGAGAGCGTTTGTGCTAATGCTGAAGCATGTTGAAG TGTCGTTTTACGGAGAGAGGGAGGCGCGGGGACAGCGTTTTGGGGATATT GTCACTATGCTTTTGTCATAACTGTATTGAATGATTTGTAAGGAGCACGT TTGCTTTTCCTAGGTTCCTAGGTATGGAAGAGGGTCAAGCTCGCTTTATT CATCACATCACATCATCCACTGCAGTCGCCACAACAGTTGGATTGGTAAC GCCCTGTCCTCCCGCCTTTTGACCTTCCTCCTTAACCCCATCCCCTTACT TCCTTCCTTTATGTTTCTCATTTACGACGTTTGACTATTGTAACATGCCG CAGCGGGCAGCTTCAGCCCAGGATTGGCGATTGGGGTTCCGCGCGAGCAG TGGCCCTCTACTCTGGAATGCGAAGCATGACGCACGGAGTGGGGACTACG TGCTGGCTGGCCCCCGAGGTA
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Coding sequence (CDS) from alignment at H-elongata_contig57076:710..1430-

>mRNA_H-elongata_contig57076.13162.1 ID=mRNA_H-elongata_contig57076.13162.1|Name=mRNA_H-elongata_contig57076.13162.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=246bp|location=Sequence derived from alignment at H-elongata_contig57076:710..1430- (Himanthalia elongata Himel1 dioecious)
ATGCGGCTACGCCTGGGGGTGGACGTGGCCGAGGGCATGTTGTACCTTCA
AAGCCGGGAGGAGCCCATCATACACAGAGACCTCAAGAGCCACAACGTGT
TCCTGCACGAGGACGTGGAGTGAATGCGGCTACGCCTGGGGGTGGACGTG
GCCGAGGGCATGTTGTACCTTCAAAGCCGGGAGGAGCCCATCATACACAG
AGACCTCAAGAGCCACAACGTGTTCCTGCACGAGGACGTGGAGTGA
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