mRNA_H-elongata_contig56778.13126.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig56778.13126.1
Unique NamemRNA_H-elongata_contig56778.13126.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig56778.13126.1 vs. uniprot
Match: D8LCS5_ECTSI (Dimer_Tnp_hAT domain-containing protein n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LCS5_ECTSI)

HSP 1 Score: 316 bits (810), Expect = 1.350e-98
Identity = 205/520 (39.42%), Postives = 282/520 (54.23%), Query Frame = 1
Query:   19 LLKGKHICITTDGWTSCANDTYMSVTISLITSSWKLVVISVECSKSAGTTTGEVVAEGVKAAVAKHGLEGKVIVITTDCEPSMVKMGRLLK-DSNACVHVGCTNHRLENTSSIVFNGSGVSKAMALARGLVKHYSTSSQMANCLAQFVRIYLGSEKKKVIQDVAIRWWPTCSMVRRLLELRRAIIKHEEEDKLAPMLTSVDWAILMIVLPILEPFVKTQTQLEGDQYVTGSLVVPFIFDLHMVLNDAVDDLSELAASNDADITAVRTAVI-------------------DILTYREGSRRKPRGLKPLQVLAIALDPRTKMRYGVEDEEKPKVWKFMQEAVVEIAV-KVREEKSPTGFSPQAPAAXXXXXXXXXXXQVASARKXRRGGGF----------------------------------MEAFQVTGGLKMYEPGKVGEDENKCYVVYLDPLDWWRVKRKNVPYLASLARRVLTIPT-QAESKRLFFCAGNVVTKNRNGLCPKIVKLLVLLRHSW 1410
            +L  + + ITTDGWTS  N++YMS+T++ I   WKL  +S++C+K  GTTTGE +A  V   V +H L G+VI   TDCEPSM+K GRLL+ D +   H+GC+NHR+E+T+S VFNG  +  A+ LAR LV  Y  SSQMA  L Q   I L  E   V+QDV  RWW T +MV RLL L +AI  HE  D++ P+L+  DW +L ++ PIL PF+K Q  LEG QYVTGS+ +  + +L   L  A+ DL  +A     + T      +                   +IL YREG RR+P+G K  QV A ALDPR K  YG++  E   VW+ +  A V+IA+ K   +K+P   S + PA+               A K  R   F                                  + AF+   G+++++  K    + K   V+ +PLD WR K+   P LA+LARRVL IP+ QA+S+R+F  AG  VT  R+ L  + V+LLV LR+ W
Sbjct:   35 MLDAEFVAITTDGWTSRNNESYMSLTVAYIDYEWKLHHLSLDCAKHTGTTTGEDLAALVAGMVERHDLTGRVIACVTDCEPSMIKAGRLLEVDGSTISHIGCSNHRMESTTSSVFNGRSLG-ALGLARTLVGRYKKSSQMAARLVQLCGI-LQMEPLSVMQDVETRWWSTWAMVVRLLYLMKAIKLHESMDEVHPLLSDTDWEVLRLIEPILRPFMKAQKDLEGAQYVTGSMTIGKMAELREGLEAAITDLKAVAQQGLKETTQKAMEAVRPDAEALMADFTNRWGDGSNILEYREGKRRQPQGFKRKQVYATALDPRAKHLYGIQQREHAGVWRAVASAAVDIALGKHAGDKAPA--SAEKPASDPVQTQPAPLGGGQGASKRPRMSAFEAAAAXXXXXXXXXXXXXSADEKREQLVAIVDMEVSAFKAAPGIRVWDMQKTNTGDKK---VFNNPLDRWRKKQLEYPLLAALARRVLAIPSSQAQSERVFSTAGLTVTPTRSRLLDENVELLVYLRNVW 547          
BLAST of mRNA_H-elongata_contig56778.13126.1 vs. uniprot
Match: A0A6H5L7Y8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L7Y8_9PHAE)

HSP 1 Score: 301 bits (771), Expect = 2.440e-90
Identity = 184/395 (46.58%), Postives = 225/395 (56.96%), Query Frame = 1
Query:    1 MTKIFNLLKGKHICITTDGWTSCANDTYMSVTISLITSSWKLVVISVECSKSAGTTTGEVVAEGVKAAVAKHGLEGKVIVITTDCEPSMVKMGRLLK-DSNACVHVGCTNHRLENTSSIVFNGSGVSKAMALARGLVKHYSTSSQMANCLAQFVRIYLGSEKKKVIQDVAIRWWPTCSMVRRLLELRRAIIKHEEEDKLAPMLTSVDWAILMIVLPILEPFVKTQTQLEGDQYVTGSLVVPFIFDLHMVLNDAVDDLSELAASNDADITAVRTAVI------------------DILTYREGSRRKPRGLKPLQVLAIALDPRTKMRYGVEDEEKPKVWKFMQEAVVEIAVKVRE-EKSPTGFSPQAP-AAXXXXXXXXXXXQVASARKXRRGGG 1122
            M K+  L++G+ +CIT+DGWTSCANDTYMS+T +LITS+WKLV +SV+CSKS GTTTG+ +A G+KA VAKHGL GKV  +TTDCEPSMVKMGRLL  D+     +GC N+RLE+TSSIVFNG  V K M LARGLV  Y TSSQ A+ L QFV+ YLG + K+VIQDV                                                                VTGSLVVPFI+DL   L DA+DDL EL   +DA++     AV+                  +IL Y+EG RR+P G KP+ VLA ALDPRTK+ YGV+++EK  VWK +QE  V+IAV+ R  E S    S Q P AA              S+RK  R GG
Sbjct:   29 MEKVSRLIEGEQVCITSDGWTSCANDTYMSLTFTLITSAWKLVTLSVDCSKSEGTTTGDALAAGIKATVAKHGLTGKVTAVTTDCEPSMVKMGRLLAGDATVSTQIGCCNYRLESTSSIVFNGPRVKKVMVLARGLVTRYPTSSQAADRLKQFVKTYLGVDNKRVIQDV----------------------------------------------------------------VTGSLVVPFIYDLRNSLEDAIDDLVELPPDSDANVNTAWAAVMPCIKALRDDYIDRWGDGHNILIYKEGPRRQPGGFKPVHVLATALDPRTKIPYGVDEDEKADVWKLVQEEAVKIAVETRNAENSQRTSSQQGPEAAAGPALSSTSAGAEESSRKRPRVGG 359          
BLAST of mRNA_H-elongata_contig56778.13126.1 vs. uniprot
Match: A0A6H5KUY5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KUY5_9PHAE)

HSP 1 Score: 290 bits (742), Expect = 1.060e-88
Identity = 186/488 (38.11%), Postives = 266/488 (54.51%), Query Frame = 1
Query:   19 LLKGKHICITTDGWTSCANDTYMSVTISLITSSWKLVVISVECSKSAGTTTGEVVAEGVKAAVAKHGLEGKVIVITTDCEPSMVKMGRLLKDSNACV-HVGCTNHRLENTSSIVFNGSGVSKAMALARGLVKHYSTSSQMANCLAQFVRIYLGSEKKKVIQDVAIRWWPTCSMVRRLLELRRAIIKHEEEDKLAPMLTSVDWAILMIVLPILEPFVKTQTQLEGDQYVTGSLVVPFIFDLHMVLNDAVDDLSE-----LAASNDADITAVRTAV--------------IDILTYREGSRRKPRGLKPLQVLAIALDPRTKMRYGVEDEEKPKVWKFMQEAVVEIAVKVREEKSPTGFSPQAPAAXXXXXXXXXXXQVASARKXR------------------RGGGFME---------------AFQVTGGLKMYEPGKVGEDENKCYVVYLDPLDWWRVKRKNVPYLASLARRVLTIPT-QAESKRL 1320
            +L  +++ ITTDGWTS +N++YMS+T++ I   W+L  +S+ C+K  G+T GE +A  + + + +HGL G+V    TDCEPSMVK GRLL+   + + H+GC+NHR+E+T+S VFNG  +  A+A AR +V  Y  SSQM+  LA F+ I L      V+QDV  RWW + +M+ RLL L +AI  HE  D +AP+L+  DW +L ++ PIL PF++ Q  LEG +YVTGS+ VP I +L   L  A+ DL       ++AS    + AV                    IL YREG RR+P+G K  QV A A+DPR K  YG+   E   VW+ +    V+IA + +     T  S  APAA              + ++ R                   GG  ++               +FQ T G+ ++  G  G+       VY DPLDWWR ++   P+LA+LARRVL IP+ QA S+R+
Sbjct:   71 MLDDEYVAITTDGWTSRSNESYMSLTVAYIDVGWQLHHLSLNCTKHTGSTHGEDLAREITSMIERHGLTGRVTACVTDCEPSMVKAGRLLEVGGSNLEHIGCSNHRMESTTSSVFNGKSLG-ALAKARAVVGRYKRSSQMSGRLAVFIGI-LKLSPLSVLQDVETRWWSSWAMIERLLYLMKAIKLHESTDNIAPVLSETDWEVLRLIEPILRPFMQAQKDLEGAKYVTGSMTVPKIGELRNGLEAAIADLRATDRFGISASTREAMEAVLPDAEALWEDFLNRWGDGSSILEYREGKRRQPQGFKLQQVCATAVDPRAKHLYGIRQAEHASVWRAVATKAVDIAAE-KFSSDNTATSGSAPAAQPVGTPPVAPGGQGAPKRARLSAFEAAAAAHAGAAASSAGGQTLDEKREQLASVVDLEVASFQTTPGISIWYWGTDGKK------VYNDPLDWWRTRQMEFPHLAALARRVLAIPSSQAHSERV 549          
BLAST of mRNA_H-elongata_contig56778.13126.1 vs. uniprot
Match: A0A6H5JHP9_9PHAE (Autophagy protein 5 n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHP9_9PHAE)

HSP 1 Score: 296 bits (758), Expect = 1.970e-87
Identity = 212/551 (38.48%), Postives = 290/551 (52.63%), Query Frame = 1
Query:   22 LKGKHICITTDGWTSCANDTYMSVTISLITSSWKLVVISVECSKSAGTTTGEVVAEGVKAAVAKHGLEGKVIVITTDCEPSMVKMGRLLKDSNACVHVGCTNHRLENTSSIVFNGSGVSKAMALARGLVKHYSTSSQMANCLAQFVRIYLGSEKKKVIQDVAIRWWPTCSMVRRLLELRRAIIKHEEEDKLAPMLTSVDWAILMIVLPILEPFVKTQTQLEGDQYVTGSLVVPFIFDLHMVLNDAVDDLSELAASNDADITAVRTAVI------------------DILTYREGSRRKPRGLKPLQVLAIALDPRTKMRYGVEDEEKPKVWKFMQEAVVEIAVKVREEKSP-----------------------------------------------TGFS----PQAPAAXXXXXXXXXXXQV--------------ASARKXRRG-----GGFMEAFQVTGGLKMYEPGKVGEDENKCYVVYLDPLDWWRVKRKNVPYLASLARRVLTIPT-QAESKRLFFCAGNVVTKNRNGLCPKIVKLLVLLRHS 1407
            + G+H+ +T+DGWT  +NDTYMS T + I+S++ LV + +EC K    T GE + E VKA +A++GL G+ + ITTDCE SMVK GRLL+++    H+GC  HRLE+ +S  F G GVSKA+ALARG+V  Y+ SSQ ++ L Q   I +  E+K V+QDV  RWW T   + RL+ LRR I +HE  D   P+L   DW +L +V  +L+PF+  Q  LE  + VT  LV P+I DL   L++AV+ L   +   ++ +   +  VI                  D+L Y EG RR+PRG K  QVLA AL PR+K  YG+E+ E   VW       V++A++ +  +                                                  G S    P  PA XXXXXXXXXXX                AS+   RR         ++AF++T GL +    K  E   K       PL+WWRVK +  P LASLARRVL IP  QA+S+R+F  AG VVTK R  + P+ V L+V LR++
Sbjct:    1 MTGEHVALTSDGWTPASNDTYMSFTCTYISSNFDLVALCLECKKHGWRTAGEDLVEAVKAMIARNGLTGRTVAITTDCELSMVKAGRLLEENEGVTHLGCFCHRLESITSQAFGGPGVSKALALARGVVTRYTISSQASDRLEQVCDI-VQVERKNVVQDVETRWWSTYVSICRLISLRRPITEHEIIDSTPPLLKEKDWEVLQLVESLLKPFMTAQKHLEASKEVTVRLVSPYIADLQDGLDEAVERLQAHSCPAESIVAEAKKDVILCAQALQTDLSRRWGDRTDVLVYTEGPRRQPRGFKKEQVLATALGPRSKSLYGIEETEHSDVWDAGANEAVKVAIEAKATEDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTQSAGASSSPIPVEPAXXXXXXXXXXXXXXXXXXAHGDKQQSANASSSPLRRQMESIISREVDAFKITPGLAVSWEEKGQEVRGK-------PLEWWRVKAREYPKLASLARRVLCIPAFQAQSERVFSSAGLVVTKTRARMDPENVGLMVFLRNT 543          
BLAST of mRNA_H-elongata_contig56778.13126.1 vs. uniprot
Match: A0A6H5JJV8_9PHAE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJV8_9PHAE)

HSP 1 Score: 282 bits (721), Expect = 2.930e-86
Identity = 191/475 (40.21%), Postives = 269/475 (56.63%), Query Frame = 1
Query:    7 KIFNLLKGKHICITTDGWTSCANDTYMSVTISLITSSWKLVVISVECSKSAGTTTGEVVAEGVKAAVAKHGLEGKVIVITTDCEPSMVKMGRLLKDSNACVHVGCTNHRLENTSSIVFNGSGVSKAMALARGLVKHYSTSSQMANCLAQFVRIYLGSEKKKVIQDVAIRWWPTCSMVRRLLELRRAIIKHEEEDKLAPMLTSVDWAILMIVLPILEPFVKTQTQLEGDQYVTGSLVVPFIFDLHMVLNDAVDDLSELAASNDADITAVRTAVIDILTYREGSRR--KPRGLKPLQVLAIALDPRTKMRYGVEDEEKPKVWKFMQEAVVEIAV--KVREEKSPTGFS----PQAPAAXXXXXXXXXXXQVASARKXRRGGGFMEAFQVTGGLKMYEPGKVGEDENKCYVVYLDPLDWWRVKRKNVPYLASLARRVLTIP-TQAESKRLFFCAGNVVTKNRNGLCPKIVKLLVLLRH 1404
            ++   L G+H+ +T+DGWTS +NDTYM  T + I+S++ LV + VEC K  G TTGE + E VKA +A++GL  + +  TTDCEPSMVK GRLL+++    H+GC  HRLE+ +S  F G GVSKA+ALAR +V  Y+ SSQ ++ L Q +R  +  E+KKV+QDV  RWW T + + RLL LRR I +HE  D + P+L   DW +L +V P+ +PF+ +Q   E  + VT SLV+P+I DL   L++AV+ L   A   ++ +   +  V     +   +    +PRG K  QVLA ALDPR+K  YG+E+ E   VW+ +    V++A+  K  E+    G S    P  PAAXXXXXXXXXX              F  A  V        PG   +  N                       +S   RVL IP +Q +S+R+F  AG VVTK R  + P+ V+L++ LR+
Sbjct:   40 EVLGRLTGEHVAVTSDGWTSASNDTYMYFTCTYISSNFDLVALCVECKKHGGRTTGEDLVEAVKAMIARNGLTSRTVATTTDCEPSMVKAGRLLEENEGVTHLGCFCHRLESITSQAFGGPGVSKALALARRVVTRYNMSSQASDRLEQ-MRDIVQVERKKVVQDVETRWWSTYASICRLLSLRRPITEHERIDSIPPLLKEKDWEVLQVVEPLSKPFILSQKHREASKDVTVSLVIPYIADLRDELDEAVERLQAHACPAESIVAEAKKDVFFAPKHVRPTSVIVEPRGFKKKQVLATALDPRSKSLYGIEETEHSDVWEAVANEAVKVAIEAKATEDTQSAGASSSLIPVEPAAXXXXXXXXXXD-------------FAAASAV--------PGDKQQSANA----------------------SSSTSRVLCIPASQPQSERVFSSAGLVVTKTRARMDPENVELMLFLRN 470          
BLAST of mRNA_H-elongata_contig56778.13126.1 vs. uniprot
Match: A0A6H5KVI1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KVI1_9PHAE)

HSP 1 Score: 236 bits (601), Expect = 1.220e-69
Identity = 148/386 (38.34%), Postives = 207/386 (53.63%), Query Frame = 1
Query:   64 SCANDTYMSVTISLITSSWKLVVISVECSKSAGTTTGEVVAEGVKAAVAKHGLEGKVIVITTDCEPSMVKMGRLLKDSNACVHVGCTNHRLENTSSIVFNGSGVSKAMALARGLVKHYSTSSQMANCLAQFVRIYLGSEKKKVIQDVAIRWWPTCSMVRRLLELRRAIIKHEEEDKLAPMLTSVDWAILMIVLPILEPFVKTQTQLEGDQYVTGSLVVPFIFDLHMVLNDAVDDLSELAASNDADITAVRTAVI------------------DILTYREGSRRKPRGLKPLQVLAIALDPRTKMRYGVEDEEKPKVWKFMQEAVVEIAV--KVREEKSPTGFS----PQAPAAXXXXXXXXXXXQVASARKXRRGGGFMEAFQVTG 1149
            S +NDTYM+ T + I+S++ LV + +E  K  G TTGE + E VKA +A++GL G+ +  TTDCEP MVK GRLL+++    H+GC  HR E+ +S  F G GVSKA+AL RG+V  Y+ SSQ +N L Q   I +  E+KKV+QDV  RWW T                  E D + P+L   DW +L +V P+L PF+  Q  LE  + VT SLV  +I DL   L++A++ L   +   ++ +   +  ++                  D+L Y EG RR+PRG K  QVLA ALDPR+K  YG+E+ E   VW+ +    V++A+  K  E+    G S    P  PAA             A+A + RR  GF  A    G
Sbjct:    3 SASNDTYMTFTCTYISSNFDLVALCLEYKKHGGRTTGEDLVEAVKAMIARNGLTGRTVATTTDCEPFMVKAGRLLEENEGVSHLGCFCHRFESITSQAFGGPGVSKALALPRGVVTRYTMSSQASNRLEQMCDI-VQVERKKVVQDVETRWWST----------------PREIDSIPPLLNEKDWEVLQLVEPLLHPFMTAQKHLEASKGVTVSLVTAYIADLRDELDEAIERLQAYSCPAESIVAEAKKDILRCAPALQTDLSRRWRDGTDVLVYTEGPRRQPRGFKKKQVLATALDPRSKSLYGIEETEHSDVWEAVANEAVKVAIEAKATEDTQSAGASSSPIPVEPAA-------------AAAYQPRRRRGFATASAAHG 358          
BLAST of mRNA_H-elongata_contig56778.13126.1 vs. uniprot
Match: A0A6H5JWI1_9PHAE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JWI1_9PHAE)

HSP 1 Score: 174 bits (440), Expect = 5.800e-47
Identity = 118/235 (50.21%), Postives = 143/235 (60.85%), Query Frame = 1
Query:  826 DILTYREGSRRKPRGLKPLQVLAIALDPRTKMRYGVEDEEKPKVWKFMQEAVVEIAVKVRE-EKSPTGFSPQAPAAXXXXXXXXXXXQ----------------------VASARKXRRGGGF---------------MEAFQVTGGLKMYEPGKVGEDENKCYVVYLDPLDWWRVKRKNVPYLASLARRVLTIP-TQAESKRLFFCAGNVVTKNRNGLCPKIVKLLVLLRHSWE 1413
            +IL Y+EG RR+P G KP+QVLA ALDPRTK+ YGV+++EK  VWK ++E  V+IAV+ R  E S    S Q P  XXXXXXXXXXX                       V  AR  +   G                + AF+V+ G+KMYE  K G        VYLDPLDWWRV+  + P+LA+LARRVL IP TQAES+RLF CAGN+VTKNRN L P  V+LLVLLRHSW+
Sbjct:   60 NILIYKEGRRRQPGGFKPVQVLATALDPRTKILYGVDEDEKADVWKLVEEEAVKIAVETRNSENSQRASSQQGPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAQAVGGARTPQLDEGADSSFVRLITSSVRVELTAFKVSTGIKMYEEDKEGAK------VYLDPLDWWRVRCADFPHLANLARRVLAIPATQAESERLFSCAGNIVTKNRNNLAPTTVELLVLLRHSWK 288          
BLAST of mRNA_H-elongata_contig56778.13126.1 vs. uniprot
Match: UPI001955D638 (E3 SUMO-protein ligase ZBED1-like isoform X1 n=3 Tax=Pimephales promelas TaxID=90988 RepID=UPI001955D638)

HSP 1 Score: 128 bits (321), Expect = 1.630e-28
Identity = 134/477 (28.09%), Postives = 212/477 (44.44%), Query Frame = 1
Query:   34 HICITTDGWTSCANDTYMSVTISLITSSWKLVVISVECSKSAGTTTGEVVAEGVKAAVAKHGL-EGKVIVITTDCEPSMVKMGRLLKDSNACVHVGCTNHRLENTSSIVFNGSGVSKAMALARGLVKHYSTSSQMANCLAQFVRIYLGSEKKKVIQDVAIRWWPTCSMVRRLLELRRAIIKHEEEDK----LAPMLTSVDWAILMIVLPILEPFVKTQTQLEGDQYVTGSLVVPFIFDLHMVLNDAVDDLSELAASNDADITA-VRTAVIDILT--YREGSRRKPRGLKPLQVLAIALDPRTKMRYGVEDEEKPKVWKFMQEAVV-EIAVKVREEKSPTGFSPQAPAAXXXXXXXXXXXQVASARKXRRGGGFMEAFQVTGGLKMYEPGKVG-EDENKCYVVY------LDPLDWWRVKRKNVPYLASLARRVLTIPTQAE-SKRLFFCAGNVVTKNRNGLCPKIVKLLVLLRHSWE 1413
            H   TTD WTS  ++ Y+S+T   I  +W+L    ++ S      TG+++A+G+K A+A   L E +++ +TTD   ++V   R+    N    + C  HRL            + +A+ + + +V  +S+S +    LA   +  L   + K+I +   RW     M+ R LE  +AI      DK    L P  T  D  +L  V   L P ++    L G+Q VT S + P +     + N  V  +     S+D ++T  ++  +++ L   Y E        ++ L  LA  LDPR K RY  +   K      ++ AV  E+   V EE SPT     A  A           + A   K   G  F +  +  G     E   +  E E + Y++       ++PLDWW+ +  N P L  LA++ L IP  +  S+R F   GN+VT +R  L P  V  LV L H+ +
Sbjct:   56 HFATTTDLWTSRTSEPYLSLTAHFIDETWQLQSYCLQTSYFPDDHTGDIIAQGLKDALASWSLPEDRMVCMTTDSGANVVSALRI----NNWQRLPCFGHRLHIAIERSMRDPRIDRAIGVCKKMVAAFSSSWKKKKALAD-AQEQLKLPQHKLITESPTRWGSRQRMIERFLEQEKAIRHVLTADKKHRHLVP--TWQDVEVLEAVSKALGPLLEFTDALSGEQLVTVSYLKPVL----SLFNTEVLAVK----SDDTELTKKIKQTILEYLNTKYSEDC------VEELLSLASTLDPRFKNRYNNDGRIKT-----IETAVTAELLAMVTEEDSPTPGPSTAAQATTVEPEAGDASEPAKKTKKSFGSYFKKPQEFRG-----ESLHIAIEKEIQSYLMIPEVDSDVNPLDWWKTQEINFPRLGKLAKKYLCIPASSSPSERAFSTGGNIVTCHRAALKPDAVDRLVFLSHNLK 501          
BLAST of mRNA_H-elongata_contig56778.13126.1 vs. uniprot
Match: A0A6P6NAP0_CARAU (zinc finger BED domain-containing protein 1-like n=7 Tax=Clupeocephala TaxID=186625 RepID=A0A6P6NAP0_CARAU)

HSP 1 Score: 126 bits (316), Expect = 2.130e-27
Identity = 132/464 (28.45%), Postives = 210/464 (45.26%), Query Frame = 1
Query:   46 TTDGWTSCANDTYMSVTISLITSSWKLVVISVECSKSAGTTTGEVVAEGVKAAVAKHGL-EGKVIVITTDCEPSMVKMGRLLKDSNACVHVGCTNHRLENTSSIVFNGSGVSKAMALARGLVKHYSTSSQMANCLAQFVRIYLGSEKKKVIQDVAIRWWPTCSMVRRLLELRRAIIKHEEEDKLAPML--TSVDWAILMIVLPILEPFVKTQTQLEGDQYVTGSLVVPFIFDLHMVLNDAVDDLSELAASNDADIT-AVRTAVIDILTYREGSRRKPRGLKPLQVLAIALDPRTKMRYGVEDEEKPKVWKFMQEAVVEIAVKV--REEKSPTGFSPQAPAAXXXXXXXXXXXQVASARKXRRGGGFMEAFQVTGGLKMYEPGKVGEDENKCYVVYL------DPLDWWRVKRKNVPYLASLARRVLTIP-TQAESKRLFFCAGNVVTKNRNGLCPKIVKLLVLL 1398
            T D W+S   + Y S+T+  I   + L    ++ +      TGE +A G++  +A   L E   + ITTD   +MV   RL    N    + C  HRL            VS+A AL R LV H+S S +    L +  R  L   +  +I +   RW     M+ R+LE  +AI +    D+ A  L  T  D  +L  +   L P ++    L G++YV+ S + P    LH+     + + +E     D D+T +++T V+  L  + G       ++ L  +A  LDPR K++Y +  +  P +   ++  +V++A +   RE++S T       +A           Q    +  R  G F +    +  L + +   V E E   Y++        DPL WWRV + + P L  +AR+ L +P T A S+RLF   GN+VT  R+ L P  V +LV L
Sbjct:  229 TADMWSSRTAEPYQSLTVHFIDEDFNLRARCLQTTYFPDDHTGENIAAGLREGLASWDLHEENHVCITTDNASNMVLAARL----NEWTRLQCFGHRLHLAIENALKDDRVSRATALCRKLVGHFSHSWKKKAALMEAQR-ELKLPEHNLITECPTRWGSKEMMIARVLEQAKAISQVLSGDRYARSLIPTWQDIDVLESIHKALHPLLEFTDALSGEEYVSISYLKPV---LHLFATSVLSEDAE-----DTDLTKSIKTKVLAYLNNKYGDPN----IQELLDVACFLDPRFKIQY-ISTDNIPAIKTRLKTEMVDLAQRTYHREKRSRTETVQMPQSA-----------QPLGEKAKRSLGSFFKTSAASPSLPVED---VAEAELNNYLMTPTIDGEDDPLAWWRVHKISYPQLCIMARKYLCVPATSAPSERLFSTGGNIVTCTRSSLKPAKVNILVFL 660          
BLAST of mRNA_H-elongata_contig56778.13126.1 vs. uniprot
Match: UPI001E1DF359 (E3 SUMO-protein ligase ZBED1-like n=1 Tax=Mercenaria mercenaria TaxID=6596 RepID=UPI001E1DF359)

HSP 1 Score: 124 bits (310), Expect = 5.390e-27
Identity = 128/506 (25.30%), Postives = 214/506 (42.29%), Query Frame = 1
Query:   37 ICITTDGWTSCANDTYMSVTISLITSSWKLVVISVECSKSAGTTTGEVVAEGVKAAVAKH----GLEGKVIVITTDCEPSMVKMGRLLKDSNACVHVGCTNHRLENTSSIVFNGSGVSKAMALARGLVKHYSTSSQMANCLAQFVRIYLGSEKKKVIQDVAIRWWPTCSMVRRLLELRRAIIKH-------EEEDKLAPMLTSVDWAILMIVLPILEPFVKTQTQLEGDQYVTGSLVVPFIFDL-HMVLNDAVDDLSELAASND---ADITAVRTAVIDILTYREGSRRKPRGLKPLQVLAIALDPRTKMRYGVEDEEKPKVWKFMQE------AVVEIAVKVREEKS-PTGFS---------PQAPAAXXXXXXXXXXXQVASARKXRR--------------GGGFMEAFQVTGGLKMYEPGKVGEDENKCYVVYLD-PLDWWRVKRKNVPYLASLARRVLTIP-TQAESKRLFFCAGNVVTKNRNGLCPKIVKLLVLLRHSWE 1413
            + ITTDGWTS A ++Y+++T++ I   WKLV   ++      + T E +AE ++ AV +     GL G V  + +D   +M+K G++L      +H+GC  H L            VS+ +A  R +V  +  S      L    ++ LG    K+  DV  RW     M+ R LEL+ A++           +DK    ++  +  +   V  +L+P  +  T L  +   T S+++P  F L + +L    DDL  +        AD+T       ++L                  +  A+DPR K    + D+++  V+  + E      AVV   VKV+ +KS P   +         P  P               A A K                 G  F+   +     +     +V + +++  V   D PL WW+ +    P+L+ LA+ +L IP T   S+R+F  AG+++T  R  L  K V  L+ L+ +W+
Sbjct:   30 VAITTDGWTSRATESYVTITVTFINVDWKLVNFVLQTRPLPESHTAENIAEVIEYAVKEWKLPTGLGGTVPPVISDNAANMIKAGKVL---GCTIHIGCLAHTLNLAVQKALKVKSVSQLLARVRSIVSFFHRSCVATAVLKSKAQL-LGLPNHKLKTDVCTRWNSAFEMLNRFLELQAAVVATLTSKEMMHMKDKTLHSISDQNLTLAQEVSVMLKPVKEITTMLCTESLPTVSVIMPLHFKLTNKILQPNEDDLHAIVEMKQIMRADLTQRYLDKTELLN-----------------MTSAIDPRFKQLPYLSDDDRFAVYNHLTEEAIRVSAVVPAVVKVKTKKSEPVTMTKATVSQPPLPSLPTDMLEDQSDEIVCDTAPAIKQESQIVATPKSVLNDILGEVFIARVEAPKSSQELAQMEVIQYKSEPPVSLNDNPLQWWKQRELRFPFLSKLAKCLLCIPATSVPSERVFSTAGDILTAQRASLKAKHVDKLIFLKKNWK 514          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig56778.13126.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LCS5_ECTSI1.350e-9839.42Dimer_Tnp_hAT domain-containing protein n=2 Tax=Ec... [more]
A0A6H5L7Y8_9PHAE2.440e-9046.58Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KUY5_9PHAE1.060e-8838.11Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JHP9_9PHAE1.970e-8738.48Autophagy protein 5 n=1 Tax=Ectocarpus sp. CCAP 13... [more]
A0A6H5JJV8_9PHAE2.930e-8640.21Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ec... [more]
A0A6H5KVI1_9PHAE1.220e-6938.34Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JWI1_9PHAE5.800e-4750.21Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ec... [more]
UPI001955D6381.630e-2828.09E3 SUMO-protein ligase ZBED1-like isoform X1 n=3 T... [more]
A0A6P6NAP0_CARAU2.130e-2728.45zinc finger BED domain-containing protein 1-like n... [more]
UPI001E1DF3595.390e-2725.30E3 SUMO-protein ligase ZBED1-like n=1 Tax=Mercenar... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig56778contigH-elongata_contig56778:1668..3233 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score325.1
Seed ortholog evalue5.4e-86
Seed eggNOG ortholog2880.D7G5Z0
EggNOG free text desc.protein dimerization activity
EggNOG OGsKOG1121@1,KOG1121@2759
COG Functional cat.E
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons3
Model size1413
Cds size1413
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig56778.13126.1prot_H-elongata_contig56778.13126.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig56778 1668..3233 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930922.6558547-CDS-H-elongata_contig56778:1667..24911622930922.6558547-CDS-H-elongata_contig56778:1667..2491Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig56778 1668..2491 +
1691679626.1420798-CDS-H-elongata_contig56778:1667..24911691679626.1420798-CDS-H-elongata_contig56778:1667..2491Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig56778 1668..2491 +
1622930922.6790798-CDS-H-elongata_contig56778:2545..28521622930922.6790798-CDS-H-elongata_contig56778:2545..2852Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig56778 2546..2852 +
1691679626.164176-CDS-H-elongata_contig56778:2545..28521691679626.164176-CDS-H-elongata_contig56778:2545..2852Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig56778 2546..2852 +
1622930922.6980903-CDS-H-elongata_contig56778:2951..32331622930922.6980903-CDS-H-elongata_contig56778:2951..3233Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig56778 2952..3233 +
1691679626.17584-CDS-H-elongata_contig56778:2951..32331691679626.17584-CDS-H-elongata_contig56778:2951..3233Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig56778 2952..3233 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig56778.13126.1

>prot_H-elongata_contig56778.13126.1 ID=prot_H-elongata_contig56778.13126.1|Name=mRNA_H-elongata_contig56778.13126.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=471bp
MTKIFNLLKGKHICITTDGWTSCANDTYMSVTISLITSSWKLVVISVECS
KSAGTTTGEVVAEGVKAAVAKHGLEGKVIVITTDCEPSMVKMGRLLKDSN
ACVHVGCTNHRLENTSSIVFNGSGVSKAMALARGLVKHYSTSSQMANCLA
QFVRIYLGSEKKKVIQDVAIRWWPTCSMVRRLLELRRAIIKHEEEDKLAP
MLTSVDWAILMIVLPILEPFVKTQTQLEGDQYVTGSLVVPFIFDLHMVLN
DAVDDLSELAASNDADITAVRTAVIDILTYREGSRRKPRGLKPLQVLAIA
LDPRTKMRYGVEDEEKPKVWKFMQEAVVEIAVKVREEKSPTGFSPQAPAA
AAAAGGGPGVGQVASARKRRRGGGFMEAFQVTGGLKMYEPGKVGEDENKC
YVVYLDPLDWWRVKRKNVPYLASLARRVLTIPTQAESKRLFFCAGNVVTK
NRNGLCPKIVKLLVLLRHSWE
back to top

mRNA from alignment at H-elongata_contig56778:1668..3233+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig56778.13126.1 ID=mRNA_H-elongata_contig56778.13126.1|Name=mRNA_H-elongata_contig56778.13126.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1566bp|location=Sequence derived from alignment at H-elongata_contig56778:1668..3233+ (Himanthalia elongata Himel1 dioecious)
ATGACGAAGATCTTCAATTTGCTGAAGGGCAAGCACATTTGCATCACTAC GGACGGCTGGACCTCCTGCGCCAACGACACGTATATGTCGGTGACCATCA GCTTGATAACCAGTTCGTGGAAGCTCGTCGTCATCTCTGTGGAGTGCAGC AAGTCGGCGGGAACAACGACTGGGGAAGTTGTCGCTGAAGGGGTCAAAGC GGCGGTGGCGAAGCATGGGTTGGAAGGTAAGGTCATCGTGATTACCACTG ACTGCGAGCCTTCTATGGTCAAGATGGGGCGCCTTCTCAAAGACAGCAAC GCTTGCGTCCATGTCGGTTGCACTAATCATCGACTCGAAAACACCAGCTC TATCGTGTTCAACGGGTCGGGGGTGTCGAAGGCGATGGCCTTAGCCCGCG GTCTGGTGAAGCATTACTCGACGTCAAGTCAAATGGCCAACTGTCTCGCC CAGTTCGTCAGGATTTACCTCGGCTCCGAGAAAAAGAAGGTGATTCAAGA CGTGGCGATTAGGTGGTGGCCAACGTGCAGCATGGTCAGGCGACTGCTAG AGCTGAGGCGGGCAATCATCAAGCATGAGGAGGAGGACAAGCTAGCGCCG ATGCTAACGTCAGTAGACTGGGCTATCCTCATGATTGTCCTTCCTATCTT AGAGCCGTTCGTGAAAACGCAAACTCAGCTAGAGGGTGACCAATACGTGA CGGGTAGCTTGGTCGTGCCATTTATTTTCGACCTCCACATGGTCCTTAAC GACGCGGTGGACGACCTTTCGGAACTGGCTGCAAGCAACGACGCCGATAT TACCGCAGTAAGAACGGCGGTGATGTCGTGCTTCGAGGCGCTTCAGAAGG ATTTCGTCAATCGTTGGGGAGACGGGAGCGACATCCTCACCTACAGGGAA GGCAGCAGGAGGAAACCCCGCGGCTTGAAGCCGCTGCAGGTGCTGGCAAT CGCTCTCGATCCACGTACTAAGATGCGGTACGGGGTCGAAGATGAGGAGA AGCCGAAGGTGTGGAAGTTTATGCAGGAGGCGGTGGTGGAGATCGCGGTG AAAGTCCGTGAAGAGAAGAGCCCCACGGGATTCTCTCCGCAAGCACCGGC GGCAGCCGCCGCCGCTGGGGGCGGTCCGGGTGTTGGTCAGGTTGCGTCTG CGAGGAAGCGCCGGCGTGGCGGCGGTTTCATGGAGGTTGCACAGGCGATG GGAAGTGCAACACACCAGGGTGCTGGAGGCACCGATACATCGACCAACAG CCTCATAACCAACTCGGTGCGGCTGAAGGTAGAGGCCTTCCAGGTGACCG GAGGGTTGAAGATGTACGAGCCGGGAAAAGTTGGCGAGGACGAAAACAAG TGTTATGTGGTGTACCTTGACCCGTTGGACTGGTGGCGGGTGAAGCGCAA AAACGTCCCGTACTTGGCCAGCCTCGCGCGCCGTGTCCTTACCATCCCCA CGCAGGCGGAATCGAAGCGCCTGTTCTTCTGCGCCGGCAACGTCGTGACG AAGAACCGGAATGGGTTGTGTCCCAAGATAGTCAAGCTGCTTGTCCTCCT GCGCCATTCGTGGGAG
back to top

Coding sequence (CDS) from alignment at H-elongata_contig56778:1668..3233+

>mRNA_H-elongata_contig56778.13126.1 ID=mRNA_H-elongata_contig56778.13126.1|Name=mRNA_H-elongata_contig56778.13126.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=2826bp|location=Sequence derived from alignment at H-elongata_contig56778:1668..3233+ (Himanthalia elongata Himel1 dioecious)
ATGACGAAGATCTTCAATTTGCTGAAGGGCAAGCACATTTGCATCACTAC
GGACGGCTGGACCTCCTGCGCCAACGACACGTATATGTCGGTGACCATCA
GCTTGATAACCAGTTCGTGGAAGCTCGTCGTCATCTCTGTGGAGTGCAGC
AAGTCGGCGGGAACAACGACTGGGGAAGTTGTCGCTGAAGGGGTCAAAGC
GGCGGTGGCGAAGCATGGGTTGGAAGGTAAGGTCATCGTGATTACCACTG
ACTGCGAGCCTTCTATGGTCAAGATGGGGCGCCTTCTCAAAGACAGCAAC
GCTTGCGTCCATGTCGGTTGCACTAATCATCGACTCGAAAACACCAGCTC
TATCGTGTTCAACGGGTCGGGGGTGTCGAAGGCGATGGCCTTAGCCCGCG
GTCTGGTGAAGCATTACTCGACGTCAAGTCAAATGGCCAACTGTCTCGCC
CAGTTCGTCAGGATTTACCTCGGCTCCGAGAAAAAGAAGGTGATTCAAGA
CGTGGCGATTAGGTGGTGGCCAACGTGCAGCATGGTCAGGCGACTGCTAG
AGCTGAGGCGGGCAATCATCAAGCATGAGGAGGAGGACAAGCTAGCGCCG
ATGCTAACGTCAGTAGACTGGGCTATCCTCATGATTGTCCTTCCTATCTT
AGAGCCGTTCGTGAAAACGCAAACTCAGCTAGAGGGTGACCAATACGTGA
CGGGTAGCTTGGTCGTGCCATTTATTTTCGACCTCCACATGGTCCTTAAC
GACGCGGTGGACGACCTTTCGGAACTGGCTGCAAGCAACGACGCCGATAT
TACCGCAGTAAGAACGGCGGTGATATGACGAAGATCTTCAATTTGCTGAA
GGGCAAGCACATTTGCATCACTACGGACGGCTGGACCTCCTGCGCCAACG
ACACGTATATGTCGGTGACCATCAGCTTGATAACCAGTTCGTGGAAGCTC
GTCGTCATCTCTGTGGAGTGCAGCAAGTCGGCGGGAACAACGACTGGGGA
AGTTGTCGCTGAAGGGGTCAAAGCGGCGGTGGCGAAGCATGGGTTGGAAG
GTAAGGTCATCGTGATTACCACTGACTGCGAGCCTTCTATGGTCAAGATG
GGGCGCCTTCTCAAAGACAGCAACGCTTGCGTCCATGTCGGTTGCACTAA
TCATCGACTCGAAAACACCAGCTCTATCGTGTTCAACGGGTCGGGGGTGT
CGAAGGCGATGGCCTTAGCCCGCGGTCTGGTGAAGCATTACTCGACGTCA
AGTCAAATGGCCAACTGTCTCGCCCAGTTCGTCAGGATTTACCTCGGCTC
CGAGAAAAAGAAGGTGATTCAAGACGTGGCGATTAGGTGGTGGCCAACGT
GCAGCATGGTCAGGCGACTGCTAGAGCTGAGGCGGGCAATCATCAAGCAT
GAGGAGGAGGACAAGCTAGCGCCGATGCTAACGTCAGTAGACTGGGCTAT
CCTCATGATTGTCCTTCCTATCTTAGAGCCGTTCGTGAAAACGCAAACTC
AGCTAGAGGGTGACCAATACGTGACGGGTAGCTTGGTCGTGCCATTTATT
TTCGACCTCCACATGGTCCTTAACGACGCGGTGGACGACCTTTCGGAACT
GGCTGCAAGCAACGACGCCGATATTACCGCAGTAAGAACGGCGGTGATCG
ACATCCTCACCTACAGGGAAGGCAGCAGGAGGAAACCCCGCGGCTTGAAG
CCGCTGCAGGTGCTGGCAATCGCTCTCGATCCACGTACTAAGATGCGGTA
CGGGGTCGAAGATGAGGAGAAGCCGAAGGTGTGGAAGTTTATGCAGGAGG
CGGTGGTGGAGATCGCGGTGAAAGTCCGTGAAGAGAAGAGCCCCACGGGA
TTCTCTCCGCAAGCACCGGCGGCAGCCGCCGCCGCTGGGGGCGGTCCGGG
TGTTGGTCAGGTTGCGTCTGCGAGGAAGCGCCGGCGTGGCGGCGGTTTCA
TGGAGCGACATCCTCACCTACAGGGAAGGCAGCAGGAGGAAACCCCGCGG
CTTGAAGCCGCTGCAGGTGCTGGCAATCGCTCTCGATCCACGTACTAAGA
TGCGGTACGGGGTCGAAGATGAGGAGAAGCCGAAGGTGTGGAAGTTTATG
CAGGAGGCGGTGGTGGAGATCGCGGTGAAAGTCCGTGAAGAGAAGAGCCC
CACGGGATTCTCTCCGCAAGCACCGGCGGCAGCCGCCGCCGCTGGGGGCG
GTCCGGGTGTTGGTCAGGTTGCGTCTGCGAGGAAGCGCCGGCGTGGCGGC
GGTTTCATGGAGGCCTTCCAGGTGACCGGAGGGTTGAAGATGTACGAGCC
GGGAAAAGTTGGCGAGGACGAAAACAAGTGTTATGTGGTGTACCTTGACC
CGTTGGACTGGTGGCGGGTGAAGCGCAAAAACGTCCCGTACTTGGCCAGC
CTCGCGCGCCGTGTCCTTACCATCCCCACGCAGGCGGAATCGAAGCGCCT
GTTCTTCTGCGCCGGCAACGTCGTGACGAAGAACCGGAATGGGTTGTGTC
CCAAGATAGTCAAGCTGCTTGTCCTCCTGCGCCATTCGTGGGAGGCCTTC
CAGGTGACCGGAGGGTTGAAGATGTACGAGCCGGGAAAAGTTGGCGAGGA
CGAAAACAAGTGTTATGTGGTGTACCTTGACCCGTTGGACTGGTGGCGGG
TGAAGCGCAAAAACGTCCCGTACTTGGCCAGCCTCGCGCGCCGTGTCCTT
ACCATCCCCACGCAGGCGGAATCGAAGCGCCTGTTCTTCTGCGCCGGCAA
CGTCGTGACGAAGAACCGGAATGGGTTGTGTCCCAAGATAGTCAAGCTGC
TTGTCCTCCTGCGCCATTCGTGGGAG
back to top