mRNA_H-elongata_contig57074.13161.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig57074.13161.1
Unique NamemRNA_H-elongata_contig57074.13161.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig57074.13161.1 vs. uniprot
Match: A0A6H5KDA0_9PHAE (MULE domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KDA0_9PHAE)

HSP 1 Score: 170 bits (431), Expect = 3.100e-48
Identity = 79/140 (56.43%), Postives = 104/140 (74.29%), Query Frame = 1
Query:    4 CPRLSFRNTNFVFKVYNEMQKINDELNAKYEDATNLLVSLKSESGMYCEHTLDAHGRLVDIFWSTVEQQEQITRFGGCVQLDTTVFTNRYRCPLLFVVGVDGENRSFILGQGLLRSECTETLEWILDKYEAAAGGRKPKV 423
            C    FR  +   KVYN + KI +EL +  ED+ N L  L++E GM+ + T D+ GR+VD+FW+TV+QQ+++  FGGC+Q+DTTVFTNRY CPLLF+VGVD ENR  +L QG+LRSE T+T +W LD YE AAGGR+PKV
Sbjct:  297 CMSDRFRTFSEPSKVYNAINKILNELYSTPEDSANFLTKLEAEPGMFVKRTFDSLGRIVDVFWATVDQQDKMATFGGCIQMDTTVFTNRYGCPLLFIVGVDDENRMCVLRQGVLRSESTKTFKWFLDSYEEAAGGRRPKV 436          
BLAST of mRNA_H-elongata_contig57074.13161.1 vs. uniprot
Match: A0A6H5JGK0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JGK0_9PHAE)

HSP 1 Score: 170 bits (430), Expect = 2.870e-46
Identity = 80/128 (62.50%), Postives = 98/128 (76.56%), Query Frame = 1
Query:   43 KVYNEMQKINDELNAKYEDATNLLVSLKSESGMYCEHTLDAHGRLVDIFWSTVEQQEQITRFGGCVQLDTTVFTNRYRCPLLFVVGVDGENRSFILGQGLLRSECTETLEWILDKYEAAAGG--RKPK 420
            KV+N M K+ +EL    EDA N L +L+S+ GMY  +T D  GRLV++FW+T +QQE+  RFGGC+Q+DTTVF NRYRCP+L  VGVD ENRS ILGQGLLRSEC ET EW L +YE+AAGG  R+PK
Sbjct:  943 KVWNFMAKVQEELYCSPEDAANFLATLRSDPGMYVANTFDDPGRLVNVFWATADQQERAARFGGCIQMDTTVFANRYRCPVLLFVGVDDENRSCILGQGLLRSECAETFEWFLTQYESAAGGWERRPK 1070          
BLAST of mRNA_H-elongata_contig57074.13161.1 vs. uniprot
Match: A0A6H5KG54_9PHAE (SWIM-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KG54_9PHAE)

HSP 1 Score: 169 bits (427), Expect = 6.580e-46
Identity = 80/129 (62.02%), Postives = 98/129 (75.97%), Query Frame = 1
Query:   43 KVYNEMQKINDELNAKYEDATNLLVSLKSESGMYCEHTLDAHGRLVDIFWSTVEQQEQITRFGGCVQLDTTVFTNRYRCPLLFVVGVDGENRSFILGQGLLRSECTETLEWILDKYEAAAGG--RKPKV 423
            KV+N M K+ +EL    EDA N L +L+S+ GMY  +T D  GRLV++FW+T +QQE+  RFGGC+Q+DTTVF NRY CP+L  VGVD ENRS ILGQGLLRSEC ET EW L +YE+AAGG  R+PKV
Sbjct:  245 KVWNFMAKVQEELYCSPEDAANFLATLRSDPGMYVANTFDDPGRLVNVFWATADQQERAARFGGCIQMDTTVFANRYGCPVLLFVGVDDENRSCILGQGLLRSECAETFEWFLTQYESAAGGWERRPKV 373          
BLAST of mRNA_H-elongata_contig57074.13161.1 vs. uniprot
Match: A0A6H5KAB1_9PHAE (SWIM-type domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KAB1_9PHAE)

HSP 1 Score: 162 bits (409), Expect = 6.040e-44
Identity = 76/124 (61.29%), Postives = 93/124 (75.00%), Query Frame = 1
Query:   58 MQKINDELNAKYEDATNLLVSLKSESGMYCEHTLDAHGRLVDIFWSTVEQQEQITRFGGCVQLDTTVFTNRYRCPLLFVVGVDGENRSFILGQGLLRSECTETLEWILDKYEAAAGG--RKPKV 423
            M K+ +EL    EDA N L +L+S+ GMY  +T D  GRLV++FW+T +QQE+  RFGGC+Q+DTTVF NRY CP+   VGVD ENRS ILGQGLLRSEC ET EW L +YE+AAGG  R+PKV
Sbjct:    1 MAKVQEELYCSPEDAANFLATLRSDPGMYVANTFDDPGRLVNVFWATADQQERAARFGGCIQMDTTVFANRYGCPVFLFVGVDDENRSCILGQGLLRSECAETFEWFLTQYESAAGGWERRPKV 124          
BLAST of mRNA_H-elongata_contig57074.13161.1 vs. uniprot
Match: A0A6H5L618_9PHAE (MULE domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L618_9PHAE)

HSP 1 Score: 163 bits (412), Expect = 6.510e-44
Identity = 76/127 (59.84%), Postives = 95/127 (74.80%), Query Frame = 1
Query:   43 KVYNEMQKINDELNAKYEDATNLLVSLKSESGMYCEHTLDAHGRLVDIFWSTVEQQEQITRFGGCVQLDTTVFTNRYRCPLLFVVGVDGENRSFILGQGLLRSECTETLEWILDKYEAAAGGRKPKV 423
            KVYN M  I D L +  EDA N L +L+SE GM+ E   D+ GRL ++FW+TV+QQ +I R+G C+Q+DTTVF NRY CPLLF+VGVD ENRS IL Q LLRSECTET +WIL  ++ A+G R+PKV
Sbjct:   15 KVYNAMAAIKDHLYSSPEDAANFLATLQSEPGMFVEREFDSIGRLENVFWATVDQQNKIARYGACIQMDTTVFMNRYGCPLLFIVGVDDENRSCILAQCLLRSECTETFKWILTSWDGASGDRRPKV 141          
BLAST of mRNA_H-elongata_contig57074.13161.1 vs. uniprot
Match: A0A6H5JZB4_9PHAE (SWIM-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZB4_9PHAE)

HSP 1 Score: 162 bits (411), Expect = 1.030e-43
Identity = 75/127 (59.06%), Postives = 100/127 (78.74%), Query Frame = 1
Query:   43 KVYNEMQKINDELNAKYEDATNLLVSLKSESGMYCEHTLDAHGRLVDIFWSTVEQQEQITRFGGCVQLDTTVFTNRYRCPLLFVVGVDGENRSFILGQGLLRSECTETLEWILDKYEAAAGGRKPKV 423
            KVYN ++KI +EL +  ED  N L  L++E GM+ + T D+ GR+VD+FW+TV+QQ+++    GC+Q+DTTVFT+RY CPLLF+VGVD ENR+ +LGQG+LRSE TET +W LD YE AAGGR+PKV
Sbjct:  342 KVYNAIKKIQNELYSTPEDGANFLAKLEAEPGMFVKRTFDSLGRIVDVFWATVDQQDKMAAT-GCMQMDTTVFTDRYGCPLLFIVGVDDENRTCVLGQGVLRSESTETFKWFLDSYEEAAGGRRPKV 467          
BLAST of mRNA_H-elongata_contig57074.13161.1 vs. uniprot
Match: A0A6H5JP13_9PHAE (SWIM-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JP13_9PHAE)

HSP 1 Score: 157 bits (396), Expect = 8.940e-42
Identity = 74/122 (60.66%), Postives = 93/122 (76.23%), Query Frame = 1
Query:   64 KINDELNAKYEDATNLLVSLKSESGMYCEHTLDAHGRLVDIFWSTVEQQEQITRFGGCVQLDTTVFTNRYRCPLLFVVGVDGENRSFILGQGLLRSECTETLEWILDKYEAAAGG--RKPKV 423
            +I++EL    EDA N L +L+S+ GMY  +  D  GRLV++FW+T +QQE+  RFGGC+Q+DTTVF NRY CP+L  VGVD ENRS ILGQGLLRSEC ET EW L +YE+AAGG  R+PK+
Sbjct:  219 RISEELPLLPEDAANFLATLRSDPGMYVANIFDDPGRLVNVFWATADQQERAARFGGCIQMDTTVFANRYGCPVLLFVGVDDENRSCILGQGLLRSECAETFEWFLTQYESAAGGWERRPKM 340          
BLAST of mRNA_H-elongata_contig57074.13161.1 vs. uniprot
Match: A0A6H5L3G4_9PHAE (MULE domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L3G4_9PHAE)

HSP 1 Score: 148 bits (373), Expect = 3.780e-39
Identity = 62/101 (61.39%), Postives = 86/101 (85.15%), Query Frame = 1
Query:  121 LKSESGMYCEHTLDAHGRLVDIFWSTVEQQEQITRFGGCVQLDTTVFTNRYRCPLLFVVGVDGENRSFILGQGLLRSECTETLEWILDKYEAAAGGRKPKV 423
            L++E GM+ + T D+ GR+VD+FW+TV+QQ+++  FGGC+Q++TTVFTNR+ CPLLF+VGVD ENR+ +LGQG+LRSE TE+ +W +D YE AAGGR+PKV
Sbjct:  352 LEAEPGMFVKRTFDSLGRIVDVFWATVDQQDKMATFGGCIQMETTVFTNRHGCPLLFIVGVDDENRTCVLGQGMLRSESTESFKWFVDSYEKAAGGRRPKV 452          
BLAST of mRNA_H-elongata_contig57074.13161.1 vs. uniprot
Match: A0A6H5KWM8_9PHAE (MULE domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KWM8_9PHAE)

HSP 1 Score: 145 bits (367), Expect = 5.760e-38
Identity = 81/135 (60.00%), Postives = 96/135 (71.11%), Query Frame = 1
Query:   22 RNTN-FVFKVYNEMQKINDELNAKYEDATNLLVSLKSESGMYCEHTLDAHGRLVDIFWSTVEQQEQITRFGGCVQLDTTVFTNRYRCPLLFVVGVDGENRSFILGQGLLRSECTETLEWILDKYEAAAGGRKPKV 423
            R+TN  +  VY E+QK++DELNAK EDAT+ L SLKSE GMYC+HTLDA GRLVD+FWST+EQQ  I RFGGC+QLDTTVFTN   C   F  G D        GQ      CT+T E +L++YE AAGGR+PKV
Sbjct:  159 RDTNPSISSVYYEIQKLSDELNAKPEDATDFLASLKSEPGMYCDHTLDAQGRLVDVFWSTIEQQAHIARFGGCIQLDTTVFTNS-ACFCAFW-GRD------CCGQ------CTQTFERMLNRYETAAGGRRPKV 279          
BLAST of mRNA_H-elongata_contig57074.13161.1 vs. uniprot
Match: A0A6H5KR58_9PHAE (MULE domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KR58_9PHAE)

HSP 1 Score: 134 bits (337), Expect = 1.720e-34
Identity = 61/105 (58.10%), Postives = 81/105 (77.14%), Query Frame = 1
Query:   52 NEMQKINDELNAKYEDATNLLVSLKSESGMYCEHTLDAHGRLVDIFWSTVEQQEQITRFGGCVQLDTTVFTNRYRCPLLFVVGVDGENRSFILGQGLLRSECTET 366
            N + KI  E  +  E   N+L  L++ESGM+ + T D+ GR+VD+FW+TV+QQ+++  FGGC+Q+DTT FTNRY CPLLF+VGVD ENRS +LGQG+LRSE TET
Sbjct:  272 NAINKIRYESYSTPEHGANVLAKLEAESGMFVKRTFDSLGRIVDVFWATVDQQDKMATFGGCIQMDTTAFTNRYGCPLLFIVGVDDENRSCVLGQGVLRSESTET 376          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig57074.13161.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KDA0_9PHAE3.100e-4856.43MULE domain-containing protein n=1 Tax=Ectocarpus ... [more]
A0A6H5JGK0_9PHAE2.870e-4662.50Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KG54_9PHAE6.580e-4662.02SWIM-type domain-containing protein n=1 Tax=Ectoca... [more]
A0A6H5KAB1_9PHAE6.040e-4461.29SWIM-type domain-containing protein (Fragment) n=1... [more]
A0A6H5L618_9PHAE6.510e-4459.84MULE domain-containing protein n=1 Tax=Ectocarpus ... [more]
A0A6H5JZB4_9PHAE1.030e-4359.06SWIM-type domain-containing protein n=1 Tax=Ectoca... [more]
A0A6H5JP13_9PHAE8.940e-4260.66SWIM-type domain-containing protein n=1 Tax=Ectoca... [more]
A0A6H5L3G4_9PHAE3.780e-3961.39MULE domain-containing protein n=1 Tax=Ectocarpus ... [more]
A0A6H5KWM8_9PHAE5.760e-3860.00MULE domain-containing protein n=1 Tax=Ectocarpus ... [more]
A0A6H5KR58_9PHAE1.720e-3458.10MULE domain-containing protein n=1 Tax=Ectocarpus ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig57074contigH-elongata_contig57074:2136..3178 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeViridiplantae
Seed ortholog score76.6
Seed ortholog evalue1e-11
Seed eggNOG ortholog38727.Pavir.Ha01487.1.p
EggNOG free text desc.FAR1 DNA-binding domain
EggNOG OGs2CMNZ@1,2QR4C@2759,37R7C@33090,3GEJS@35493,3I3BQ@38820,3M3BI@4447
COG Functional cat.S
Best tax levelPoales
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons2
Model size425
Cds size423
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930927.066263-CDS-H-elongata_contig57074:2135..24041622930927.066263-CDS-H-elongata_contig57074:2135..2404Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig57074 2136..2404 +
1691679628.1032803-CDS-H-elongata_contig57074:2135..24041691679628.1032803-CDS-H-elongata_contig57074:2135..2404Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig57074 2136..2404 +
1622930927.084778-CDS-H-elongata_contig57074:3023..31771622930927.084778-CDS-H-elongata_contig57074:3023..3177Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig57074 3024..3177 +
1691679628.1142101-CDS-H-elongata_contig57074:3023..31771691679628.1142101-CDS-H-elongata_contig57074:3023..3177Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig57074 3024..3177 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig57074.13161.1prot_H-elongata_contig57074.13161.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig57074 2136..3177 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig57074.13161.1

>prot_H-elongata_contig57074.13161.1 ID=prot_H-elongata_contig57074.13161.1|Name=mRNA_H-elongata_contig57074.13161.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=141bp
SCPRLSFRNTNFVFKVYNEMQKINDELNAKYEDATNLLVSLKSESGMYCE
HTLDAHGRLVDIFWSTVEQQEQITRFGGCVQLDTTVFTNRYRCPLLFVVG
VDGENRSFILGQGLLRSECTETLEWILDKYEAAAGGRKPKV
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mRNA from alignment at H-elongata_contig57074:2136..3178+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig57074.13161.1 ID=mRNA_H-elongata_contig57074.13161.1|Name=mRNA_H-elongata_contig57074.13161.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1043bp|location=Sequence derived from alignment at H-elongata_contig57074:2136..3178+ (Himanthalia elongata Himel1 dioecious)
TCGTGTCCCCGCCTTTCATTTCGTAACACCAATTTCGTATTTAAGGTGTA CAACGAAATGCAAAAGATCAACGACGAGTTGAATGCGAAATACGAGGATG CAACCAACCTCCTCGTTTCTCTGAAAAGCGAGTCTGGCATGTATTGCGAG CACACGCTGGATGCCCACGGACGACTGGTGGATATATTTTGGTCCACCGT CGAACAGCAAGAACAAATTACAAGATTTGGGGGTTGTGTCCAGCTGGACA CAACGGTGTTCACGAACAGGTGTGTGTGTGTGTATGTATGTATGTGGGTT TGTCTCATCTACTCTGGCACCAGACTTTCGATCAGTGTGTAGGTTTGACA TACCAGCCTTGGTCACGCCGGAGGAAGGTCACACTGGAGTTTTTTGTTTG TTTGTTTGTTAAAATACTCCATTTTTCCTTCTGCGGTGCTTGTCTTAAAT TTTATCAAAGGGAAGGATCCAACCGCCCCTTTTCCCTCGTCGACCGTGAA GTCGAAGGTTGTGTATACTCAAGGGTAAATATGTTTTTACGTTTTTACTA CAAAATTGCGAAGAATTTCGTCCCCGTGGGGATTCGAACTCCAAACCTTG CCACTAGACAGTTTTCGAGGTCACCGCTAGACCATCCGGGTGACCAGTCA GGTGCAAACAGAAATGACGCAAAGGTACACCTGCGAGTTGTTGTACAGCT CGCGAGAGCAGGTCTGTCTGGTTTTACGACGGAATAAAGGCCGGTCCGCG GGTTGTACAATGCTCCCCTCCGTCATGCTTTTAAATCTCCACGCGCGGTT CCAAACGTTCTGAGCGTTTTCTGCTAGGAGGAGTAGGCATGGCGGGGAGT GTGTAACCCGGGCTGATGGTGTGTTCCACTGTTTGTAGGTATCGGTGTCC TCTTCTGTTCGTCGTGGGCGTCGACGGCGAAAATCGCAGCTTCATTTTGG GGCAGGGCCTGTTGCGGTCAGAGTGTACGGAGACGTTAGAGTGGATCCTC GACAAATACGAGGCCGCTGCCGGTGGGCGCAAGCCGAAGGTGA
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Coding sequence (CDS) from alignment at H-elongata_contig57074:2136..3178+

>mRNA_H-elongata_contig57074.13161.1 ID=mRNA_H-elongata_contig57074.13161.1|Name=mRNA_H-elongata_contig57074.13161.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=846bp|location=Sequence derived from alignment at H-elongata_contig57074:2136..3178+ (Himanthalia elongata Himel1 dioecious)
TCGTGTCCCCGCCTTTCATTTCGTAACACCAATTTCGTATTTAAGGTGTA
CAACGAAATGCAAAAGATCAACGACGAGTTGAATGCGAAATACGAGGATG
CAACCAACCTCCTCGTTTCTCTGAAAAGCGAGTCTGGCATGTATTGCGAG
CACACGCTGGATGCCCACGGACGACTGGTGGATATATTTTGGTCCACCGT
CGAACAGCAAGAACAAATTACAAGATTTGGGGGTTGTGTCCAGCTGGACA
CAACGGTGTTCACGAACAGTCGTGTCCCCGCCTTTCATTTCGTAACACCA
ATTTCGTATTTAAGGTGTACAACGAAATGCAAAAGATCAACGACGAGTTG
AATGCGAAATACGAGGATGCAACCAACCTCCTCGTTTCTCTGAAAAGCGA
GTCTGGCATGTATTGCGAGCACACGCTGGATGCCCACGGACGACTGGTGG
ATATATTTTGGTCCACCGTCGAACAGCAAGAACAAATTACAAGATTTGGG
GGTTGTGTCCAGCTGGACACAACGGTGTTCACGAACAGGTATCGGTGTCC
TCTTCTGTTCGTCGTGGGCGTCGACGGCGAAAATCGCAGCTTCATTTTGG
GGCAGGGCCTGTTGCGGTCAGAGTGTACGGAGACGTTAGAGTGGATCCTC
GACAAATACGAGGCCGCTGCCGGTGGGCGCAAGCCGAAGGTGGTATCGGT
GTCCTCTTCTGTTCGTCGTGGGCGTCGACGGCGAAAATCGCAGCTTCATT
TTGGGGCAGGGCCTGTTGCGGTCAGAGTGTACGGAGACGTTAGAGTGGAT
CCTCGACAAATACGAGGCCGCTGCCGGTGGGCGCAAGCCGAAGGTG
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