mRNA_H-elongata_contig56968.13152.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig56968.13152.1
Unique NamemRNA_H-elongata_contig56968.13152.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig56968.13152.1 vs. uniprot
Match: D7G930_ECTSI (RRM domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G930_ECTSI)

HSP 1 Score: 64.3 bits (155), Expect = 7.650e-11
Identity = 28/36 (77.78%), Postives = 32/36 (88.89%), Query Frame = 1 
Query:    7 PVTAASLSRLLQMGHVDGMTMVWTTGMVEWKPLGEV 114
            PV+AA+LSRLL+ G VDGMTM WTTGM +WKPLGEV
Sbjct:  141 PVSAAALSRLLRQGEVDGMTMAWTTGMGDWKPLGEV 176
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BLAST of mRNA_H-elongata_contig56968.13152.1 vs. uniprot
Match: A0A2P4Y8Q2_9STRA (Splicing factor U2AF-associated protein 2 n=1 Tax=Phytophthora palmivora var. palmivora TaxID=611791 RepID=A0A2P4Y8Q2_9STRA)

HSP 1 Score: 47.8 bits (112), Expect = 5.370e-5
Identity = 20/36 (55.56%), Postives = 25/36 (69.44%), Query Frame = 1 
Query:    7 PVTAASLSRLLQMGHVDGMTMVWTTGMVEWKPLGEV 114
            PVT   L +L   G VDGMT+VWT  + +WKP+GEV
Sbjct:   17 PVTTQQLVKLFVDGEVDGMTLVWTQELDDWKPIGEV 52
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BLAST of mRNA_H-elongata_contig56968.13152.1 vs. uniprot
Match: A0A662XQN9_9STRA (RRM domain-containing protein n=2 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662XQN9_9STRA)

HSP 1 Score: 47.8 bits (112), Expect = 5.370e-5
Identity = 21/38 (55.26%), Postives = 27/38 (71.05%), Query Frame = 1 
Query:    1 SRPVTAASLSRLLQMGHVDGMTMVWTTGMVEWKPLGEV 114
            S PV+  +L +L   G VDGMT+VW+  M EWKP+GEV
Sbjct:  107 SGPVSTQNLVKLFVDGAVDGMTLVWSQDMDEWKPIGEV 144
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig56968.13152.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D7G930_ECTSI7.650e-1177.78RRM domain-containing protein n=2 Tax=Ectocarpus T... [more]
A0A2P4Y8Q2_9STRA5.370e-555.56Splicing factor U2AF-associated protein 2 n=1 Tax=... [more]
A0A662XQN9_9STRA5.370e-555.26RRM domain-containing protein n=2 Tax=Nothophytoph... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig56968contigH-elongata_contig56968:535..669 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score64.7
Seed ortholog evalue1.3e-08
Seed eggNOG ortholog2880.D7G930
KEGG koko:K13093,ko:K13098
KEGG Pathwayko05202,map05202
EggNOG free text desc.mRNA splicing, via spliceosome
EggNOG OGsKOG1548@1,KOG1548@2759
COG Functional cat.E
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03041
Hectar predicted targeting categoryno signal peptide or anchor
Ec32 ortholog descriptionRNA recognition motif domain
Ec32 orthologEc-15_002100.1
Exons1
Model size135
Cds size135
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930925.9181652-CDS-H-elongata_contig56968:534..6691622930925.9181652-CDS-H-elongata_contig56968:534..669Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig56968 535..669 -
1691679627.6549788-CDS-H-elongata_contig56968:534..6691691679627.6549788-CDS-H-elongata_contig56968:534..669Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig56968 535..669 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig56968.13152.1prot_H-elongata_contig56968.13152.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig56968 535..669 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig56968.13152.1

>prot_H-elongata_contig56968.13152.1 ID=prot_H-elongata_contig56968.13152.1|Name=mRNA_H-elongata_contig56968.13152.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=45bp
SRPVTAASLSRLLQMGHVDGMTMVWTTGMVEWKPLGEVRRVFGKR
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mRNA from alignment at H-elongata_contig56968:535..669-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig56968.13152.1 ID=mRNA_H-elongata_contig56968.13152.1|Name=mRNA_H-elongata_contig56968.13152.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=135bp|location=Sequence derived from alignment at H-elongata_contig56968:535..669- (Himanthalia elongata Himel1 dioecious)
AGCAGGCCCGTGACCGCGGCATCTCTGTCTCGGCTCCTTCAGATGGGACA
CGTGGACGGCATGACCATGGTGTGGACGACAGGGATGGTGGAATGGAAAC
CCCTCGGAGAGGTGCGGCGTGTTTTTGGTAAACGG
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Coding sequence (CDS) from alignment at H-elongata_contig56968:535..669-

>mRNA_H-elongata_contig56968.13152.1 ID=mRNA_H-elongata_contig56968.13152.1|Name=mRNA_H-elongata_contig56968.13152.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=270bp|location=Sequence derived from alignment at H-elongata_contig56968:535..669- (Himanthalia elongata Himel1 dioecious)
AGCAGGCCCGTGACCGCGGCATCTCTGTCTCGGCTCCTTCAGATGGGACA
CGTGGACGGCATGACCATGGTGTGGACGACAGGGATGGTGGAATGGAAAC
CCCTCGGAGAGGTGCGGCGTGTTTTTGGTAAACGGAGCAGGCCCGTGACC
GCGGCATCTCTGTCTCGGCTCCTTCAGATGGGACACGTGGACGGCATGAC
CATGGTGTGGACGACAGGGATGGTGGAATGGAAACCCCTCGGAGAGGTGC
GGCGTGTTTTTGGTAAACGG
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