mRNA_H-elongata_contig56585.13104.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig56585.13104.1
Unique NamemRNA_H-elongata_contig56585.13104.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig56585.13104.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig56585contigH-elongata_contig56585:2286..2728 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size443
Cds size330
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930920.3919375-UTR-H-elongata_contig56585:2285..23981622930920.3919375-UTR-H-elongata_contig56585:2285..2398Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig56585 2286..2398 +
1691679625.1954057-UTR-H-elongata_contig56585:2285..23981691679625.1954057-UTR-H-elongata_contig56585:2285..2398Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig56585 2286..2398 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930920.4108834-CDS-H-elongata_contig56585:2398..27281622930920.4108834-CDS-H-elongata_contig56585:2398..2728Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig56585 2399..2728 +
1691679625.2050793-CDS-H-elongata_contig56585:2398..27281691679625.2050793-CDS-H-elongata_contig56585:2398..2728Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig56585 2399..2728 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig56585.13104.1prot_H-elongata_contig56585.13104.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig56585 2399..2728 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig56585.13104.1

>prot_H-elongata_contig56585.13104.1 ID=prot_H-elongata_contig56585.13104.1|Name=mRNA_H-elongata_contig56585.13104.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=110bp
MLEEGRNFDKRLTCLEQDARQPRLAMEADGFADTKTREREEGAAKAVQAM
DGENCSANRVDLNPMCSTSFGTDRIEPPAPPCSAEIALVDNDAVALKSCL
IFSEMRTPTD
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mRNA from alignment at H-elongata_contig56585:2286..2728+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig56585.13104.1 ID=mRNA_H-elongata_contig56585.13104.1|Name=mRNA_H-elongata_contig56585.13104.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=443bp|location=Sequence derived from alignment at H-elongata_contig56585:2286..2728+ (Himanthalia elongata Himel1 dioecious)
GCAATGGCCCCGTCCCTCAGTAAGAAGATTATGGGTCTGAAGAACCCACG
CTAGCGGACTTCTTACGACTAGCCAAGGAACGACTAGGTCGACGGGAAAA
GCAGCTCGACAAGATGTTGGAAGAAGGGAGAAACTTCGACAAGCGTCTGA
CATGCCTAGAGCAGGACGCTCGGCAGCCACGTCTTGCCATGGAGGCAGAC
GGGTTCGCAGACACGAAGACTCGCGAGCGCGAGGAAGGCGCCGCTAAAGC
AGTTCAAGCAATGGATGGGGAAAACTGTTCTGCAAATCGGGTTGACCTCA
ACCCGATGTGTTCTACCAGCTTCGGTACTGACCGCATCGAACCTCCGGCA
CCCCCTTGCTCAGCGGAGATTGCCCTGGTAGACAATGACGCTGTGGCGCT
TAAGTCATGTCTCATATTCTCGGAGATGCGCACACCAACTGAC
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Coding sequence (CDS) from alignment at H-elongata_contig56585:2286..2728+

>mRNA_H-elongata_contig56585.13104.1 ID=mRNA_H-elongata_contig56585.13104.1|Name=mRNA_H-elongata_contig56585.13104.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=660bp|location=Sequence derived from alignment at H-elongata_contig56585:2286..2728+ (Himanthalia elongata Himel1 dioecious)
ATGTTGGAAGAAGGGAGAAACTTCGACAAGCGTCTGACATGCCTAGAGCA
GGACGCTCGGCAGCCACGTCTTGCCATGGAGGCAGACGGGTTCGCAGACA
CGAAGACTCGCGAGCGCGAGGAAGGCGCCGCTAAAGCAGTTCAAGCAATG
GATGGGGAAAACTGTTCTGCAAATCGGGTTGACCTCAACCCGATGTGTTC
TACCAGCTTCGGTACTGACCGCATCGAACCTCCGGCACCCCCTTGCTCAG
CGGAGATTGCCCTGGTAGACAATGACGCTGTGGCGCTTAAGTCATGTCTC
ATATTCTCGGAGATGCGCACACCAACTGACATGTTGGAAGAAGGGAGAAA
CTTCGACAAGCGTCTGACATGCCTAGAGCAGGACGCTCGGCAGCCACGTC
TTGCCATGGAGGCAGACGGGTTCGCAGACACGAAGACTCGCGAGCGCGAG
GAAGGCGCCGCTAAAGCAGTTCAAGCAATGGATGGGGAAAACTGTTCTGC
AAATCGGGTTGACCTCAACCCGATGTGTTCTACCAGCTTCGGTACTGACC
GCATCGAACCTCCGGCACCCCCTTGCTCAGCGGAGATTGCCCTGGTAGAC
AATGACGCTGTGGCGCTTAAGTCATGTCTCATATTCTCGGAGATGCGCAC
ACCAACTGAC
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