mRNA_H-elongata_contig56640.13109.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig56640.13109.1
Unique NamemRNA_H-elongata_contig56640.13109.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig56640.13109.1 vs. uniprot
Match: A0A6H5L5D8_9PHAE (PHS protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L5D8_9PHAE)

HSP 1 Score: 328 bits (842), Expect = 2.950e-102
Identity = 213/430 (49.53%), Postives = 250/430 (58.14%), Query Frame = 1 
Query:    1 VGPGARLPLPLRWSRVEDIRLRP------LPYVGKANASPPIN---PKNIPSIPSRGFGEEGQGAMTVYDYGYSDCSVLVPASRAGEKELGLMMSVIPWVACHPDGSYDRDLATMTTIITPAQKPLFLFLEGVDAHAGDGETTLDTREAGRSHNKTGGISGAGTSVHSLRPSTSVGERLIARST-----------STPTPVVSTKPANANEARNSLGSLLSASARGALSLRPLEVIVYASLSFRNLLPVGVGWRVVGARGDPGARVAEGWLGPGEGAHVLEANTMAVKPSFSFKVAGFDWTSPRQVSVKEI---TRRGVTQSS----------RDTGTPGASGKVDDVGEHGKELRQRPGIGLENIPCRDLANRVLYLSAEATSPRMNSVHVTIFAGFWVRNLSGLPLTLGEPIPTRASSFELQEERLSE 1191
            V PG RLPLPLRWSR EDIRLRP              +S P N   PK +  I     G   QG  +   Y YSDCSVLVPA+RAGE ELG   +VIPWVAC+P        A   T    ++KPLFLFLEG+DA+  DG         G S         + T   S         R++A ST           + PT VV        ++  S G  ++A     LSLRPLEV+VYASLSFRNLLPVGVGWRV GARGD GAR+AEGWL PG+G HVLEANTMA+ PS S KVAGFDWTSP QV+V E+   TR G T S           R    PG  G V    EH       PGI L+++PCR+++N++LYLS EA S RMNSV VT++AGFWVRNLSGLPLTLGEP+    S  EL EERL++
Sbjct:  167 VAPGGRLPLPLRWSRAEDIRLRPWXXXXXXXXXXXXRSSSPSNTSMPKKVVQIHDLAEGSGDQGERS---YEYSDCSVLVPAARAGEGELGATTAVIPWVACNPSQPSANSPADGDT--NASRKPLFLFLEGLDANDPDGGRHGAAIPGGGSRQNASSNPWSRTRRRSRDGGGRSSGRVVANSTLHGRQRQRPDAAFPTRVV--------DSPRSAGISMAA-----LSLRPLEVVVYASLSFRNLLPVGVGWRVAGARGDAGARLAEGWLAPGDGVHVLEANTMAMAPSLSLKVAGFDWTSPHQVAVAELMRPTREGSTGSDGXXXXXXXXXRGRELPG--GGVSTTSEH------VPGISLQSVPCRNMSNQILYLSVEAASVRMNSVLVTVYAGFWVRNLSGLPLTLGEPVSRGLSPLELHEERLAD 570
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BLAST of mRNA_H-elongata_contig56640.13109.1 vs. uniprot
Match: D7FMF6_ECTSI (SHR-BD domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FMF6_ECTSI)

HSP 1 Score: 326 bits (835), Expect = 2.110e-97
Identity = 210/429 (48.95%), Postives = 251/429 (58.51%), Query Frame = 1 
Query:    1 VGPGARLPLPLRWSRVEDIRLRPLPYV-------GKANASPPIN--PKNIPSIPSRGFGEEGQGAMTVYDYGYSDCSVLVPASRAGEKELGLMMSVIPWVACHPDGSYDRDLATMTTIITPAQKPLFLFLEGVDAHAGDGETTLDTREAGRSHNKTGGISGAGTSVHSLRPSTSVGERLIARST-----------STPTPVVSTKPANANEARNSLGSLLSASARGALSLRPLEVIVYASLSFRNLLPVGVGWRVVGARGDPGARVAEGWLGPGEGAHVLEANTMAVKPSFSFKVAGFDWTSPRQVSVKEI---TRRGVTQSS---------RDTGTPGASGKVDDVGEHGKELRQRPGIGLENIPCRDLANRVLYLSAEATSPRMNSVHVTIFAGFWVRNLSGLPLTLGEPIPTRASSFELQEERLSE 1191
            V PG RLPLPLRWSR EDIRLRP P         G+ ++SP  N  PK +  +     GE G      Y+Y  SDCSVLVPA+RAGE ELG   +VIPWVAC+P        A   T  T  +KPLFLFLEG+DA+  +G         G S  K      + T   S         R++A +T           S PT VV        ++  S G+ ++A     LSLRPLEV+VYASLSFRNLLPVGVGWRV GARGD GAR+AEGWL PG+G HVLEAN MA+ PS SFKVAGFDWT P QV+V E+   TR G T S                     V    EH       PGI L+++PCR+++N++LYLS EA S RMNSV VT+F+GFWVRNLSGLPLTLGEP+    S  EL EERL++
Sbjct:  283 VAPGGRLPLPLRWSRAEDIRLRPWPRSQGGGFGDGRRSSSPSNNSMPKKVVEVHHLA-GESGDQGERSYEY--SDCSVLVPAARAGEGELGATTAVIPWVACNPSQPSTNSPADGDT--TACRKPLFLFLEGLDANDPEGGGHGAAIPGGGSRRKASSDPWSKTRRTSRDGGGRSNSRVVANATLHGRQRQRPDASFPTRVV--------DSPRSAGNPMAA-----LSLRPLEVVVYASLSFRNLLPVGVGWRVAGARGDAGARLAEGWLTPGDGVHVLEANAMAMAPSLSFKVAGFDWTPPHQVAVAELMRPTRAGSTDSDGXXXXXXXXXXXXXXXXXXXVPTTSEH------VPGISLQSVPCRNMSNQILYLSVEAASVRMNSVLVTVFSGFWVRNLSGLPLTLGEPVSRGLSPLELHEERLAD 687
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig56640.13109.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5L5D8_9PHAE2.950e-10249.53PHS protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 Ta... [more]
D7FMF6_ECTSI2.110e-9748.95SHR-BD domain-containing protein n=1 Tax=Ectocarpu... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig56640contigH-elongata_contig56640:373..3185 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionVacuolar protein sorting-associated protein 13
Ec32 orthologEc-05_000910.1
Exons4
Model size1209
Cds size1209
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig56640.13109.1prot_H-elongata_contig56640.13109.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig56640 373..3185 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930920.8267682-CDS-H-elongata_contig56640:372..5961622930920.8267682-CDS-H-elongata_contig56640:372..596Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig56640 373..596 +
1691679625.3836725-CDS-H-elongata_contig56640:372..5961691679625.3836725-CDS-H-elongata_contig56640:372..596Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig56640 373..596 +
1622930920.8439367-CDS-H-elongata_contig56640:1208..18061622930920.8439367-CDS-H-elongata_contig56640:1208..1806Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig56640 1209..1806 +
1691679625.4036305-CDS-H-elongata_contig56640:1208..18061691679625.4036305-CDS-H-elongata_contig56640:1208..1806Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig56640 1209..1806 +
1622930920.8649735-CDS-H-elongata_contig56640:2245..24821622930920.8649735-CDS-H-elongata_contig56640:2245..2482Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig56640 2246..2482 +
1691679625.4191792-CDS-H-elongata_contig56640:2245..24821691679625.4191792-CDS-H-elongata_contig56640:2245..2482Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig56640 2246..2482 +
1622930920.8864088-CDS-H-elongata_contig56640:3035..31851622930920.8864088-CDS-H-elongata_contig56640:3035..3185Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig56640 3036..3185 +
1691679625.436891-CDS-H-elongata_contig56640:3035..31851691679625.436891-CDS-H-elongata_contig56640:3035..3185Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig56640 3036..3185 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig56640.13109.1

>prot_H-elongata_contig56640.13109.1 ID=prot_H-elongata_contig56640.13109.1|Name=mRNA_H-elongata_contig56640.13109.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=403bp
VGPGARLPLPLRWSRVEDIRLRPLPYVGKANASPPINPKNIPSIPSRGFG
EEGQGAMTVYDYGYSDCSVLVPASRAGEKELGLMMSVIPWVACHPDGSYD
RDLATMTTIITPAQKPLFLFLEGVDAHAGDGETTLDTREAGRSHNKTGGI
SGAGTSVHSLRPSTSVGERLIARSTSTPTPVVSTKPANANEARNSLGSLL
SASARGALSLRPLEVIVYASLSFRNLLPVGVGWRVVGARGDPGARVAEGW
LGPGEGAHVLEANTMAVKPSFSFKVAGFDWTSPRQVSVKEITRRGVTQSS
RDTGTPGASGKVDDVGEHGKELRQRPGIGLENIPCRDLANRVLYLSAEAT
SPRMNSVHVTIFAGFWVRNLSGLPLTLGEPIPTRASSFELQEERLSEHTS
WR*
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mRNA from alignment at H-elongata_contig56640:373..3185+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig56640.13109.1 ID=mRNA_H-elongata_contig56640.13109.1|Name=mRNA_H-elongata_contig56640.13109.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=2813bp|location=Sequence derived from alignment at H-elongata_contig56640:373..3185+ (Himanthalia elongata Himel1 dioecious)
GTTGGCCCCGGGGCCAGGCTACCGCTGCCGCTCAGATGGAGTCGCGTGGA
AGACATTAGGCTTCGCCCGTTGCCTTACGTTGGTAAAGCGAATGCATCAC
CGCCCATCAATCCAAAGAACATTCCCAGCATTCCTTCGCGGGGGTTCGGA
GAGGAGGGCCAAGGCGCCATGACGGTGTACGACTACGGCTACAGCGACTG
TTCGGTGCTCGTGCCGGCTTCAAGGTGCCTCGAGCTCGCTACATACGTAT
GGAGGCATTCACCGCGTCCGCTCCGTGCTGCTGTATCTGCGAAGATGGAT
ACGATGTCTCAAAGCTTGAAAGCCGGCGCCTCGATAATGCTGTGTCAGCC
TTTTGAGTTTGACTGTTGTTGTTTTATTCGAAGGAAATAGGGTTATCGGT
GTGCTCTGCGGGTATTTCCCGGTATTGTTAACGGTATTTCCCGGTATTGT
TAACAGTCCCCACCTACTACGAAGACGCCTCGTTACCCTCTCTACGTTTT
AAGGGAAGTAGCGGACCGTTGCCTCAGGACGCAATGGCGATCGATTTAGT
GTAAGTGTGCTGAACAATGAATCACTTTCGGGAGACAAAACGGTAGCTCG
TAGGTGGCAGTGCGAGGGGCACATACACATGCACACACACAGACGACGCC
AAAGCTTACGGCGCGTTGATCTCTAGAAGGGGGTTTGCTGTGGACAGATC
AGGGAAAACACCCGGAATTACTCAACAGGACGTGTCGTTTCTAGCTTCAT
CGATCGCGTGTTGTTCCATCTCCCTAAGCTCTCGCCGACCTCGTGTACCT
TGTGCACCTCTCTCGACCTCGGCCCGAGGGACACAGGGCAGGGGAGAAAG
AGCTAGGTCTGATGATGTCCGTCATCCCCTGGGTAGCCTGCCACCCAGAC
GGAAGCTACGACCGTGACCTGGCGACGATGACAACGATCATCACCCCCGC
GCAGAAGCCCCTGTTCCTCTTCTTGGAAGGCGTTGACGCCCACGCTGGAG
ACGGCGAGACCACCTTGGACACTAGAGAGGCCGGCCGCAGCCACAACAAA
ACCGGCGGCATCAGTGGTGCCGGCACTTCGGTGCACTCCCTTAGACCCAG
TACGAGCGTGGGAGAAAGATTGATCGCGAGGTCAACCTCGACCCCGACCC
CCGTCGTCTCGACTAAGCCAGCAAACGCCAACGAGGCCAGGAACTCCTTG
GGTTCCTTGCTCTCGGCGAGCGCGCGAGGGGCGCTCTCTCTCCGACCGCT
GGAGGTGATCGTCTATGCCTCCCTAAGCTTCCGCAATCTTTTGCCAGTCG
GGGTGGGGTGGAGGGTCGTGGGGGCGAGGGGGGACCCCGGTGCCAGAGTG
GCGGAAGGGTGGCTCGGCCCGGGAGAGGGGGCGCACGTGCTTGAGGCCAA
CACGATGGCGGTCAAGCCGTCGTTCTCCTTCAAGGTGATGGGATTTGATG
GGATGGGGTGATGAGATCGAGGAAAGGGATCGTTGGTACGTTATTTTTCA
TGCGCGGTTTTCTTTCAACGGGTAACATGTAGGTTTAGTCGTCTTCGTGT
CGATATCTGGGGGGAGCTGCTTGGTCCAAAAATATTTTCAGGCTCTCATT
TTTGGATTGGTGCCAAAATAATCCAGGCCCCATCTGTTATTTGCGTCCAA
GTATCCTCGTACTTGATTCGTTTAAAAATAAAAATAATCACTGCCCTCGT
TTCTGATTGGACTAAAACCCATTACGCTACCCAGCCTCTGTCTTTGATTA
ACCCCAAAACAATCCAACCCCCATTTTCCCATGAGTATCGAAATCATCCC
ATCCCATATTATTTTTCCATCGTTGATTGGTCCAACTATACCTTCCTCCA
TGTGTATGTGGTGGCGTGTTTAGGTAGCGGGGTTCGACTGGACATCTCCC
CGACAAGTCTCTGTGAAGGAAATCACACGAAGGGGCGTCACGCAAAGCTC
GAGAGACACGGGAACACCTGGCGCAAGTGGAAAGGTCGACGACGTGGGGG
AACACGGCAAAGAGCTGCGACAACGGCCAGGGATCGGGCTGGAGAACATC
CCCTGCCGCGACCTTGCAAATCGGGTTTTGTATCTCAGCGCAGAGGCAAC
ATCTCCAAGGGTAAGATGGGGTCGAGGGGGGGAGGGATACGCGTTTAGGC
AGCAGCTGGACGAGTTTTCTGGGATACTTTTGTGCGTGCAGAGCAACCGT
CTCGCCGTCTCGAGTCCGAATTATTATCTCCCCGCGTTTTGTGTCTTCCG
GCCCTGTCCTGTCCTGTCCTAGGTCAACCTTATCTCAGTCATCTGCGCTG
GTGGCTGTGTACTTGCTCCAAATACTCACGTGTCTCTTTTTTTGTCCTGT
ACTTTTTATTTTTGTCTTTTTTGTCTTGTCATTTTTTTGCTATCTTTTTA
TTTGTCTTGCCTTTTTTTGCCTTGACTTTTTTTTGGCGTGTCTTCCTTTT
TTCTCCTTTTTATTTTTGTTCCAATTATTTTTTTCGTTTTCATTTTTACT
ATTATTATTATTATTATTATTATTATTATTATTATTATTTGCTTTTTTCT
CTTTTCACGTTTCCCATGTTTCGTTTCACTCCTCCCTCTACTTTTGTTTA
CCCCGCCTCCGTCATTCAAGAATTGAAAACGCCTCCTTCCCCCATCCCCC
CCCCTCTTTTCAGATGAATTCGGTTCACGTGACAATTTTTGCCGGGTTCT
GGGTGAGAAATTTGAGCGGGCTGCCACTCACCCTGGGAGAGCCAATTCCT
ACACGAGCGTCGTCGTTCGAACTTCAGGAAGAGAGACTTTCCGAACACAC
GTCCTGGCGGTAA
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Coding sequence (CDS) from alignment at H-elongata_contig56640:373..3185+

>mRNA_H-elongata_contig56640.13109.1 ID=mRNA_H-elongata_contig56640.13109.1|Name=mRNA_H-elongata_contig56640.13109.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=2418bp|location=Sequence derived from alignment at H-elongata_contig56640:373..3185+ (Himanthalia elongata Himel1 dioecious)
GTTGGCCCCGGGGCCAGGCTACCGCTGCCGCTCAGATGGAGTCGCGTGGA
AGACATTAGGCTTCGCCCGTTGCCTTACGTTGGTAAAGCGAATGCATCAC
CGCCCATCAATCCAAAGAACATTCCCAGCATTCCTTCGCGGGGGTTCGGA
GAGGAGGGCCAAGGCGCCATGACGGTGTACGACTACGGCTACAGCGACTG
TTCGGTGCTCGTGCCGGCTTCAAGGTTGGCCCCGGGGCCAGGCTACCGCT
GCCGCTCAGATGGAGTCGCGTGGAAGACATTAGGCTTCGCCCGTTGCCTT
ACGTTGGTAAAGCGAATGCATCACCGCCCATCAATCCAAAGAACATTCCC
AGCATTCCTTCGCGGGGGTTCGGAGAGGAGGGCCAAGGCGCCATGACGGT
GTACGACTACGGCTACAGCGACTGTTCGGTGCTCGTGCCGGCTTCAAGGG
CAGGGGAGAAAGAGCTAGGTCTGATGATGTCCGTCATCCCCTGGGTAGCC
TGCCACCCAGACGGAAGCTACGACCGTGACCTGGCGACGATGACAACGAT
CATCACCCCCGCGCAGAAGCCCCTGTTCCTCTTCTTGGAAGGCGTTGACG
CCCACGCTGGAGACGGCGAGACCACCTTGGACACTAGAGAGGCCGGCCGC
AGCCACAACAAAACCGGCGGCATCAGTGGTGCCGGCACTTCGGTGCACTC
CCTTAGACCCAGTACGAGCGTGGGAGAAAGATTGATCGCGAGGTCAACCT
CGACCCCGACCCCCGTCGTCTCGACTAAGCCAGCAAACGCCAACGAGGCC
AGGAACTCCTTGGGTTCCTTGCTCTCGGCGAGCGCGCGAGGGGCGCTCTC
TCTCCGACCGCTGGAGGTGATCGTCTATGCCTCCCTAAGCTTCCGCAATC
TTTTGCCAGTCGGGGTGGGGTGGAGGGTCGTGGGGGCGAGGGGGGACCCC
GGTGCCAGAGTGGCGGAAGGGTGGCTCGGCCCGGGAGAGGGGGCGCACGT
GCTTGAGGCCAACACGATGGCGGTCAAGCCGTCGTTCTCCTTCAAGGGCA
GGGGAGAAAGAGCTAGGTCTGATGATGTCCGTCATCCCCTGGGTAGCCTG
CCACCCAGACGGAAGCTACGACCGTGACCTGGCGACGATGACAACGATCA
TCACCCCCGCGCAGAAGCCCCTGTTCCTCTTCTTGGAAGGCGTTGACGCC
CACGCTGGAGACGGCGAGACCACCTTGGACACTAGAGAGGCCGGCCGCAG
CCACAACAAAACCGGCGGCATCAGTGGTGCCGGCACTTCGGTGCACTCCC
TTAGACCCAGTACGAGCGTGGGAGAAAGATTGATCGCGAGGTCAACCTCG
ACCCCGACCCCCGTCGTCTCGACTAAGCCAGCAAACGCCAACGAGGCCAG
GAACTCCTTGGGTTCCTTGCTCTCGGCGAGCGCGCGAGGGGCGCTCTCTC
TCCGACCGCTGGAGGTGATCGTCTATGCCTCCCTAAGCTTCCGCAATCTT
TTGCCAGTCGGGGTGGGGTGGAGGGTCGTGGGGGCGAGGGGGGACCCCGG
TGCCAGAGTGGCGGAAGGGTGGCTCGGCCCGGGAGAGGGGGCGCACGTGC
TTGAGGCCAACACGATGGCGGTCAAGCCGTCGTTCTCCTTCAAGGTAGCG
GGGTTCGACTGGACATCTCCCCGACAAGTCTCTGTGAAGGAAATCACACG
AAGGGGCGTCACGCAAAGCTCGAGAGACACGGGAACACCTGGCGCAAGTG
GAAAGGTCGACGACGTGGGGGAACACGGCAAAGAGCTGCGACAACGGCCA
GGGATCGGGCTGGAGAACATCCCCTGCCGCGACCTTGCAAATCGGGTTTT
GTATCTCAGCGCAGAGGCAACATCTCCAAGGGTAGCGGGGTTCGACTGGA
CATCTCCCCGACAAGTCTCTGTGAAGGAAATCACACGAAGGGGCGTCACG
CAAAGCTCGAGAGACACGGGAACACCTGGCGCAAGTGGAAAGGTCGACGA
CGTGGGGGAACACGGCAAAGAGCTGCGACAACGGCCAGGGATCGGGCTGG
AGAACATCCCCTGCCGCGACCTTGCAAATCGGGTTTTGTATCTCAGCGCA
GAGGCAACATCTCCAAGGATGAATTCGGTTCACGTGACAATTTTTGCCGG
GTTCTGGGTGAGAAATTTGAGCGGGCTGCCACTCACCCTGGGAGAGCCAA
TTCCTACACGAGCGTCGTCGTTCGAACTTCAGGAAGAGAGACTTTCCGAA
CACACGTCCTGGCGGTAAATGAATTCGGTTCACGTGACAATTTTTGCCGG
GTTCTGGGTGAGAAATTTGAGCGGGCTGCCACTCACCCTGGGAGAGCCAA
TTCCTACACGAGCGTCGTCGTTCGAACTTCAGGAAGAGAGACTTTCCGAA
CACACGTCCTGGCGGTAA
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