mRNA_H-elongata_contig57074.13161.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig57074.13161.1 vs. uniprot
Match: A0A6H5KDA0_9PHAE (MULE domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KDA0_9PHAE) HSP 1 Score: 170 bits (431), Expect = 3.100e-48 Identity = 79/140 (56.43%), Postives = 104/140 (74.29%), Query Frame = 1
Query: 4 CPRLSFRNTNFVFKVYNEMQKINDELNAKYEDATNLLVSLKSESGMYCEHTLDAHGRLVDIFWSTVEQQEQITRFGGCVQLDTTVFTNRYRCPLLFVVGVDGENRSFILGQGLLRSECTETLEWILDKYEAAAGGRKPKV 423
C FR + KVYN + KI +EL + ED+ N L L++E GM+ + T D+ GR+VD+FW+TV+QQ+++ FGGC+Q+DTTVFTNRY CPLLF+VGVD ENR +L QG+LRSE T+T +W LD YE AAGGR+PKV
Sbjct: 297 CMSDRFRTFSEPSKVYNAINKILNELYSTPEDSANFLTKLEAEPGMFVKRTFDSLGRIVDVFWATVDQQDKMATFGGCIQMDTTVFTNRYGCPLLFIVGVDDENRMCVLRQGVLRSESTKTFKWFLDSYEEAAGGRRPKV 436
BLAST of mRNA_H-elongata_contig57074.13161.1 vs. uniprot
Match: A0A6H5JGK0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JGK0_9PHAE) HSP 1 Score: 170 bits (430), Expect = 2.870e-46 Identity = 80/128 (62.50%), Postives = 98/128 (76.56%), Query Frame = 1
Query: 43 KVYNEMQKINDELNAKYEDATNLLVSLKSESGMYCEHTLDAHGRLVDIFWSTVEQQEQITRFGGCVQLDTTVFTNRYRCPLLFVVGVDGENRSFILGQGLLRSECTETLEWILDKYEAAAGG--RKPK 420
KV+N M K+ +EL EDA N L +L+S+ GMY +T D GRLV++FW+T +QQE+ RFGGC+Q+DTTVF NRYRCP+L VGVD ENRS ILGQGLLRSEC ET EW L +YE+AAGG R+PK
Sbjct: 943 KVWNFMAKVQEELYCSPEDAANFLATLRSDPGMYVANTFDDPGRLVNVFWATADQQERAARFGGCIQMDTTVFANRYRCPVLLFVGVDDENRSCILGQGLLRSECAETFEWFLTQYESAAGGWERRPK 1070
BLAST of mRNA_H-elongata_contig57074.13161.1 vs. uniprot
Match: A0A6H5KG54_9PHAE (SWIM-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KG54_9PHAE) HSP 1 Score: 169 bits (427), Expect = 6.580e-46 Identity = 80/129 (62.02%), Postives = 98/129 (75.97%), Query Frame = 1
Query: 43 KVYNEMQKINDELNAKYEDATNLLVSLKSESGMYCEHTLDAHGRLVDIFWSTVEQQEQITRFGGCVQLDTTVFTNRYRCPLLFVVGVDGENRSFILGQGLLRSECTETLEWILDKYEAAAGG--RKPKV 423
KV+N M K+ +EL EDA N L +L+S+ GMY +T D GRLV++FW+T +QQE+ RFGGC+Q+DTTVF NRY CP+L VGVD ENRS ILGQGLLRSEC ET EW L +YE+AAGG R+PKV
Sbjct: 245 KVWNFMAKVQEELYCSPEDAANFLATLRSDPGMYVANTFDDPGRLVNVFWATADQQERAARFGGCIQMDTTVFANRYGCPVLLFVGVDDENRSCILGQGLLRSECAETFEWFLTQYESAAGGWERRPKV 373
BLAST of mRNA_H-elongata_contig57074.13161.1 vs. uniprot
Match: A0A6H5KAB1_9PHAE (SWIM-type domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KAB1_9PHAE) HSP 1 Score: 162 bits (409), Expect = 6.040e-44 Identity = 76/124 (61.29%), Postives = 93/124 (75.00%), Query Frame = 1
Query: 58 MQKINDELNAKYEDATNLLVSLKSESGMYCEHTLDAHGRLVDIFWSTVEQQEQITRFGGCVQLDTTVFTNRYRCPLLFVVGVDGENRSFILGQGLLRSECTETLEWILDKYEAAAGG--RKPKV 423
M K+ +EL EDA N L +L+S+ GMY +T D GRLV++FW+T +QQE+ RFGGC+Q+DTTVF NRY CP+ VGVD ENRS ILGQGLLRSEC ET EW L +YE+AAGG R+PKV
Sbjct: 1 MAKVQEELYCSPEDAANFLATLRSDPGMYVANTFDDPGRLVNVFWATADQQERAARFGGCIQMDTTVFANRYGCPVFLFVGVDDENRSCILGQGLLRSECAETFEWFLTQYESAAGGWERRPKV 124
BLAST of mRNA_H-elongata_contig57074.13161.1 vs. uniprot
Match: A0A6H5L618_9PHAE (MULE domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L618_9PHAE) HSP 1 Score: 163 bits (412), Expect = 6.510e-44 Identity = 76/127 (59.84%), Postives = 95/127 (74.80%), Query Frame = 1
Query: 43 KVYNEMQKINDELNAKYEDATNLLVSLKSESGMYCEHTLDAHGRLVDIFWSTVEQQEQITRFGGCVQLDTTVFTNRYRCPLLFVVGVDGENRSFILGQGLLRSECTETLEWILDKYEAAAGGRKPKV 423
KVYN M I D L + EDA N L +L+SE GM+ E D+ GRL ++FW+TV+QQ +I R+G C+Q+DTTVF NRY CPLLF+VGVD ENRS IL Q LLRSECTET +WIL ++ A+G R+PKV
Sbjct: 15 KVYNAMAAIKDHLYSSPEDAANFLATLQSEPGMFVEREFDSIGRLENVFWATVDQQNKIARYGACIQMDTTVFMNRYGCPLLFIVGVDDENRSCILAQCLLRSECTETFKWILTSWDGASGDRRPKV 141
BLAST of mRNA_H-elongata_contig57074.13161.1 vs. uniprot
Match: A0A6H5JZB4_9PHAE (SWIM-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZB4_9PHAE) HSP 1 Score: 162 bits (411), Expect = 1.030e-43 Identity = 75/127 (59.06%), Postives = 100/127 (78.74%), Query Frame = 1
Query: 43 KVYNEMQKINDELNAKYEDATNLLVSLKSESGMYCEHTLDAHGRLVDIFWSTVEQQEQITRFGGCVQLDTTVFTNRYRCPLLFVVGVDGENRSFILGQGLLRSECTETLEWILDKYEAAAGGRKPKV 423
KVYN ++KI +EL + ED N L L++E GM+ + T D+ GR+VD+FW+TV+QQ+++ GC+Q+DTTVFT+RY CPLLF+VGVD ENR+ +LGQG+LRSE TET +W LD YE AAGGR+PKV
Sbjct: 342 KVYNAIKKIQNELYSTPEDGANFLAKLEAEPGMFVKRTFDSLGRIVDVFWATVDQQDKMAAT-GCMQMDTTVFTDRYGCPLLFIVGVDDENRTCVLGQGVLRSESTETFKWFLDSYEEAAGGRRPKV 467
BLAST of mRNA_H-elongata_contig57074.13161.1 vs. uniprot
Match: A0A6H5JP13_9PHAE (SWIM-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JP13_9PHAE) HSP 1 Score: 157 bits (396), Expect = 8.940e-42 Identity = 74/122 (60.66%), Postives = 93/122 (76.23%), Query Frame = 1
Query: 64 KINDELNAKYEDATNLLVSLKSESGMYCEHTLDAHGRLVDIFWSTVEQQEQITRFGGCVQLDTTVFTNRYRCPLLFVVGVDGENRSFILGQGLLRSECTETLEWILDKYEAAAGG--RKPKV 423
+I++EL EDA N L +L+S+ GMY + D GRLV++FW+T +QQE+ RFGGC+Q+DTTVF NRY CP+L VGVD ENRS ILGQGLLRSEC ET EW L +YE+AAGG R+PK+
Sbjct: 219 RISEELPLLPEDAANFLATLRSDPGMYVANIFDDPGRLVNVFWATADQQERAARFGGCIQMDTTVFANRYGCPVLLFVGVDDENRSCILGQGLLRSECAETFEWFLTQYESAAGGWERRPKM 340
BLAST of mRNA_H-elongata_contig57074.13161.1 vs. uniprot
Match: A0A6H5L3G4_9PHAE (MULE domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L3G4_9PHAE) HSP 1 Score: 148 bits (373), Expect = 3.780e-39 Identity = 62/101 (61.39%), Postives = 86/101 (85.15%), Query Frame = 1
Query: 121 LKSESGMYCEHTLDAHGRLVDIFWSTVEQQEQITRFGGCVQLDTTVFTNRYRCPLLFVVGVDGENRSFILGQGLLRSECTETLEWILDKYEAAAGGRKPKV 423
L++E GM+ + T D+ GR+VD+FW+TV+QQ+++ FGGC+Q++TTVFTNR+ CPLLF+VGVD ENR+ +LGQG+LRSE TE+ +W +D YE AAGGR+PKV
Sbjct: 352 LEAEPGMFVKRTFDSLGRIVDVFWATVDQQDKMATFGGCIQMETTVFTNRHGCPLLFIVGVDDENRTCVLGQGMLRSESTESFKWFVDSYEKAAGGRRPKV 452
BLAST of mRNA_H-elongata_contig57074.13161.1 vs. uniprot
Match: A0A6H5KWM8_9PHAE (MULE domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KWM8_9PHAE) HSP 1 Score: 145 bits (367), Expect = 5.760e-38 Identity = 81/135 (60.00%), Postives = 96/135 (71.11%), Query Frame = 1
Query: 22 RNTN-FVFKVYNEMQKINDELNAKYEDATNLLVSLKSESGMYCEHTLDAHGRLVDIFWSTVEQQEQITRFGGCVQLDTTVFTNRYRCPLLFVVGVDGENRSFILGQGLLRSECTETLEWILDKYEAAAGGRKPKV 423
R+TN + VY E+QK++DELNAK EDAT+ L SLKSE GMYC+HTLDA GRLVD+FWST+EQQ I RFGGC+QLDTTVFTN C F G D GQ CT+T E +L++YE AAGGR+PKV
Sbjct: 159 RDTNPSISSVYYEIQKLSDELNAKPEDATDFLASLKSEPGMYCDHTLDAQGRLVDVFWSTIEQQAHIARFGGCIQLDTTVFTNS-ACFCAFW-GRD------CCGQ------CTQTFERMLNRYETAAGGRRPKV 279
BLAST of mRNA_H-elongata_contig57074.13161.1 vs. uniprot
Match: A0A6H5KR58_9PHAE (MULE domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KR58_9PHAE) HSP 1 Score: 134 bits (337), Expect = 1.720e-34 Identity = 61/105 (58.10%), Postives = 81/105 (77.14%), Query Frame = 1
Query: 52 NEMQKINDELNAKYEDATNLLVSLKSESGMYCEHTLDAHGRLVDIFWSTVEQQEQITRFGGCVQLDTTVFTNRYRCPLLFVVGVDGENRSFILGQGLLRSECTET 366
N + KI E + E N+L L++ESGM+ + T D+ GR+VD+FW+TV+QQ+++ FGGC+Q+DTT FTNRY CPLLF+VGVD ENRS +LGQG+LRSE TET
Sbjct: 272 NAINKIRYESYSTPEHGANVLAKLEAESGMFVKRTFDSLGRIVDVFWATVDQQDKMATFGGCIQMDTTAFTNRYGCPLLFIVGVDDENRSCVLGQGVLRSESTET 376 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig57074.13161.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig57074.13161.1 >prot_H-elongata_contig57074.13161.1 ID=prot_H-elongata_contig57074.13161.1|Name=mRNA_H-elongata_contig57074.13161.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=141bp SCPRLSFRNTNFVFKVYNEMQKINDELNAKYEDATNLLVSLKSESGMYCEback to top mRNA from alignment at H-elongata_contig57074:2136..3178+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig57074.13161.1 ID=mRNA_H-elongata_contig57074.13161.1|Name=mRNA_H-elongata_contig57074.13161.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1043bp|location=Sequence derived from alignment at H-elongata_contig57074:2136..3178+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig57074:2136..3178+ >mRNA_H-elongata_contig57074.13161.1 ID=mRNA_H-elongata_contig57074.13161.1|Name=mRNA_H-elongata_contig57074.13161.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=846bp|location=Sequence derived from alignment at H-elongata_contig57074:2136..3178+ (Himanthalia elongata Himel1 dioecious)back to top |