mRNA_H-elongata_contig56792.13129.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig56792.13129.1 vs. uniprot
Match: D7G0W9_ECTSI (Peptidyl-prolyl cis-trans isomerase n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G0W9_ECTSI) HSP 1 Score: 189 bits (480), Expect = 6.510e-58 Identity = 94/112 (83.93%), Postives = 101/112 (90.18%), Query Frame = 1
Query: 1 RVVTGTGIMGGDVEGAGGARSHSAF-GSRFFPDEAFFIPHSAPGLLTTANPGVHSNGSQFYITTEPAGHLDGRSVAFGRVTSGMEVVRALHGMYSIRGKPVSEITVARCGEI 333
RVVTGTGIMGGDVEG GG RSHSAF G RFFPDEAF IPH+APGLLT AN G+H+NGSQFYITTE AGHLDGRSVAFGRVT G+EVVRA++GMYSIRGKPVSEIT+ CGEI
Sbjct: 173 RVVTGTGIMGGDVEGYGGKRSHSAFSGMRFFPDEAFLIPHTAPGLLTMANSGLHTNGSQFYITTEAAGHLDGRSVAFGRVTKGLEVVRAVYGMYSIRGKPVSEITIEECGEI 284
BLAST of mRNA_H-elongata_contig56792.13129.1 vs. uniprot
Match: A0A836C8D9_9STRA (Peptidyl-prolyl cis-trans isomerase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C8D9_9STRA) HSP 1 Score: 140 bits (354), Expect = 1.460e-39 Identity = 63/104 (60.58%), Postives = 80/104 (76.92%), Query Frame = 1
Query: 13 GTGIMGGDVEGAGGARSHSAFGSRFFPDEAFFIPHSAPGLLTTANPGVHSNGSQFYITTEPAGHLDGRSVAFGRVTSGMEVVRALHGMYSIRGKPVSEITVARC 324
G G+MGGDVEG G +SHS G R+F DE FFIPHS+ GLLT AN G+ +NGSQFY+T PA H+DGRSVAFGRV GM+VVR + G++S++ KPVS++ + C
Sbjct: 121 GVGLMGGDVEGGNGKKSHSGLGKRYFRDEGFFIPHSSEGLLTMANSGIDTNGSQFYVTIGPAPHMDGRSVAFGRVVGGMDVVRRVFGLFSVKAKPVSKVVITDC 224
BLAST of mRNA_H-elongata_contig56792.13129.1 vs. uniprot
Match: F0Y6J0_AURAN (Peptidyl-prolyl cis-trans isomerase (Fragment) n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0Y6J0_AURAN) HSP 1 Score: 121 bits (303), Expect = 1.260e-32 Identity = 63/113 (55.75%), Postives = 81/113 (71.68%), Query Frame = 1
Query: 1 RVVTGTGIMGGDVEGAGGARSHSAF-GSRFFPDEAFFIPHSAPGLLTTANPGVHSNGSQFYITTEPAGHLDGRSVAFGRVTSGMEVVRALHG-MYSIRGKPVSEITVARCGEI 333
RVV G G++GG V+ GG SHSAF G R F DE FF+PH+ PGLL+ AN GV +NGSQFY+TT A H+DGR VAFGRV +G++VV+ L +Y+ RG PV + +A CG +
Sbjct: 54 RVVKGVGLLGGVVDAPGG--SHSAFAGRRVFADEGFFVPHAEPGLLSMANAGVDTNGSQFYLTTAAAPHMDGRCVAFGRVAAGLDVVQTLADTLYTQRGVPVEHVEIAACGTL 164
BLAST of mRNA_H-elongata_contig56792.13129.1 vs. uniprot
Match: A0A7S4EDH8_9STRA (Peptidyl-prolyl cis-trans isomerase n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S4EDH8_9STRA) HSP 1 Score: 119 bits (299), Expect = 2.590e-31 Identity = 63/113 (55.75%), Postives = 78/113 (69.03%), Query Frame = 1
Query: 1 RVVTGTGIMGGDVEGAGGARSHSAFGSR-FFPDEAFFIPHSAPGLLTTANPGVHSNGSQFYITTEPAGHLDGRSVAFGRVTSGMEVVRALH-GMYSIRGKPVSEITVARCGEI 333
RVV G G++GG + A G S SAF R F DE FF+PH+ PGLLT A+ GV NGSQFY+T EPA HLDGR VAFGR+ G++VVR LH +Y+ RG PV ++ V CG +
Sbjct: 112 RVVKGVGLLGGALPDAPGG-SRSAFADRPLFADEGFFVPHAEPGLLTMASSGVDGNGSQFYVTIEPAPHLDGRCVAFGRLVEGLDVVRHLHDSLYTQRGVPVEKVVVEACGVV 223
BLAST of mRNA_H-elongata_contig56792.13129.1 vs. uniprot
Match: A0A7S2BM91_9STRA (Peptidyl-prolyl cis-trans isomerase n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2BM91_9STRA) HSP 1 Score: 119 bits (299), Expect = 8.610e-31 Identity = 61/114 (53.51%), Postives = 80/114 (70.18%), Query Frame = 1
Query: 4 VVTGTGIMGGDVEGAGGARSHSAFGSRFFPDEAFFIPHSAPGLLTTANPGVHSNGSQFYITTEPAGHLDGRSVAFGRVTSGMEVVRALHGMYSIRGKPVSEITVARCGEIGQTG 345
VV + I+ GDVE G SHSA G+R+F DEA +PH+ G+++ N GV +NGSQFYITT P+ LDG SVAFGRVTSGM+VV ++ ++SIRG PVS +TV G + + G
Sbjct: 156 VVKDSAIVAGDVELKTGKGSHSALGTRYFDDEALVMPHTEAGIVSMVNGGVDTNGSQFYITTAPSPQLDGYSVAFGRVTSGMDVVGSITNLFSIRGVPVSTVTVTAAGVLREGG 269
BLAST of mRNA_H-elongata_contig56792.13129.1 vs. uniprot
Match: W7TUT6_9STRA (Peptidyl-prolyl cis-trans isomerase n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TUT6_9STRA) HSP 1 Score: 117 bits (293), Expect = 5.660e-30 Identity = 61/124 (49.19%), Postives = 77/124 (62.10%), Query Frame = 1
Query: 1 RVVTGTGIMGGDVEGA---------------GGARSHSAFGSRFFPDEAFFIPHSAPGLLTTANPGVHSNGSQFYITTEPAGHLDGRSVAFGRVTSGMEVVRALHGMYSIRGKPVSEITVARCG 327
RVV G GI+GGD+ A GGA +HS G RFFPDE+F IPH+ PGLL+ + G H NGS F+I+T HLDGRSV FGRV G+EV+ A+ Y+IRG+PV+ + V G
Sbjct: 140 RVVKGAGIVGGDLSTARAPPSSGAIRPRQRQGGAGNHSGLGPRFFPDESFQIPHTGPGLLSMVSAGAHRNGSVFHISTHACPHLDGRSVVFGRVVGGVEVLEAVANTYTIRGRPVAVVRVEEAG 263
BLAST of mRNA_H-elongata_contig56792.13129.1 vs. uniprot
Match: A0A4D9CP74_9STRA (PPIase cyclophilin-type domain-containing protein n=3 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9CP74_9STRA) HSP 1 Score: 117 bits (293), Expect = 4.700e-29 Identity = 61/124 (49.19%), Postives = 77/124 (62.10%), Query Frame = 1
Query: 1 RVVTGTGIMGGDVEGA---------------GGARSHSAFGSRFFPDEAFFIPHSAPGLLTTANPGVHSNGSQFYITTEPAGHLDGRSVAFGRVTSGMEVVRALHGMYSIRGKPVSEITVARCG 327
RVV G GI+GGD+ A GGA +HS G RFFPDE+F IPH+ PGLL+ + G H NGS F+I+T HLDGRSV FGRV G+EV+ A+ Y+IRG+PV+ + V G
Sbjct: 255 RVVKGAGIVGGDLSTARAPPSSGAIRPRQRQGGAGNHSGLGPRFFPDESFQIPHTGPGLLSMVSAGAHRNGSVFHISTHACPHLDGRSVVFGRVVGGVEVLEAVANTYTIRGRPVAVVRVEEAG 378
BLAST of mRNA_H-elongata_contig56792.13129.1 vs. uniprot
Match: A0A024TP67_9STRA (Peptidyl-prolyl cis-trans isomerase n=2 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024TP67_9STRA) HSP 1 Score: 108 bits (270), Expect = 4.340e-27 Identity = 47/102 (46.08%), Postives = 74/102 (72.55%), Query Frame = 1
Query: 22 IMGGDVEGAGGARSHSAFGSRFFPDEAFFIPHSAPGLLTTANPGVHSNGSQFYITTEPAGHLDGRSVAFGRVTSGMEVVRALHGMYSIRGKPVSEITVARCG 327
+ GGD+ G +A G+R+F DE F + ++ PG++ AN GV++NGSQF+IT++P HL+GR+VAFG+V G++VVR + +YS++GKP++E+ V CG
Sbjct: 110 VSGGDITHGNGQGGMTASGARYFDDENFALRYTEPGVVGMANSGVNTNGSQFFITSKPMPHLNGRNVAFGKVVDGLDVVRKIENVYSVKGKPLTEVVVVDCG 211
BLAST of mRNA_H-elongata_contig56792.13129.1 vs. uniprot
Match: W4G7R5_9STRA (Peptidyl-prolyl cis-trans isomerase n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=W4G7R5_9STRA) HSP 1 Score: 105 bits (263), Expect = 4.520e-26 Identity = 48/102 (47.06%), Postives = 72/102 (70.59%), Query Frame = 1
Query: 22 IMGGDVEGAGGARSHSAFGSRFFPDEAFFIPHSAPGLLTTANPGVHSNGSQFYITTEPAGHLDGRSVAFGRVTSGMEVVRALHGMYSIRGKPVSEITVARCG 327
+ GGD+ G +A G+R F DE F + ++ G+L AN GV++NGSQF+IT++P HL+GR+VAFG+V GM+VVR + +YS++GKP+++I V CG
Sbjct: 107 VTGGDITAGNGKGGVTASGARHFDDENFALRYTEAGVLGMANSGVNTNGSQFFITSKPMPHLNGRNVAFGKVVEGMDVVRKIENVYSVKGKPLTDIVVVDCG 208
BLAST of mRNA_H-elongata_contig56792.13129.1 vs. uniprot
Match: A0A7S1CQB8_9STRA (Peptidyl-prolyl cis-trans isomerase n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1CQB8_9STRA) HSP 1 Score: 103 bits (256), Expect = 5.770e-26 Identity = 49/110 (44.55%), Postives = 72/110 (65.45%), Query Frame = 1
Query: 1 RVVTGTGIMGGDVEGAGGARSHSAFGSRFFPDEAFFIPHSAPGLLTTANPGVHSNGSQFYITTEPAGHLDGRSVAFGRVTSGMEVVRALHGMYSIRGKPVSEITVARCGE 330
+VV G ++GGDVE G+ HSA G RFF DE F H+ G+L+ AN G +N SQF +T + LDGR+VAFGRV G+E++ + ++++ GKPV+++ + CGE
Sbjct: 17 KVVKGFVVVGGDVEAGDGSGGHSALGERFFEDENFGGRHTTRGVLSMANAGADANSSQFLVTGDAMPQLDGRNVAFGRVVDGLELLDEVEEVFTVNGKPVTDVRITDCGE 126 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig56792.13129.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig56792.13129.1 >prot_H-elongata_contig56792.13129.1 ID=prot_H-elongata_contig56792.13129.1|Name=mRNA_H-elongata_contig56792.13129.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=113bp MGGDVEGAGGARSHSAFGSRFFPDEAFFIPHSAPGLLTTANPGVHSNGSQback to top mRNA from alignment at H-elongata_contig56792:2111..2926+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig56792.13129.1 ID=mRNA_H-elongata_contig56792.13129.1|Name=mRNA_H-elongata_contig56792.13129.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=816bp|location=Sequence derived from alignment at H-elongata_contig56792:2111..2926+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig56792:2111..2926+ >mRNA_H-elongata_contig56792.13129.1 ID=mRNA_H-elongata_contig56792.13129.1|Name=mRNA_H-elongata_contig56792.13129.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=678bp|location=Sequence derived from alignment at H-elongata_contig56792:2111..2926+ (Himanthalia elongata Himel1 dioecious)back to top |