mRNA_H-elongata_contig56666.13114.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig56666.13114.1
Unique NamemRNA_H-elongata_contig56666.13114.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig56666.13114.1 vs. uniprot
Match: D8LKN5_ECTSI (ADP/ATP translocase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LKN5_ECTSI)

HSP 1 Score: 256 bits (655), Expect = 5.280e-86
Identity = 123/137 (89.78%), Postives = 129/137 (94.16%), Query Frame = 1 
Query:   16 KQKSNFLVDFALGGVSGAIAKTCTAPIERVKLIIQTQDANPRIKSGEIPRYTGIGNCFTRVYQEQGLSAFWRGNMTNIIRYFPTQAFNFAFKDSIKALFPKANPKTEFWSFFAINMASGGLAGAGSLCFVYPLDYAR 426
            K +SNFLVDFALGGVSGA+AKTCTAPIERVKLIIQTQDANP+IKSGEI RY GIG+CF+RVY EQGL AFWRGNMTNIIRYFPTQAFNFAFKD+IK LFPKANPKTEF  FFAINMASGGLAGAGSLCFVYPLDYAR
Sbjct:    4 KAQSNFLVDFALGGVSGAVAKTCTAPIERVKLIIQTQDANPKIKSGEIARYNGIGDCFSRVYSEQGLKAFWRGNMTNIIRYFPTQAFNFAFKDTIKGLFPKANPKTEFGKFFAINMASGGLAGAGSLCFVYPLDYAR 140
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BLAST of mRNA_H-elongata_contig56666.13114.1 vs. uniprot
Match: A0A6H5JHM3_9PHAE (ADP/ATP translocase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHM3_9PHAE)

HSP 1 Score: 255 bits (651), Expect = 3.720e-83
Identity = 122/137 (89.05%), Postives = 128/137 (93.43%), Query Frame = 1 
Query:   16 KQKSNFLVDFALGGVSGAIAKTCTAPIERVKLIIQTQDANPRIKSGEIPRYTGIGNCFTRVYQEQGLSAFWRGNMTNIIRYFPTQAFNFAFKDSIKALFPKANPKTEFWSFFAINMASGGLAGAGSLCFVYPLDYAR 426
            K +SNFLVDFALGGVSGA+AKTCTAPIERVKLIIQTQDANP+IKSGEI RY GIG+CF+RVY EQGL AFWRGNMTNIIRYFPTQAFNFAFKD+IK LFPKANPKTEF  FF INMASGGLAGAGSLCFVYPLDYAR
Sbjct:    4 KAQSNFLVDFALGGVSGAVAKTCTAPIERVKLIIQTQDANPKIKSGEIARYNGIGDCFSRVYSEQGLKAFWRGNMTNIIRYFPTQAFNFAFKDTIKGLFPKANPKTEFGKFFVINMASGGLAGAGSLCFVYPLDYAR 140
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BLAST of mRNA_H-elongata_contig56666.13114.1 vs. uniprot
Match: A0A836CBW4_9STRA (ADP/ATP translocase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CBW4_9STRA)

HSP 1 Score: 254 bits (650), Expect = 5.630e-83
Identity = 120/137 (87.59%), Postives = 128/137 (93.43%), Query Frame = 1 
Query:   16 KQKSNFLVDFALGGVSGAIAKTCTAPIERVKLIIQTQDANPRIKSGEIPRYTGIGNCFTRVYQEQGLSAFWRGNMTNIIRYFPTQAFNFAFKDSIKALFPKANPKTEFWSFFAINMASGGLAGAGSLCFVYPLDYAR 426
            K++SNFL DFALGGVSGA+AKTCTAPIERVKL+IQTQDANPRI+SGEIPRYTGIGNCFTRVYQEQG SAFWRGN TN+IRYFPTQAFNFAFKD+IKA+FPK NPKTEF  FF INMASGGLAGAGSL  VYPLDYAR
Sbjct:    6 KKQSNFLADFALGGVSGAVAKTCTAPIERVKLLIQTQDANPRIRSGEIPRYTGIGNCFTRVYQEQGFSAFWRGNFTNVIRYFPTQAFNFAFKDTIKAMFPKTNPKTEFGKFFLINMASGGLAGAGSLAIVYPLDYAR 142
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BLAST of mRNA_H-elongata_contig56666.13114.1 vs. uniprot
Match: D7FR66_ECTSI (ADP/ATP translocase n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FR66_ECTSI)

HSP 1 Score: 248 bits (632), Expect = 2.840e-80
Identity = 118/137 (86.13%), Postives = 129/137 (94.16%), Query Frame = 1 
Query:   16 KQKSNFLVDFALGGVSGAIAKTCTAPIERVKLIIQTQDANPRIKSGEIPRYTGIGNCFTRVYQEQGLSAFWRGNMTNIIRYFPTQAFNFAFKDSIKALFPKANPKTEFWSFFAINMASGGLAGAGSLCFVYPLDYAR 426
            K++SNFLVDFALGGVSGAIAKTCTAPIERVKLI+QTQDANPRIKSGE+ RYTGI NCFTRV+QEQGL+AFWRGN TN+IRYFPTQAFNFAFKD IKALFPK +PK +F  FFAIN+ASGGLAGAGSLCFVYPLD+AR
Sbjct:    4 KKESNFLVDFALGGVSGAIAKTCTAPIERVKLIMQTQDANPRIKSGEVARYTGIVNCFTRVHQEQGLAAFWRGNTTNVIRYFPTQAFNFAFKDQIKALFPKVSPKDDFAKFFAINIASGGLAGAGSLCFVYPLDFAR 140
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BLAST of mRNA_H-elongata_contig56666.13114.1 vs. uniprot
Match: A0A7S4SW75_9STRA (ADP/ATP translocase (Fragment) n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S4SW75_9STRA)

HSP 1 Score: 239 bits (611), Expect = 6.870e-79
Identity = 114/136 (83.82%), Postives = 122/136 (89.71%), Query Frame = 1 
Query:   19 QKSNFLVDFALGGVSGAIAKTCTAPIERVKLIIQTQDANPRIKSGEIPRYTGIGNCFTRVYQEQGLSAFWRGNMTNIIRYFPTQAFNFAFKDSIKALFPKANPKTEFWSFFAINMASGGLAGAGSLCFVYPLDYAR 426
            ++SNFLVDFA GG+SGAIAKTCTAPIERVKLIIQTQDANPRI SGE+PRYTGIGNCF RVYQEQGL AFW GN  NIIRYFPTQAFNFAFKD+IK LFPK N K +F  FFA+N+ASGGLAGAGSLC VYPLDYAR
Sbjct:    8 KESNFLVDFAAGGISGAIAKTCTAPIERVKLIIQTQDANPRIMSGEVPRYTGIGNCFARVYQEQGLRAFWAGNGVNIIRYFPTQAFNFAFKDTIKGLFPKYNAKDDFGKFFAVNVASGGLAGAGSLCIVYPLDYAR 143
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BLAST of mRNA_H-elongata_contig56666.13114.1 vs. uniprot
Match: A0A061QXY6_9CHLO (ADP/ATP translocase n=1 Tax=Tetraselmis sp. GSL018 TaxID=582737 RepID=A0A061QXY6_9CHLO)

HSP 1 Score: 243 bits (620), Expect = 3.260e-78
Identity = 118/132 (89.39%), Postives = 120/132 (90.91%), Query Frame = 1 
Query:   31 FLVDFALGGVSGAIAKTCTAPIERVKLIIQTQDANPRIKSGEIPRYTGIGNCFTRVYQEQGLSAFWRGNMTNIIRYFPTQAFNFAFKDSIKALFPKANPKTEFWSFFAINMASGGLAGAGSLCFVYPLDYAR 426
            FL DF LGGVSGAIAKTCTAPIERVKLIIQTQDANPRI SGE+PRYTGIGNCF RVY EQGLSAFWRGN TN IRYFPTQAFNFAFKDSIK LFPKA+PK EF  FFAINMASGGLAGAGSLC VYPLDYAR
Sbjct:   14 FLKDFTLGGVSGAIAKTCTAPIERVKLIIQTQDANPRIISGEVPRYTGIGNCFVRVYSEQGLSAFWRGNFTNCIRYFPTQAFNFAFKDSIKKLFPKADPKEEFVKFFAINMASGGLAGAGSLCLVYPLDYAR 145
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BLAST of mRNA_H-elongata_contig56666.13114.1 vs. uniprot
Match: A0A7S2X5R8_PROMC (ADP/ATP translocase n=2 Tax=Dinophyceae TaxID=2864 RepID=A0A7S2X5R8_PROMC)

HSP 1 Score: 239 bits (611), Expect = 3.830e-77
Identity = 114/136 (83.82%), Postives = 122/136 (89.71%), Query Frame = 1 
Query:   19 QKSNFLVDFALGGVSGAIAKTCTAPIERVKLIIQTQDANPRIKSGEIPRYTGIGNCFTRVYQEQGLSAFWRGNMTNIIRYFPTQAFNFAFKDSIKALFPKANPKTEFWSFFAINMASGGLAGAGSLCFVYPLDYAR 426
            ++SNFLVDFA GG+SGAIAKTCTAPIERVKLIIQTQDANPRI SGE+PRYTGIGNCF RVYQEQGL AFW GN  NIIRYFPTQAFNFAFKD+IK LFPK N K +F  FFA+N+ASGGLAGAGSLC VYPLDYAR
Sbjct:    3 KESNFLVDFAAGGISGAIAKTCTAPIERVKLIIQTQDANPRIMSGEVPRYTGIGNCFARVYQEQGLRAFWAGNGVNIIRYFPTQAFNFAFKDTIKGLFPKYNAKDDFGKFFAVNVASGGLAGAGSLCIVYPLDYAR 138
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BLAST of mRNA_H-elongata_contig56666.13114.1 vs. uniprot
Match: A0A7R9U8P2_9STRA (ADP/ATP translocase n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9U8P2_9STRA)

HSP 1 Score: 239 bits (609), Expect = 8.720e-77
Identity = 112/139 (80.58%), Postives = 126/139 (90.65%), Query Frame = 1 
Query:   10 DGKQKSNFLVDFALGGVSGAIAKTCTAPIERVKLIIQTQDANPRIKSGEIPRYTGIGNCFTRVYQEQGLSAFWRGNMTNIIRYFPTQAFNFAFKDSIKALFPKANPKTEFWSFFAINMASGGLAGAGSLCFVYPLDYAR 426
            +GK+KSNFLVDFA GG +GAIAKT TAPIERVKLIIQTQDANP+I SGE+PRYTGI +CF RVY+EQGL+AFWRGN+TN++RYFPTQAFNFAFKDSIK +FPK NPK +F  FF  N+ASGGLAGAGSLCFVYPLDYAR
Sbjct:    3 EGKKKSNFLVDFAAGGTAGAIAKTATAPIERVKLIIQTQDANPKIISGEVPRYTGIMDCFVRVYREQGLAAFWRGNLTNVLRYFPTQAFNFAFKDSIKRMFPKYNPKEQFGMFFLTNLASGGLAGAGSLCFVYPLDYAR 141
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BLAST of mRNA_H-elongata_contig56666.13114.1 vs. uniprot
Match: A0A7R9YM42_DIALT (ADP/ATP translocase n=2 Tax=Diacronema lutheri TaxID=2081491 RepID=A0A7R9YM42_DIALT)

HSP 1 Score: 239 bits (611), Expect = 1.690e-76
Identity = 110/132 (83.33%), Postives = 123/132 (93.18%), Query Frame = 1 
Query:   31 FLVDFALGGVSGAIAKTCTAPIERVKLIIQTQDANPRIKSGEIPRYTGIGNCFTRVYQEQGLSAFWRGNMTNIIRYFPTQAFNFAFKDSIKALFPKANPKTEFWSFFAINMASGGLAGAGSLCFVYPLDYAR 426
            F+ DF +GGVSGA+AKTCTAPIERVKL+IQTQDANP+I SGE+ RYTGI +CF RVY+EQG+ AFWRGN+TN+IRYFPTQAFNFAFKD IKALFPKANPKTEFW++FAINMASGGLAGAGSLC VYPLDYAR
Sbjct:   54 FITDFLIGGVSGAVAKTCTAPIERVKLLIQTQDANPKIISGEVKRYTGITDCFVRVYREQGMGAFWRGNVTNVIRYFPTQAFNFAFKDLIKALFPKANPKTEFWTYFAINMASGGLAGAGSLCVVYPLDYAR 185
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BLAST of mRNA_H-elongata_contig56666.13114.1 vs. uniprot
Match: A8E615_XENLA (ADP/ATP translocase n=1 Tax=Xenopus laevis TaxID=8355 RepID=A8E615_XENLA)

HSP 1 Score: 238 bits (607), Expect = 1.810e-76
Identity = 113/132 (85.61%), Postives = 119/132 (90.15%), Query Frame = 1 
Query:   31 FLVDFALGGVSGAIAKTCTAPIERVKLIIQTQDANPRIKSGEIPRYTGIGNCFTRVYQEQGLSAFWRGNMTNIIRYFPTQAFNFAFKDSIKALFPKANPKTEFWSFFAINMASGGLAGAGSLCFVYPLDYAR 426
            F+ DF LGGVSGAIAKT TAPIERVKLIIQTQD+NPRI SGE+PRYTGIGNCFTRVYQEQG +AFWRGN TNIIRYFPTQAFNFAFKD+IK LFPK NPK EF  FF +NMASGGLAGAGSLC VYPLDYAR
Sbjct:   10 FVTDFLLGGVSGAIAKTATAPIERVKLIIQTQDSNPRIISGEVPRYTGIGNCFTRVYQEQGFAAFWRGNFTNIIRYFPTQAFNFAFKDTIKKLFPKVNPKEEFGKFFLVNMASGGLAGAGSLCIVYPLDYAR 141
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig56666.13114.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LKN5_ECTSI5.280e-8689.78ADP/ATP translocase n=1 Tax=Ectocarpus siliculosus... [more]
A0A6H5JHM3_9PHAE3.720e-8389.05ADP/ATP translocase n=1 Tax=Ectocarpus sp. CCAP 13... [more]
A0A836CBW4_9STRA5.630e-8387.59ADP/ATP translocase n=1 Tax=Tribonema minus TaxID=... [more]
D7FR66_ECTSI2.840e-8086.13ADP/ATP translocase n=2 Tax=Ectocarpus TaxID=2879 ... [more]
A0A7S4SW75_9STRA6.870e-7983.82ADP/ATP translocase (Fragment) n=1 Tax=Ditylum bri... [more]
A0A061QXY6_9CHLO3.260e-7889.39ADP/ATP translocase n=1 Tax=Tetraselmis sp. GSL018... [more]
A0A7S2X5R8_PROMC3.830e-7783.82ADP/ATP translocase n=2 Tax=Dinophyceae TaxID=2864... [more]
A0A7R9U8P2_9STRA8.720e-7780.58ADP/ATP translocase n=1 Tax=Pinguiococcus pyrenoid... [more]
A0A7R9YM42_DIALT1.690e-7683.33ADP/ATP translocase n=2 Tax=Diacronema lutheri Tax... [more]
A8E615_XENLA1.810e-7685.61ADP/ATP translocase n=1 Tax=Xenopus laevis TaxID=8... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig56666contigH-elongata_contig56666:1503..1931 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score247.3
Seed ortholog evalue4.4e-63
Seed eggNOG ortholog2880.D7FR66
KEGG koko:K05863
KEGG TC2.A.29.1
KEGG Pathwayko04020,ko04022,ko04217,ko04218,ko05012,ko05016,ko05166,map04020,map04022,map04217,map04218,map05012,map05016,map05166
GOsGO:0000295,GO:0003674,GO:0005215,GO:0005346,GO:0005347,GO:0005471,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005740,GO:0005743,GO:0006810,GO:0006811,GO:0006820,GO:0006839,GO:0006855,GO:0006862,GO:0006996,GO:0007005,GO:0007006,GO:0008150,GO:0008509,GO:0008514,GO:0009987,GO:0015075,GO:0015215,GO:0015216,GO:0015217,GO:0015238,GO:0015291,GO:0015297,GO:0015301,GO:0015605,GO:0015711,GO:0015748,GO:0015865,GO:0015866,GO:0015867,GO:0015868,GO:0015893,GO:0015931,GO:0015932,GO:0016020,GO:0016021,GO:0016043,GO:0019866,GO:0022804,GO:0022857,GO:0031090,GO:0031224,GO:0031300,GO:0031301,GO:0031966,GO:0031967,GO:0031975,GO:0032592,GO:0034220,GO:0042221,GO:0042493,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044422,GO:0044424,GO:0044425,GO:0044429,GO:0044444,GO:0044446,GO:0044455,GO:0044464,GO:0046902,GO:0050896,GO:0051179,GO:0051234,GO:0051503,GO:0055085,GO:0061024,GO:0065007,GO:0065008,GO:0071702,GO:0071705,GO:0071840,GO:0090559,GO:0098573,GO:0098656,GO:0099516,GO:1901264,GO:1901505,GO:1901679
EggNOG free text desc.ATP:ADP antiporter activity
EggNOG OGsKOG0749@1,KOG0749@2759
COG Functional cat.U
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko02000,ko03029
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionmitochondrial ADP/ATP translocator
Ec32 orthologEc-03_000980.1
Exons1
Model size429
Cds size429
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930921.4451394-CDS-H-elongata_contig56666:1502..19311622930921.4451394-CDS-H-elongata_contig56666:1502..1931Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig56666 1503..1931 -
1691679625.6614382-CDS-H-elongata_contig56666:1502..19311691679625.6614382-CDS-H-elongata_contig56666:1502..1931Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig56666 1503..1931 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig56666.13114.1prot_H-elongata_contig56666.13114.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig56666 1503..1931 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig56666.13114.1

>prot_H-elongata_contig56666.13114.1 ID=prot_H-elongata_contig56666.13114.1|Name=mRNA_H-elongata_contig56666.13114.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=143bp
MGGDGKQKSNFLVDFALGGVSGAIAKTCTAPIERVKLIIQTQDANPRIKS
GEIPRYTGIGNCFTRVYQEQGLSAFWRGNMTNIIRYFPTQAFNFAFKDSI
KALFPKANPKTEFWSFFAINMASGGLAGAGSLCFVYPLDYAR*
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mRNA from alignment at H-elongata_contig56666:1503..1931-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig56666.13114.1 ID=mRNA_H-elongata_contig56666.13114.1|Name=mRNA_H-elongata_contig56666.13114.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=429bp|location=Sequence derived from alignment at H-elongata_contig56666:1503..1931- (Himanthalia elongata Himel1 dioecious)
ATGGGTGGGGATGGGAAACAAAAGAGTAACTTCCTTGTGGATTTTGCCCT
CGGCGGAGTGAGTGGTGCAATCGCCAAGACCTGCACAGCCCCCATCGAGC
GTGTAAAGCTCATCATCCAAACGCAGGATGCCAACCCAAGGATCAAGTCG
GGTGAGATCCCTCGCTACACGGGCATCGGTAACTGCTTTACTCGTGTTTA
CCAGGAACAAGGCCTCAGTGCCTTCTGGCGTGGGAACATGACCAACATCA
TCCGGTACTTCCCGACCCAGGCGTTTAACTTCGCTTTTAAGGATTCTATT
AAGGCTCTCTTCCCGAAGGCCAACCCGAAGACCGAATTCTGGAGCTTCTT
CGCCATTAACATGGCTTCTGGTGGACTGGCCGGCGCCGGTTCTTTGTGCT
TCGTGTACCCTCTGGACTACGCCCGGTGA
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Coding sequence (CDS) from alignment at H-elongata_contig56666:1503..1931-

>mRNA_H-elongata_contig56666.13114.1 ID=mRNA_H-elongata_contig56666.13114.1|Name=mRNA_H-elongata_contig56666.13114.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=858bp|location=Sequence derived from alignment at H-elongata_contig56666:1503..1931- (Himanthalia elongata Himel1 dioecious)
ATGGGTGGGGATGGGAAACAAAAGAGTAACTTCCTTGTGGATTTTGCCCT
CGGCGGAGTGAGTGGTGCAATCGCCAAGACCTGCACAGCCCCCATCGAGC
GTGTAAAGCTCATCATCCAAACGCAGGATGCCAACCCAAGGATCAAGTCG
GGTGAGATCCCTCGCTACACGGGCATCGGTAACTGCTTTACTCGTGTTTA
CCAGGAACAAGGCCTCAGTGCCTTCTGGCGTGGGAACATGACCAACATCA
TCCGGTACTTCCCGACCCAGGCGTTTAACTTCGCTTTTAAGGATTCTATT
AAGGCTCTCTTCCCGAAGGCCAACCCGAAGACCGAATTCTGGAGCTTCTT
CGCCATTAACATGGCTTCTGGTGGACTGGCCGGCGCCGGTTCTTTGTGCT
TCGTGTACCCTCTGGACTACGCCCGGTGAATGGGTGGGGATGGGAAACAA
AAGAGTAACTTCCTTGTGGATTTTGCCCTCGGCGGAGTGAGTGGTGCAAT
CGCCAAGACCTGCACAGCCCCCATCGAGCGTGTAAAGCTCATCATCCAAA
CGCAGGATGCCAACCCAAGGATCAAGTCGGGTGAGATCCCTCGCTACACG
GGCATCGGTAACTGCTTTACTCGTGTTTACCAGGAACAAGGCCTCAGTGC
CTTCTGGCGTGGGAACATGACCAACATCATCCGGTACTTCCCGACCCAGG
CGTTTAACTTCGCTTTTAAGGATTCTATTAAGGCTCTCTTCCCGAAGGCC
AACCCGAAGACCGAATTCTGGAGCTTCTTCGCCATTAACATGGCTTCTGG
TGGACTGGCCGGCGCCGGTTCTTTGTGCTTCGTGTACCCTCTGGACTACG
CCCGGTGA
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