mRNA_H-elongata_contig56615.13107.1 (mRNA) Himanthalia elongata Himel1 dioecious
|
Overview
Homology
BLAST of mRNA_H-elongata_contig56615.13107.1 vs. uniprot
Match: D7FWQ3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FWQ3_ECTSI) HSP 1 Score: 244 bits (623), Expect = 2.730e-69 Identity = 134/309 (43.37%), Postives = 189/309 (61.17%), Query Frame = 1
Query: 184 CWIFTHLQKSRGSSVKRVLRKRCPHCRSMIYDNRWWYHSTQAPLNFNNTMERH---NVIMGGYTEALRLQDPTFNICSWFTLFRHPISRMVSAFFYCKKKPSDVCCGTRNMPPEAQSDIIAFAKHWGNFAVRQFVMGLIPTENVLSYLQN----TMSEMDTRKASGWYLLKLYLE----------GQSSSNVSAQH----VEEEKLYPMLKHAQDSLSDRFVAVGILEEFNTSMYLFNAALRLPGINWPQEMVKTGIKNAEDEYQHEESQLLAKAWTNTELKSYMRLDLLLYEHAMGVFKSQAEYYDLV 1047
CW+F HLQK GS+VK +LR R R IYD+ W NF + R NV+ GGYTEALR +P C +FTLFRHPI+RMVSA+FYC+ D C + + + D++ FAKHWGNFAVRQF +G +P++ V Y++ + + D +K +GWY LK+YLE GQS + ++ +H E LY +L+ A D + +VAVGILE++NT+++LF+ AL +PG+ W + + G + + + + ES+ L +AWT++ELK YMRLDLLLYEHA+ VF QA Y L+
Sbjct: 156 CWVFMHLQKCGGSTVKYMLR-RSYGSRYSIYDSNQWKLGDDISANFGVKLARGETWNVMAGGYTEALRRSEPVDAGCRFFTLFRHPIARMVSAYFYCRSTLGDAACASEVVDAK-DVDLLTFAKHWGNFAVRQFALGFVPSDGVQEYIRTPEAQALHDFDLKKIAGWYQLKMYLERPEKGDWGVPGQSEA-MTVEHDAAATLEAPLYDLLQPAMDLIRSGYVAVGILEQWNTTLHLFDHALEIPGMYWGAQFAEGGKQRVDYKNKRLESETLKQAWTDSELKKYMRLDLLLYEHAVDVFHEQARGYGLL 461
BLAST of mRNA_H-elongata_contig56615.13107.1 vs. uniprot
Match: D7G716_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G716_ECTSI) HSP 1 Score: 223 bits (567), Expect = 2.780e-61 Identity = 123/301 (40.86%), Postives = 179/301 (59.47%), Query Frame = 1
Query: 157 TFQQEHNPA-CWIFTHLQKSRGSSVKRVLRKRCPHCRSMIYDNRWWYHSTQAPLNFNNTM---ERHNVIMGGYTEALRLQDPTFNICSWFTLFRHPISRMVSAFFYCKKKPSDVCCGTRNMPPEAQSDIIAFAKHWGNFAVRQFVMGLIPTENVLSYLQNTMSEMDTRKASGWYLLKLYLEGQSSSNVSAQHVEEEKLYPMLKHAQDSLSDRFVAVGILEEFNTSMYLFNAALRLPGINWPQEMVKTGIKNAEDEYQHEESQLLAKAWTNTELKSYMRLDLLLYEHAMGVFKSQAEYYDLV 1047
T Q +P CW+F HLQK GS+VK +L R R IYD+ W + F + ++ NV+ GGYTEALRL +P C +FTLFRHPI+RMVSA+FYC+ DV C + M + D++ FAKHWGNFA+RQF +G +P+++V Y E ++ G L +++ A + LY +L+ A D + D +VAVGILE++NT++ LF+ L +P +NW ++ ++G + + + E + L +AWT++ELK YMRLDLLLYEHA+ VF QA + L+
Sbjct: 167 TVQSPASPGQCWVFMHLQKCGGSTVKDLLEDRWG-SRFFIYDSMRWKFGDEFSAKFGAKLALGDKWNVMTGGYTEALRLSEPVGAGCRFFTLFRHPIARMVSAYFYCRSVSGDVACASEVMQAK-DVDLLTFAKHWGNFALRQFALGFVPSDDVQEYQLKMYLERPQKEDGG----VLGQREAMTAHQDAAATPDAPLYELLQPAMDLVRDGYVAVGILEQWNTTLRLFDHTLDMPVMNWEEQFAESGKHHVDIVNKQLEIETLQQAWTDSELKKYMRLDLLLYEHAVDVFHQQARSHGLL 461
BLAST of mRNA_H-elongata_contig56615.13107.1 vs. uniprot
Match: D7FS84_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FS84_ECTSI) HSP 1 Score: 184 bits (466), Expect = 8.230e-49 Identity = 106/304 (34.87%), Postives = 169/304 (55.59%), Query Frame = 1
Query: 202 LQKSRGSSVKRVLRK--RCPHCRSMIYDNRWWYHSTQAPLNFNNTMERHNVIMGGYTEALR-LQDPTFNICSWFTLFRHPISRMVSAFFYCKKKPSDVCCGTRNMPPEAQ-SDIIAFAKHWGNFAVRQFVMGLI-PTENVLSYLQNTMSEMDT-----RKASGWYLLKLYLE-------------GQSSSNVSAQHVEEEKLYPMLKHAQDSLSDRFVAVGILEEFNTSMYLFNAALRLPGINWPQEMVKTGIKNAEDEYQHEESQLLAKAWTNTELKSYMRLDLLLYEHAMGVFKSQAEYYDL 1044
+ K+ GS+VK +L + + +YD+ W +F + ++++ G YTE LR C WFT+FRHPI R+VSA+FYCKKKP D C T + A +D+ AFA+HWG+F +RQF + + P E + + ++ + + T R GWY LKLYL+ G S +A + +L+ Q+ L++ + AVG+LE++ TS+ LFN AL +PG +WP+ G KN++ + +EE+++L ++WT+ L+ Y+ LDLLLY++A+ V Q + Y L
Sbjct: 1 MNKAGGSTVKYMLAPWTKAQNVTVGLYDSPQWLEGKDFAQDFLG--DENSLMWGAYTEGLRPFGGLGLRECKWFTIFRHPIPRLVSAYFYCKKKPQDGLCATVALDANADDTDLYAFAEHWGDFGLRQFALAFVLPEELLANKVKYDATGICTPYHGKRSCPGWYELKLYLQQQLDEQEQGEGSRGWDGSGAAASGAAT--ISHLLQPVQELLTNEYAAVGVLEQWETSLLLFNEALGMPGFDWPETFGSIGKKNSDGTFHNEEAEMLLRSWTDPRLRRYLSLDLLLYDYAVSVHNQQVDKYGL 300
BLAST of mRNA_H-elongata_contig56615.13107.1 vs. uniprot
Match: D7G715_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G715_ECTSI) HSP 1 Score: 184 bits (467), Expect = 6.810e-48 Identity = 112/342 (32.75%), Postives = 177/342 (51.75%), Query Frame = 1
Query: 79 LHGSGHSEVTGLPKNYEHPSFGLTTPTFQQEHNPA----CWIFTHLQKSRGSSVKRVLRKRCPHCRSMIYDNRWWYHSTQAPLNFNNTMERH---NVIMGGYTEALRLQDPTFNI------CSWFTLFRHPISRMVSAFFYCKKKPSDVCCGTRNMPPEAQSDIIAFAKHWGNFAVRQFVMGLIPTENVLSYLQNT-------MSEMDTRKASGWYLLKLYLEGQSSSNVSAQHVEEEKLYPMLKHAQDSLSDRFVAVGILEEFNTSMYLFNAALRLPGINWPQEMVKTGIKNAEDEYQHEESQLLAKAWTNTELKSYMRLDLLLYEHAMGVFKSQAEYYDL 1044
L+G H+ V LP+ P E +P CWIF HLQK+ G++VKR+L S YD+ W + ++ + GGY EALR + P F C WFT+FRHP+SR+VSA++YC++ PSD C + + D++ FA+HWGNFA+RQF +G + + V +L + ++ GWY+LKL+L +S E +L M + D L D + VGILE++N ++ LF++AL +PG+ W +E ++G N + ++ E+ +L +A ++ E+ ++ LDL LY A+ +F Q Y +
Sbjct: 51 LYGGHHAHV--LPRPDAAEKSPQDAPALNIEDSPRSENRCWIFNHLQKAGGTTVKRLLFDSWG-SESTTYDSYQWKKGQGYAESVAASLASPAGWSAAAGGYLEALR-RTPAFQPDDERTPCRWFTVFRHPVSRLVSAYYYCREDPSDQLCASEFVSSR-NVDLVTFARHWGNFALRQFALGFVSHDKVKDFLVSPNGGGAMGLTAEQVELMPGWYMLKLFLNDRSGV-ADDTSPEGTRLEYMFRPVVDLLRDNYAVVGILEDWNATLSLFDSALDMPGMTWREEFERSGKLNVDTRFKGEKQDVLQQALSDPEIVKHLSLDLRLYGQAVDIFNQQRHSYGI 386
BLAST of mRNA_H-elongata_contig56615.13107.1 vs. uniprot
Match: A0A6H5JY77_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JY77_9PHAE) HSP 1 Score: 176 bits (445), Expect = 1.920e-45 Identity = 103/294 (35.03%), Postives = 162/294 (55.10%), Query Frame = 1
Query: 184 CWIFTHLQKSRGSSVKRVLRKRCPH--CRSMIYDNRWWYHSTQAPLNFNNTMERHNVIM--GGYTEALRLQDPTFNICSWFTLFRHPISRMVSAFFYCKKKPSDVCCGTRNMPPEAQSDIIAFAKHWGNFAVRQFVMGLIPTENVLSYLQNTMSEMDTRKASG--------WYLLKLYLEGQSSSNVSAQHVEEEKLYPMLKHAQDSLSDRFVAVGILEEFNTSMYLFNAALRLPGINWPQEMVKTGIKNAE-DEYQHEESQLLAKAWTNTELKSYMRLDLLLYEHAMGVFKSQ 1026
CW+F+H+ KS G +V++++ + ++D+ W + ++ T + N + GGYTE LR+ D C WFT+FRHP+SR+VSA+FYC++ D C + ++ D++ FA+HWGN+ +RQF + I E+V + +SE ++A G WY K YL + E L L AQ++LS R+ AVGI+EE++ SM LFN L L +W +E K+G KN+ +++ L AW + ELK ++ LD+LLY+HA+ V +SQ
Sbjct: 52 CWVFSHMNKSGGMTVRKMIMPFLTEKGVSTALFDDIEW----SSGRSYAETFVKENAVFTYGGYTEGLRMYDD--RDCKWFTVFRHPVSRVVSAYFYCQRAHHDQLCAAVVLDA-SKVDLLTFAEHWGNYGLRQFALASIKAEDV--FHNEVVSEF-CQQARGHGDVCIPAWYRQKHYLHLPHQDDFCGPTQPESGLAQFLSSAQETLSTRYAAVGIIEEWDNSMELFNRVLNLRRFDWVKEFQKSGKKNSGGSQFETASKSALKAAWHSPELKKFIWLDILLYDHALSVHRSQ 335
BLAST of mRNA_H-elongata_contig56615.13107.1 vs. uniprot
Match: A0A6H5JQY7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JQY7_9PHAE) HSP 1 Score: 172 bits (437), Expect = 1.390e-44 Identity = 115/340 (33.82%), Postives = 171/340 (50.29%), Query Frame = 1
Query: 67 WVSWLHGSGHS-EVTGLPKNYEHPSFGLTTPTFQQEHNPACWIFTHLQKSRGSSVKRVLRKRCPHCRSMIYDNRWWYHSTQAPLNFNNTME----RHNVIMGGYTEALRLQDPTFNICSWFTLFRHPISRMVSAFFYCKKKPSDVCCGTRNMPPEAQSDIIAFAKHWGNFAVRQFVMGLIPTENVLSYLQNTMSEMDTRKASGWYLLKLYLEGQ--------SSSNVSAQHVEEEKLYP-MLKHAQDSLSDRFVAVGILEEFNTSMYLFNAALRLPGINWPQEMVKTGIKNAEDEYQHEESQLLAKAWTNTELKSYMRLDLLLYEHAMGVFKSQAEYYDL 1044
WV W G E+ + P L+ P ACW++T + K+ G+S++R+++ + + + + TQ + R ++I G YTE LR C WFT+ RHPI+R+VSAF YC PSD C TR PE DI FA+HWGN V QF + ++L ++E+ K+ WY KLY EG+ +S+N+S + V + P +L+ ++ L ++ AVGILE++ TSM LF+ AL+LPG NW + +N D ++ LL + T+ LK + LD+LLYEHA V K+Q Y L
Sbjct: 5 WVCWPLALGALLELAAANVGSDSPELSLSPP--------ACWVYTDMNKAGGTSIRRMIKDYAAATNTTVGE----FTHTQYNAGDRGVQQILDRRPSLIWGAYTEGLRPYATVLG-CKWFTMVRHPIARLVSAFNYCGIVPSDQLCATRIHKPE-DGDIYDFAEHWGNHGVVQFALAFEDLNDIL------VTEV---KSPPWYKAKLYFEGRLGPSGKTSTSANISTKDVCQNVWMPEILQPVEELLRSKYAAVGILEQWETSMMLFDHALQLPGFNWTSTSASSTPRNVHDS--KAKNDLLVASMTDPVLKQILWLDILLYEHACSVHKAQLSRYGL 319
BLAST of mRNA_H-elongata_contig56615.13107.1 vs. uniprot
Match: A0A6H5JNJ0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JNJ0_9PHAE) HSP 1 Score: 168 bits (425), Expect = 6.680e-43 Identity = 106/315 (33.65%), Postives = 160/315 (50.79%), Query Frame = 1
Query: 133 PSFGLTTPTFQQEHNPACWIFTHLQKSRGSSVKRVLRKRCPHCRSMIY--DNRWWYHSTQAPLNFNNTMERHNVIMGGYTEALRLQDPTFNICSWFTLFRHPISRMVSAFFYCKKKPSDVCCGTRNMPPEAQSDIIAFAKHWGNFAVRQFVMGLIPTENVLSYLQNTMSEMDTRKASGWYLLKLYLEGQ-------SSSNVSAQHVEEEKLY--PMLKHAQDSLSDRFVAVGILEEFNTSMYLFNAALRLPGINWPQEMVKTGIKNAEDEYQHEESQLLAKAWTNTELKSYMRLDLLLYEHAMGVFKSQAEYYDL 1044
P L+TPT CW+FTH K+ G++VK LR + + W+ + + N ++ +I GGY E LR F C WFT+ RHPI+R++SAF+YC D C PE DI FAKHWGN+A+ QF +G++ + + E+D A W+ KLY EG+ S++ H E + ++ +L+ ++ L + AVGILE + SM LF+ AL +PG NW + ++++ E+ +LA A T+ L+ Y+ LDLLLYE+A + + Q YDL
Sbjct: 28 PELSLSTPT--------CWVFTHNNKAGGTTVKTHLRNYAESRNETVALCHSDWYARGDKGIQDLLN--DKPVLIAGGYAEGLRTS--AFQGCKWFTMMRHPIARLISAFYYCSGGNRDQLCAANIHKPE-DGDIYDFAKHWGNYALLQFALGVVDQHEIFA------EEVD---APAWFKAKLYFEGRLGYPGNMSTATNRTTHDEWQSVWIPDILQPVEELLRSNYAAVGILEHWQRSMMLFDHALEIPGFNWTVASASLSPRKSQNKIV-EKKAMLAAAMTDPVLRQYVWLDLLLYEYACSLHEEQLRRYDL 319
BLAST of mRNA_H-elongata_contig56615.13107.1 vs. uniprot
Match: A0A6H5L061_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L061_9PHAE) HSP 1 Score: 129 bits (323), Expect = 4.670e-30 Identity = 74/215 (34.42%), Postives = 111/215 (51.63%), Query Frame = 1
Query: 421 FRHPISRMVSAFFYCKKKPSDVCCGTRNMPPEAQSDIIAFAKHWGNFAVRQFVMGLIPTENVLSYLQNTMSEMDTRKASGWYLLKLYLEGQSSSNVSAQHVEEE------KLYPMLKHAQDSLSDRFVAVGILEEFNTSMYLFNAALRLPGINWPQEMVKTGIKNAEDEYQHEESQLLAKAWTNTELKSYMRLDLLLYEHAMGVFKSQAEYYDLV 1047
++ PI R+VSA+FYCK+ D C + + +D+ FAKHWGN+ +RQF + + E+V + Q + GWY +K Y E Q ++E + +L+ +D LS + AVGILE++ TSM LFN AL++P NW G KN + EE+ L AW + L + LD+ LY+HA+ V Q E + +V
Sbjct: 18 YKCPIPRLVSAYFYCKQNGWDELCASMVLKA-GNTDLHTFAKHWGNYGLRQFSLAFVGAEDVFAAEQERGIDGRPVMFPGWYRVKEYFENQFDVEQERALMQETGASNDLAMSYLLQPVEDLLSRNYSAVGILEKWETSMTLFNKALKVPSFNWQTASRNLGRKNVDKRLHDEEAHALRAAWDDPVLAKTLWLDIFLYDHAVAVHNKQVEEHGIV 231
BLAST of mRNA_H-elongata_contig56615.13107.1 vs. uniprot
Match: A0A6H5JT23_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JT23_9PHAE) HSP 1 Score: 90.1 bits (222), Expect = 5.980e-16 Identity = 84/298 (28.19%), Postives = 128/298 (42.95%), Query Frame = 1
Query: 184 CWIFTHLQKSRGSSVKRVLRKRC-----PHCRSMIYDNRWWYHSTQAPLNFNNTMERHNVIMGGYTEALRLQDPTFNI---CSWFTLFRHPISRMVSAFFYCKKKPSD--------VCCGTRNMPPEAQSDIIAFAK-HWGNFAVRQFVMGLIPTENVLSYLQNTMSEMDTRKASGWYLLKLYLEGQSSSNVSAQHVEEEKLYPMLKHAQDSLSDRFVAVGILEEFNTSMYLFNAALRLPGINWPQEMVKTGIKNAEDEYQHEESQLLAKAWTNTELKSYMRLDLLLYEHAMGVFKSQ 1026
C +F H+ KS GS++K L P S + +S + N + ++ GY E +R P + C +FTL RHP+ R+VSAFFYC P+D CG + P A ++ FA+ HW N A +Q G+ ++ +E++T A ++E +L+ +D LS + AVGI+E ++ SM LFNA +R P +W M E + E +L A + + M DLLLY A+ +FK Q
Sbjct: 41 CTVFHHMVKSGGSTIKHNLHISSRAAGGPRPGSCVAGGGKRINSCKEAFN-------SSAVIMGYAELMRQDGPLEAVRRDCEYFTLLRHPVDRLVSAFFYC---PTDHDLQLRPPKWCGYADDPLPATDRLLEFAQQHWKNMAYKQMTFGMYCPHGLIC----EATEVET----------------------APGLDEPHGLDVLQKVEDILSG-YTAVGIMEHWDLSMQLFNARVRSPVRDW--NMTVRSNAGLPSELRDE---VLQWAHDSPVIHRLMATDLLLYSFALSIFKRQ 296
BLAST of mRNA_H-elongata_contig56615.13107.1 vs. uniprot
Match: D7G5K0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G5K0_ECTSI) HSP 1 Score: 86.3 bits (212), Expect = 3.520e-14 Identity = 82/299 (27.42%), Postives = 130/299 (43.48%), Query Frame = 1
Query: 184 CWIFTHLQKSRGSSVKRVLRKRCPH---CRSMIYDNRWWYHSTQAPLNFNNTMERHNVIMGGYTEALRLQ-DPTFNICSWFTLFRHPISRMVSAFFYCKKKPSD--------VCCGTRNMPPEAQSDIIAFAKH-WGNFAVRQFVMGLIPTENVLSYLQNTMSEMDTRKASGWYLLKLYLEGQSSSNVSAQHVEEEKLYPMLKHAQDSLSDRFVAVGILEEFNTSMYLFNAALRLPGINWPQEM-----VKTGIKNAEDEYQHEESQLLAKAWTNTELKSYMRLDLLLYEHAMGVFKSQ 1026
C +F H+ KS GS+VK +L + + R + N + T A L N+ + I+ GY E +R + C +FT+ RHPI R+VSAFFYC P+D CG P A ++ FA+ W N A +Q GL + + S Q ++E + +L+ Q++L+ + AVGI+E ++ SM LFNA +R P W V +G+++ ++ HE + + + D+LLY A+ +FK Q
Sbjct: 147 CTVFHHMVKSAGSTVKSLLHRATRNEGLPRPAVCIN--GHARTDACLEAINS----SAIITGYAELIRYPLEVNRRECDYFTMLRHPIDRLVSAFFYC---PTDHDVQLRPRKWCGHAEHPVPATERLLDFAQESWQNKAFKQMTFGLYCPPDTFC--------------------------DEAEVESPQMLDEPGMLDILQQVQNTLAG-YTAVGIMEHWDLSMQLFNARVRSPVREWNMFKQRNPGVMSGLRDEVLQWAHE----------SPAIHRVIGTDMLLYYFALSIFKQQ 399 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig56615.13107.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 24
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig56615.13107.1 >prot_H-elongata_contig56615.13107.1 ID=prot_H-elongata_contig56615.13107.1|Name=mRNA_H-elongata_contig56615.13107.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=345bp MRASSSHWLTLLLEVMLWVSWLHGSGHSEVTGLPKNYEHPSFGLTTPTFQback to top mRNA from alignment at H-elongata_contig56615:2..2372- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig56615.13107.1 ID=mRNA_H-elongata_contig56615.13107.1|Name=mRNA_H-elongata_contig56615.13107.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=2371bp|location=Sequence derived from alignment at H-elongata_contig56615:2..2372- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig56615:2..2372- >mRNA_H-elongata_contig56615.13107.1 ID=mRNA_H-elongata_contig56615.13107.1|Name=mRNA_H-elongata_contig56615.13107.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=2070bp|location=Sequence derived from alignment at H-elongata_contig56615:2..2372- (Himanthalia elongata Himel1 dioecious)back to top |