mRNA_H-elongata_contig56795.13130.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig56795.13130.1
Unique NamemRNA_H-elongata_contig56795.13130.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig56795.13130.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig56795contigH-elongata_contig56795:690..1144 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size455
Cds size327
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930923.120157-CDS-H-elongata_contig56795:689..10161622930923.120157-CDS-H-elongata_contig56795:689..1016Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig56795 690..1016 +
1691679626.2985754-CDS-H-elongata_contig56795:689..10161691679626.2985754-CDS-H-elongata_contig56795:689..1016Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig56795 690..1016 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930923.1363182-UTR-H-elongata_contig56795:1016..11441622930923.1363182-UTR-H-elongata_contig56795:1016..1144Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig56795 1017..1144 +
1691679626.3074932-UTR-H-elongata_contig56795:1016..11441691679626.3074932-UTR-H-elongata_contig56795:1016..1144Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig56795 1017..1144 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig56795.13130.1prot_H-elongata_contig56795.13130.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig56795 690..1016 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig56795.13130.1

>prot_H-elongata_contig56795.13130.1 ID=prot_H-elongata_contig56795.13130.1|Name=mRNA_H-elongata_contig56795.13130.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=109bp
MYVPSCVSKGYYRTIAVGRRSHATKALTASGTSFLKASFVRSKCPANIGN
KAFPKKRHGPVARGLRPFLKVTARSKKTNQIKVGRNKPYPLQLQTYWHLQ
NTGISRRP*
back to top

mRNA from alignment at H-elongata_contig56795:690..1144+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig56795.13130.1 ID=mRNA_H-elongata_contig56795.13130.1|Name=mRNA_H-elongata_contig56795.13130.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=455bp|location=Sequence derived from alignment at H-elongata_contig56795:690..1144+ (Himanthalia elongata Himel1 dioecious)
ATGTATGTGCCTTCTTGCGTGTCAAAGGGCTATTATCGTACAATTGCTGT
GGGCCGCAGATCACACGCGACAAAAGCTTTGACAGCATCGGGGACATCAT
TCCTAAAGGCCTCCTTCGTCCGTTCAAAATGCCCAGCGAACATCGGTAAT
AAAGCCTTCCCTAAGAAGAGACATGGGCCAGTTGCTCGCGGCTTACGTCC
TTTTTTGAAAGTAACGGCCAGAAGCAAAAAGACAAACCAAATCAAGGTTG
GGCGCAACAAACCATACCCGCTTCAGCTTCAGACATATTGGCATCTCCAA
AACACAGGAATCTCACGTCGACCTTGACCGGAGGACTTCCGGTACCCGAT
TAGCACAGTACTAGGTAGAGTTGGCGCCAGGTACATATTTCGCGATTTTT
TTCTCTCGGGAAGCTTACTTTCGATTTTTTTTAAAGCAGTAAGTATAAAA
CTAAC
back to top

Coding sequence (CDS) from alignment at H-elongata_contig56795:690..1144+

>mRNA_H-elongata_contig56795.13130.1 ID=mRNA_H-elongata_contig56795.13130.1|Name=mRNA_H-elongata_contig56795.13130.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=654bp|location=Sequence derived from alignment at H-elongata_contig56795:690..1144+ (Himanthalia elongata Himel1 dioecious)
ATGTATGTGCCTTCTTGCGTGTCAAAGGGCTATTATCGTACAATTGCTGT
GGGCCGCAGATCACACGCGACAAAAGCTTTGACAGCATCGGGGACATCAT
TCCTAAAGGCCTCCTTCGTCCGTTCAAAATGCCCAGCGAACATCGGTAAT
AAAGCCTTCCCTAAGAAGAGACATGGGCCAGTTGCTCGCGGCTTACGTCC
TTTTTTGAAAGTAACGGCCAGAAGCAAAAAGACAAACCAAATCAAGGTTG
GGCGCAACAAACCATACCCGCTTCAGCTTCAGACATATTGGCATCTCCAA
AACACAGGAATCTCACGTCGACCTTGAATGTATGTGCCTTCTTGCGTGTC
AAAGGGCTATTATCGTACAATTGCTGTGGGCCGCAGATCACACGCGACAA
AAGCTTTGACAGCATCGGGGACATCATTCCTAAAGGCCTCCTTCGTCCGT
TCAAAATGCCCAGCGAACATCGGTAATAAAGCCTTCCCTAAGAAGAGACA
TGGGCCAGTTGCTCGCGGCTTACGTCCTTTTTTGAAAGTAACGGCCAGAA
GCAAAAAGACAAACCAAATCAAGGTTGGGCGCAACAAACCATACCCGCTT
CAGCTTCAGACATATTGGCATCTCCAAAACACAGGAATCTCACGTCGACC
TTGA
back to top