mRNA_H-elongata_contig56473.13096.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig56473.13096.1
Unique NamemRNA_H-elongata_contig56473.13096.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig56473.13096.1 vs. uniprot
Match: A0A6H5L5U2_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L5U2_9PHAE)

HSP 1 Score: 276 bits (707), Expect = 9.940e-88
Identity = 146/313 (46.65%), Postives = 192/313 (61.34%), Query Frame = 1
Query:    4 YEDETGFVILTLYVDDILFLSASKTLINKLKKQLMDQFEMSDISDVSRILGMNVTRDREKRTITISQKDYTEDMVTRF---------------------------------------------------DILYAVNQLARTMSKPAKAYLGATKHLFRYLAISADFSITYKQGGFSLAAFSDVNWGNDPDNGRSK*SYIVMLANAPVSFKVGLQGLTTQSMMEAELVVAALTMKEAVFCSNVILKLGFDESFGSVPLYIDSTSALHVAGNRTYSPRAMHIALRYFFVQGLVEDGKISIHYVKAEDQLADLGTK 789
            Y+     + LTLYVDD+L        I+ +K +L  +F+M+D+ + S +LGM + RDRE  T+TISQ+ Y + ++ RF                                                   DI+YA  QLAR M+KP+K ++ A KH  RYLA + DFSITYK+GGF LA FSD NW N+PDNG+S  SY+ MLANAP+SF+ GLQGLT  S MEAELV +AL MKEAVFCSN++ +LGF + F  +P+Y D+T+ LH  GNR++S R  HIALR+FF++ LV +GKISIHY   ED LAD+GTK
Sbjct:  106 YDHNGAKIYLTLYVDDLLLAGNDSDAISMVKGKLQKRFKMTDLGEASLVLGMEIRRDREANTLTISQEAYCKSILERFGMSGSKPTSTPGYGSEISNIQPEDTLLDEKETRKYQGIVGSLMYIAQVLRYDIMYATGQLARPMAKPSKVHMVAAKHTLRYLAGTIDFSITYKKGGFKLATFSDSNWANNPDNGKSTSSYLTMLANAPMSFRSGLQGLTAMSTMEAELVASALAMKEAVFCSNMMTELGFGKEFAQLPVYCDNTATLHALGNRSFSSRTKHIALRFFFIRELVTEGKISIHYFPTEDNLADIGTK 418          
BLAST of mRNA_H-elongata_contig56473.13096.1 vs. uniprot
Match: A0A6H5KNH5_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KNH5_9PHAE)

HSP 1 Score: 276 bits (707), Expect = 8.660e-83
Identity = 146/313 (46.65%), Postives = 193/313 (61.66%), Query Frame = 1
Query:    4 YEDETGFVILTLYVDDILFLSASKTLINKLKKQLMDQFEMSDISDVSRILGMNVTRDREKRTITISQKDYTEDMVTRF---------------------------------------------------DILYAVNQLARTMSKPAKAYLGATKHLFRYLAISADFSITYKQGGFSLAAFSDVNWGNDPDNGRSK*SYIVMLANAPVSFKVGLQGLTTQSMMEAELVVAALTMKEAVFCSNVILKLGFDESFGSVPLYIDSTSALHVAGNRTYSPRAMHIALRYFFVQGLVEDGKISIHYVKAEDQLADLGTK 789
            Y+     + LTLYVDD+L        I+ +K +L  +F+M+D+ + S +L M + RDRE  T+TISQ+ Y + ++ RF                                                   DI+YA  QLAR M+KP+K ++ A KH  RYLA + DFSITYK+GGF LA FSD NW N+PDNG+S  SY+ MLANAP+SF+ GLQGLT  S MEAELV +AL MKEAVFCSN++ +LGF + F  +P+Y D+T+ LH  GNR++S R  HIALR+FF++ LV +GKISIHYV+ ED LAD+GTK
Sbjct:  666 YDHNGAKIYLTLYVDDLLLAGNDSDAISMVKGKLQKRFKMTDLGEASLVLRMEIRRDREANTLTISQEAYCKSILERFGMSGSKPTSTPGYGSEISNIQPEDTLLDEKETRKYQGIVGSLMYIAQVLRYDIMYATGQLARPMAKPSKVHMVAAKHTLRYLAGTIDFSITYKKGGFKLATFSDSNWANNPDNGKSTSSYLTMLANAPMSFRSGLQGLTAMSTMEAELVASALAMKEAVFCSNMMTELGFGKEFAQLPVYCDNTATLHALGNRSFSSRTKHIALRFFFIRELVTEGKISIHYVRTEDNLADIGTK 978          
BLAST of mRNA_H-elongata_contig56473.13096.1 vs. uniprot
Match: A0A6H5KJH6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJH6_9PHAE)

HSP 1 Score: 271 bits (692), Expect = 1.870e-79
Identity = 144/313 (46.01%), Postives = 191/313 (61.02%), Query Frame = 1
Query:    4 YEDETGFVILTLYVDDILFLSASKTLINKLKKQLMDQFEMSDISDVSRILGMNVTRDREKRTITISQKDYTEDMVTRF---------------------------------------------------DILYAVNQLARTMSKPAKAYLGATKHLFRYLAISADFSITYKQGGFSLAAFSDVNWGNDPDNGRSK*SYIVMLANAPVSFKVGLQGLTTQSMMEAELVVAALTMKEAVFCSNVILKLGFDESFGSVPLYIDSTSALHVAGNRTYSPRAMHIALRYFFVQGLVEDGKISIHYVKAEDQLADLGTK 789
            Y+     + LTLYVDD+L        I+ +K +L  +F+M+D+ + S +LGM + RDRE  T+TISQ+ Y + ++ RF                                                   DI+YA  QLAR M+KP+K ++ A KH  RYLA + DFSITYK+GGF LA FSD NW N+PDNG+S  SY+ +LANAP+SF+ GLQGLT  S MEAELV +AL M EAVF SN++ +LGF + F  +P+Y D+T+ LH  GNR++S R  HIALR+FF++ LV +GKISIHYV  ED LAD+GTK
Sbjct: 1335 YDHNGAKIYLTLYVDDLLLAGNDSDAISMVKGKLQKRFKMTDLGEASLVLGMEIRRDREANTLTISQEAYCKSILERFGISGSKPTSTPGYGSEISNIQPEDTLLDEKETRKYQGIVGSLMYIAQVLRYDIMYATGQLARPMAKPSKVHMVAAKHTLRYLAGTIDFSITYKKGGFKLATFSDSNWANNPDNGKSTSSYLTVLANAPMSFRSGLQGLTAMSTMEAELVASALAMNEAVFFSNMMTELGFGKEFAQLPVYCDNTATLHALGNRSFSSRTKHIALRFFFIRELVTEGKISIHYVPTEDNLADIGTK 1647          
BLAST of mRNA_H-elongata_contig56473.13096.1 vs. uniprot
Match: A0A6H5J6N1_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J6N1_9PHAE)

HSP 1 Score: 253 bits (646), Expect = 5.770e-78
Identity = 138/276 (50.00%), Postives = 185/276 (67.03%), Query Frame = 1
Query:    1 VYEDETGFVILTLYVDDILFLSASKTLINKLKKQLMDQFEMSDISDVSRILGMNVTRDREKRTITISQKDYTEDMVTRFDI-------LYAV--------------------NQLARTMSKPAKAYLGATKHLFRYLAISADFSITYKQGGFSLAAFSDVNWGNDPDNGRSK*SYIVMLANAPVSFKVGLQGLTTQSMMEAELVVAALTMKEAVFCSNVILKLGFDESFGSVPLYIDSTSALHVAGNRTYSPRAMHIALRYFFVQGLVEDGKISIH 747
            +Y+     VI+TLYVDD++ +  +  +I  +K +LM+QF+MS + +VS +LGM VTRD E  T+TI+Q DYT  ++ RF +       + +V                    +QLAR MSK AKA++GA KHL R    + DF ITYK+GGF L AFSD NW ++PDN RS  SY++M++ APVSFK GLQ LT  S MEAEL+ AALTMKEAVFCSN++ +LGF + FG VPLYI++T+ LHV GN+ YS R  HIAL +F V+ LV++G I+IH
Sbjct:  228 IYKRNHTIVIITLYVDDLVVIGGNIEVIEAIKTKLMEQFQMSVLGNVSLVLGMQVTRDGEHGTLTITQADYTRSILARFGMEECKPTSIPSVGSELSTEQPTETVLNKEKTQSQLARVMSKAAKAHMGAAKHLLRG---TQDFCITYKRGGFKLTAFSDANWESNPDNARSTSSYMIMMSKAPVSFKTGLQDLTVMSTMEAELLAAALTMKEAVFCSNMMTELGFGQQFGQVPLYINNTATLHVIGNQAYSSRTKHIALLFFCVRELVKEGAITIH 500          
BLAST of mRNA_H-elongata_contig56473.13096.1 vs. uniprot
Match: A0A6H5KMK0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KMK0_9PHAE)

HSP 1 Score: 236 bits (601), Expect = 1.000e-74
Identity = 113/188 (60.11%), Postives = 141/188 (75.00%), Query Frame = 1
Query:  226 VTRFDILYAVNQLARTMSKPAKAYLGATKHLFRYLAISADFSITYKQGGFSLAAFSDVNWGNDPDNGRSK*SYIVMLANAPVSFKVGLQGLTTQSMMEAELVVAALTMKEAVFCSNVILKLGFDESFGSVPLYIDSTSALHVAGNRTYSPRAMHIALRYFFVQGLVEDGKISIHYVKAEDQLADLGTK 789
            V R+DI+YA   LAR M+KP+K +    K   RYLA + DFSITYK+GGF LA FSD NW N+PDNG+S  SY+ MLANAP+SF+ GLQGLT  S MEAELV +AL MKEAVFCSN++ +LGF + F  +P+Y D+T+ LH  GNR++S R  HIALR+FF++ LV +GKISIHY   ED LA +GTK
Sbjct:    6 VLRYDIMYATGHLARPMAKPSKVHTVTAKQTLRYLAGTIDFSITYKKGGFKLATFSDSNWANNPDNGKSTSSYLTMLANAPMSFRSGLQGLTAMSTMEAELVASALAMKEAVFCSNMMTELGFGKEFAQLPVYCDNTATLHALGNRSFSSRTKHIALRFFFIRELVTEGKISIHYAPTEDNLAHIGTK 193          
BLAST of mRNA_H-elongata_contig56473.13096.1 vs. uniprot
Match: A0A6H5JME8_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JME8_9PHAE)

HSP 1 Score: 245 bits (626), Expect = 2.250e-73
Identity = 117/188 (62.23%), Postives = 147/188 (78.19%), Query Frame = 1
Query:  226 VTRFDILYAVNQLARTMSKPAKAYLGATKHLFRYLAISADFSITYKQGGFSLAAFSDVNWGNDPDNGRSK*SYIVMLANAPVSFKVGLQGLTTQSMMEAELVVAALTMKEAVFCSNVILKLGFDESFGSVPLYIDSTSALHVAGNRTYSPRAMHIALRYFFVQGLVEDGKISIHYVKAEDQLADLGTK 789
            V R+DI+YA  QLAR+M+KP+K ++ A KH  RYLA + DFSITYK+GGF LA FSD NW N+PDNG+S  SY+ MLANAP+SF+ GLQGLT  S MEAELV +AL MKEAVFCSN++ +LG  + F  +P+Y D+T+ LH  GNR++S R  HIALR+FF++ LV +GKISIHYV  ED LAD+GTK
Sbjct:  452 VLRYDIMYATGQLARSMAKPSKVHMVAAKHTLRYLAGTIDFSITYKKGGFKLATFSDSNWANNPDNGKSTSSYLTMLANAPMSFRSGLQGLTAMSTMEAELVASALAMKEAVFCSNMMTELGSGKEFAQLPVYCDNTATLHALGNRSFSSRTKHIALRFFFIRELVTEGKISIHYVPTEDNLADIGTK 639          
BLAST of mRNA_H-elongata_contig56473.13096.1 vs. uniprot
Match: A0A6H5KBU1_9PHAE (CCHC-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KBU1_9PHAE)

HSP 1 Score: 239 bits (609), Expect = 6.380e-69
Identity = 112/188 (59.57%), Postives = 147/188 (78.19%), Query Frame = 1
Query:  226 VTRFDILYAVNQLARTMSKPAKAYLGATKHLFRYLAISADFSITYKQGGFSLAAFSDVNWGNDPDNGRSK*SYIVMLANAPVSFKVGLQGLTTQSMMEAELVVAALTMKEAVFCSNVILKLGFDESFGSVPLYIDSTSALHVAGNRTYSPRAMHIALRYFFVQGLVEDGKISIHYVKAEDQLADLGTK 789
            +TR+DI+Y  +QLAR MS P+K ++GA KHL RYL+ S DFSITYK+GGF L A SD NWGN+PDN +S  SYI+M++ APVSFK GLQ LT  S +EAELV AAL MKE +FC+N++ +LGF   F S PLYI+ T+ LHV GN+T+S R  H+ALR+F+++ +V++G+ISIHY+  ED LAD+GTK
Sbjct:  485 ITRYDIMYCASQLARAMSNPSKIHMGAAKHLLRYLSGSRDFSITYKRGGFDLTALSDANWGNNPDNRKSMSSYIMMMSKAPVSFKFGLQSLTAMSTLEAELVAAALAMKETIFCTNMMKELGFGSEFRSAPLYIN-TATLHVIGNQTFSGRTKHVALRFFYIREIVKEGRISIHYIPTEDNLADIGTK 671          
BLAST of mRNA_H-elongata_contig56473.13096.1 vs. uniprot
Match: A0A6H5JG39_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JG39_9PHAE)

HSP 1 Score: 232 bits (592), Expect = 8.550e-68
Identity = 131/313 (41.85%), Postives = 179/313 (57.19%), Query Frame = 1
Query:    4 YEDETGFVILTLYVDDILFLSASKTLINKLKKQLMDQFEMSDISDVSRILGMNVTRDREKRTITISQKDYTEDMVTRF---------------------------------------------------DILYAVNQLARTMSKPAKAYLGATKHLFRYLAISADFSITYKQGGFSLAAFSDVNWGNDPDNGRSK*SYIVMLANAPVSFKVGLQGLTTQSMMEAELVVAALTMKEAVFCSNVILKLGFDESFGSVPLYIDSTSALHVAGNRTYSPRAMHIALRYFFVQGLVEDGKISIHYVKAEDQLADLGTK 789
            Y+ +   + LTL VDD+L    +                   +S  S I GM + RDRE+ T++IS++ Y++ ++ RF                                                   DI+YA +QLAR M+KP+K ++GA K  FRYLA +  F I YK+GGF L AF+D NWGN+PDNG+S  S++ ML +AP++FK GLQ LTTQS ME ELV AAL +KEAVFCSN++ +LGF +    VPLY D+T+ LH  GNR+YS    HIALR+FF++ LV +G+I+IHYV A+   AD+GTK
Sbjct:  405 YDHDGSQMYLTLSVDDLLLAGNNS----------------DALSIASLISGMEIKRDRERGTLSISREAYSKSILDRFGMSACKPTSTPGLGPGPSNVQPEETLLNQEETRRYQGIVGCLIYLSQILRYDIMYATSQLARPMAKPSKNHMGAAKRTFRYLAGTTYFKIPYKRGGFKLTAFTDSNWGNNPDNGKSTSSHLTMLCDAPMAFKSGLQSLTTQSTMEVELVAAALAIKEAVFCSNILTELGFGKELAQVPLYGDNTATLHSLGNRSYSSTTKHIALRFFFIRELVSEGRIAIHYVPADSNPADIGTK 701          
BLAST of mRNA_H-elongata_contig56473.13096.1 vs. uniprot
Match: A0A6H5L6R7_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L6R7_9PHAE)

HSP 1 Score: 229 bits (583), Expect = 2.730e-66
Identity = 120/275 (43.64%), Postives = 176/275 (64.00%), Query Frame = 1
Query:    1 VYEDETGFVILTLYVDDILFL-SASKTLINKLKKQLMDQFEMSDISDVSRI-LGMNVTRDREKRTITISQKDYTED----------MVTRFDILYAVNQLARTMSKPAKAYLGATKHLFRYLAISADFSITYKQGGFSLAAFSDVNWGNDPDNGRSK*SYIVMLANAPVSFKVGLQGLTTQSMMEAELVVAALTMKEAVFCSNVILKLGFDESFGSVPLYIDSTSALHVAGNRTYSPRAMHIALRYFFVQGLVEDGKISIHYVKAEDQLADLGTK 789
            +Y+     V+LTLYVDD+L +   +          ++D+F M     +S    G  ++  + + T+  ++                 VTR+DI+Y  +Q AR MS P+K ++GA KHL RYL+ S DFSITYK+GGF L A S+ N G++ DNG+S  SYI+M++ AP S K GLQ LT  S +EAELV +AL MKE +FC+N++ +LGF   F S PL+IDST+ L+V GN+T+S    H+ALR+F+++ +V++G+ISIHY+  ED LAD+GT+
Sbjct:  485 IYDHNNTVVVLTLYVDDLLIIRGGAHHQPGNYTTSILDRFGMGSCKPLSTAGFGPELSVKQPEETLLNAEGKQRYQAIIGSVMYLAQVTRYDIMYCASQFARAMSNPSKIHMGAAKHLLRYLSGSRDFSITYKRGGFDLTASSNANGGHNTDNGKSMSSYIMMMSTAPASLKSGLQSLTAMSTVEAELVASALAMKEVIFCTNMMKELGFGSEFSSAPLFIDSTATLNVIGNQTFSGHTKHMALRFFYIRKIVKEGRISIHYIPTEDNLADIGTE 759          
BLAST of mRNA_H-elongata_contig56473.13096.1 vs. uniprot
Match: A0A6H5KNV2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KNV2_9PHAE)

HSP 1 Score: 205 bits (522), Expect = 6.440e-62
Identity = 98/158 (62.03%), Postives = 122/158 (77.22%), Query Frame = 1
Query:  226 VTRFDILYAVNQLARTMSKPAKAYLGATKHLFRYLAISADFSITYKQGGFSLAAFSDVNWGNDPDNGRSK*SYIVMLANAPVSFKVGLQGLTTQSMMEAELVVAALTMKEAVFCSNVILKLGFDESFGSVPLYIDSTSALHVAGNRTYSPRAMHIALR 699
            V R+DI+YA  QLAR M+KP+K ++ A KH  RYLA + DFSITYK+GGF LA FSD NW N+PDNG+S  SY+ MLANAP+SF+ GLQGLT  S MEAELV +AL MKEAVFCSN++ +LGF + F  +P+Y D+T+ LH  GNR++S R  HIALR
Sbjct:  108 VLRYDIMYATGQLARPMAKPSKVHMVAAKHTLRYLAGTIDFSITYKKGGFKLATFSDSNWANNPDNGKSTSSYLTMLANAPMSFRSGLQGLTAMSTMEAELVASALAMKEAVFCSNMMTELGFGKEFAQLPVYCDNTATLHALGNRSFSSRTKHIALR 265          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig56473.13096.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5L5U2_9PHAE9.940e-8846.65Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5KNH5_9PHAE8.660e-8346.65Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5KJH6_9PHAE1.870e-7946.01Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5J6N1_9PHAE5.770e-7850.00Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5KMK0_9PHAE1.000e-7460.11Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JME8_9PHAE2.250e-7362.23Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5KBU1_9PHAE6.380e-6959.57CCHC-type domain-containing protein n=1 Tax=Ectoca... [more]
A0A6H5JG39_9PHAE8.550e-6841.85Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5L6R7_9PHAE2.730e-6643.64Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5KNV2_9PHAE6.440e-6262.03Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig56473contigH-elongata_contig56473:1460..2401 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeFungi
Seed ortholog score68.9
Seed ortholog evalue1.7e-09
Seed eggNOG ortholog37727.XP_002147152.1
EggNOG free text desc.Reverse transcriptase (RNA-dependent DNA polymerase)
EggNOG OGs20FR9@147545,38DPC@33154,3NUZ7@4751,3QNZW@4890,3SBAR@5042,COG2801@1,KOG0017@2759
COG Functional cat.L
Best tax levelEurotiales
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons2
Model size789
Cds size339
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig56473.13096.1prot_H-elongata_contig56473.13096.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig56473 1460..1798 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930919.0938249-CDS-H-elongata_contig56473:1459..17981622930919.0938249-CDS-H-elongata_contig56473:1459..1798Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig56473 1460..1798 -
1691679624.5979986-CDS-H-elongata_contig56473:1459..17981691679624.5979986-CDS-H-elongata_contig56473:1459..1798Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig56473 1460..1798 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930919.1107602-UTR-H-elongata_contig56473:1798..20231622930919.1107602-UTR-H-elongata_contig56473:1798..2023Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig56473 1799..2023 -
1691679624.6085362-UTR-H-elongata_contig56473:1798..20231691679624.6085362-UTR-H-elongata_contig56473:1798..2023Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig56473 1799..2023 -
1622930919.126246-UTR-H-elongata_contig56473:2176..24011622930919.126246-UTR-H-elongata_contig56473:2176..2401Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig56473 2177..2401 -
1691679624.616781-UTR-H-elongata_contig56473:2176..24011691679624.616781-UTR-H-elongata_contig56473:2176..2401Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig56473 2177..2401 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig56473.13096.1

>prot_H-elongata_contig56473.13096.1 ID=prot_H-elongata_contig56473.13096.1|Name=mRNA_H-elongata_contig56473.13096.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=113bp
MLANAPVSFKVGLQGLTTQSMMEAELVVAALTMKEAVFCSNVILKLGFDE
SFGSVPLYIDSTSALHVAGNRTYSPRAMHIALRYFFVQGLVEDGKISIHY
VKAEDQLADLGTK
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mRNA from alignment at H-elongata_contig56473:1460..2401-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig56473.13096.1 ID=mRNA_H-elongata_contig56473.13096.1|Name=mRNA_H-elongata_contig56473.13096.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=942bp|location=Sequence derived from alignment at H-elongata_contig56473:1460..2401- (Himanthalia elongata Himel1 dioecious)
GTTTACGAGGACGAGACTGGCTTCGTTATCCTGACGCTCTACGTGGATGA CATCTTGTTCCTTAGCGCCAGCAAGACTTTGATCAACAAGCTCAAGAAGC AGCTGATGGACCAGTTCGAGATGTCCGACATAAGCGACGTGTCGAGAATC CTCGGCATGAACGTCACCCGCGACCGGGAGAAGAGGACTATCACCATTAG CCAGAAGGATTACACGGAAGACATGGTGCAGCGCTACGGTATGAAAAGCT GCAACCCCGCGTACACCCCCGGAGTAGGGCCGGAGCTGTCTATAAACCGA CCGGAGGAGAAGCTGCTGAACAAGGAGGAGAAGCGGCGCTACCAGGAAAC CACTGGAGCCGTGATGTACCTTGCACAGGTCACCCGCTTCGACATTCTCT ACGCGGTCAATCAGCTGGCGAGGACCATGTCCAAGCCCGCGAAAGCTTAC CTGGGGGCGACCAAGCACCTGTTTCGCTACTTGGCCATATCCGCAGACTT CTCCATCACCTACAAGCAAGGCGGTTTTAGTCTTGCTGCCTTCTCAGATG TCAACTGGGGCAACGACCCAGACAACGGCAGATCTAAGTAATCGTACATC GTGATGCTGGCCAACGCCCCGGTCAGCTTCAAAGTGGGACTGCAAGGGCT GACCACACAGTCCATGATGGAGGCAGAGCTCGTGGTGGCAGCTCTGACAA TGAAGGAGGCGGTGTTCTGCTCGAACGTGATTCTGAAGCTTGGCTTCGAT GAGAGCTTCGGCAGCGTACCGCTGTACATCGACAGCACGTCGGCACTGCA CGTCGCCGGCAACCGCACCTACAGCCCTCGTGCAATGCACATCGCACTGA GGTATTTTTTCGTGCAAGGGTTGGTAGAGGATGGCAAGATCAGCATCCAC TACGTCAAGGCCGAGGATCAGCTGGCGGACTTGGGAACCAAG
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Coding sequence (CDS) from alignment at H-elongata_contig56473:1460..2401-

>mRNA_H-elongata_contig56473.13096.1 ID=mRNA_H-elongata_contig56473.13096.1|Name=mRNA_H-elongata_contig56473.13096.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=678bp|location=Sequence derived from alignment at H-elongata_contig56473:1460..2401- (Himanthalia elongata Himel1 dioecious)
ATGCTGGCCAACGCCCCGGTCAGCTTCAAAGTGGGACTGCAAGGGCTGAC
CACACAGTCCATGATGGAGGCAGAGCTCGTGGTGGCAGCTCTGACAATGA
AGGAGGCGGTGTTCTGCTCGAACGTGATTCTGAAGCTTGGCTTCGATGAG
AGCTTCGGCAGCGTACCGCTGTACATCGACAGCACGTCGGCACTGCACGT
CGCCGGCAACCGCACCTACAGCCCTCGTGCAATGCACATCGCACTGAGGT
ATTTTTTCGTGCAAGGGTTGGTAGAGGATGGCAAGATCAGCATCCACTAC
GTCAAGGCCGAGGATCAGCTGGCGGACTTGGGAACCAAGATGCTGGCCAA
CGCCCCGGTCAGCTTCAAAGTGGGACTGCAAGGGCTGACCACACAGTCCA
TGATGGAGGCAGAGCTCGTGGTGGCAGCTCTGACAATGAAGGAGGCGGTG
TTCTGCTCGAACGTGATTCTGAAGCTTGGCTTCGATGAGAGCTTCGGCAG
CGTACCGCTGTACATCGACAGCACGTCGGCACTGCACGTCGCCGGCAACC
GCACCTACAGCCCTCGTGCAATGCACATCGCACTGAGGTATTTTTTCGTG
CAAGGGTTGGTAGAGGATGGCAAGATCAGCATCCACTACGTCAAGGCCGA
GGATCAGCTGGCGGACTTGGGAACCAAG
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