mRNA_H-elongata_contig56345.13083.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig56345.13083.1
Unique NamemRNA_H-elongata_contig56345.13083.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig56345.13083.1 vs. uniprot
Match: A0A6H5KSG8_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KSG8_9PHAE)

HSP 1 Score: 219 bits (559), Expect = 1.850e-61
Identity = 127/337 (37.69%), Postives = 187/337 (55.49%), Query Frame = 1
Query:    4 SGEVFLLQRAVYGLRQARRQWNLRLSRVLMQKPGMEQSKAHPCVYRKVVDGEVTLIVCVYVDDLVVTAMDKGTFDAFYAQLKGERPVNDMGNLSWYLGCAFERDKMEGVVRMTQTAFVDSLVDRFDIHYETQTPASV-------ETDEKEGDWPFKQAVGGLLWSSGMTRPGIVSAVRAVARHAHNPAARHWKAVRNFK--------------------LSLFPDADYADRCNDRRSVSGVAVMLGNTAVNASSTTQHCVTLSTSEAEYVA------------------------------------MALTEKPQGSHRSKHIDVRFHFLQGLVRLG 825
            S ++   +RA+YGL+Q+ RQW    +  L++  G EQ KA PCV+RK+VD  V +I+ +YVDD++V   D+   +   A L  + P  ++G   W+ GCA ERD   G +R++QTA++DS+V+RFD+   ++ PA+          DE+ G+WP ++A+G ++W S  +RP +  AVRAVARHAH PA RHW A++                       L+++ DA YAD   DRRSVSG+A  +G T V+  S TQ  V+LS++EAEY+A                                    +AL + P  S R+KHIDVR+HF++GL R G
Sbjct:  875 SHKIAKAERAIYGLKQSGRQWGYHAADTLVEN-GFEQCKADPCVFRKMVDEVVVMIIVIYVDDILVAGSDEDC-EELLASLNKKFPTKNLGECQWFDGCAIERDVEAGTLRISQTAYIDSMVERFDVKSTSRIPATPGADLGPKREDEEGGEWPVREAIGSMMWVSTFSRPDVSFAVRAVARHAHAPAKRHWDAIQKILGYLKGTRDLGITYQRGSGLGLAVYVDASYADT-EDRRSVSGLATTVGGTVVSHGSKTQSIVSLSSTEAEYIAAGEGVKEALFVRAVLSFVAPETSGSSIKVLEDNQGAIALVQNPLSSGRTKHIDVRYHFIRGLFRSG 1208          
BLAST of mRNA_H-elongata_contig56345.13083.1 vs. uniprot
Match: A0A6H5JZQ8_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZQ8_9PHAE)

HSP 1 Score: 219 bits (559), Expect = 2.050e-61
Identity = 127/337 (37.69%), Postives = 187/337 (55.49%), Query Frame = 1
Query:    4 SGEVFLLQRAVYGLRQARRQWNLRLSRVLMQKPGMEQSKAHPCVYRKVVDGEVTLIVCVYVDDLVVTAMDKGTFDAFYAQLKGERPVNDMGNLSWYLGCAFERDKMEGVVRMTQTAFVDSLVDRFDIHYETQTPASV-------ETDEKEGDWPFKQAVGGLLWSSGMTRPGIVSAVRAVARHAHNPAARHWKAVRNFK--------------------LSLFPDADYADRCNDRRSVSGVAVMLGNTAVNASSTTQHCVTLSTSEAEYVA------------------------------------MALTEKPQGSHRSKHIDVRFHFLQGLVRLG 825
            S ++   +RA+YGL+Q+ RQW    +  L++  G EQ KA PCV+RK+VD  V +I+ +YVDD++V   D+   +   A L  + P  ++G   W+ GCA ERD   G +R++QTA++DS+V+RFD+   ++ PA+          DE+ G+WP ++A+G ++W S  +RP +  AVRAVARHAH PA RHW A++                       L+++ DA YAD   DRRSVSG+A  +G T V+  S TQ  V+LS++EAEY+A                                    +AL + P  S R+KHIDVR+HF++GL R G
Sbjct: 1254 SHKIAKAERAIYGLKQSGRQWGYHAADTLVEN-GFEQCKADPCVFRKMVDEVVVMIIVIYVDDILVAGSDEDC-EELLASLNKKFPTKNLGECQWFDGCAIERDVEAGTLRISQTAYIDSMVERFDVKSTSRIPATPGADLGPKREDEEGGEWPVREAIGSMMWVSTFSRPDVSFAVRAVARHAHAPAKRHWDAIQKILGYLKGTRDLGITYQRGSGLGLAVYVDASYADT-EDRRSVSGLATTVGGTVVSHGSKTQSIVSLSSTEAEYIAAGEGVKEALFVRAVLSFVAPETSGSSIKVLEDNQGAIALVQNPLSSGRTKHIDVRYHFIRGLFRSG 1587          
BLAST of mRNA_H-elongata_contig56345.13083.1 vs. uniprot
Match: A0A6H5JN00_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JN00_9PHAE)

HSP 1 Score: 219 bits (559), Expect = 2.070e-61
Identity = 127/337 (37.69%), Postives = 187/337 (55.49%), Query Frame = 1
Query:    4 SGEVFLLQRAVYGLRQARRQWNLRLSRVLMQKPGMEQSKAHPCVYRKVVDGEVTLIVCVYVDDLVVTAMDKGTFDAFYAQLKGERPVNDMGNLSWYLGCAFERDKMEGVVRMTQTAFVDSLVDRFDIHYETQTPASV-------ETDEKEGDWPFKQAVGGLLWSSGMTRPGIVSAVRAVARHAHNPAARHWKAVRNFK--------------------LSLFPDADYADRCNDRRSVSGVAVMLGNTAVNASSTTQHCVTLSTSEAEYVA------------------------------------MALTEKPQGSHRSKHIDVRFHFLQGLVRLG 825
            S ++   +RA+YGL+Q+ RQW    +  L++  G EQ KA PCV+RK+VD  V +I+ +YVDD++V   D+   +   A L  + P  ++G   W+ GCA ERD   G +R++QTA++DS+V+RFD+   ++ PA+          DE+ G+WP ++A+G ++W S  +RP +  AVRAVARHAH PA RHW A++                       L+++ DA YAD   DRRSVSG+A  +G T V+  S TQ  V+LS++EAEY+A                                    +AL + P  S R+KHIDVR+HF++GL R G
Sbjct: 1274 SHKIAKAERAIYGLKQSGRQWGYHAADTLVEN-GFEQCKADPCVFRKMVDQVVVMIIVIYVDDILVAGSDEDC-EELLASLNKKFPTKNLGECQWFDGCAIERDVEAGTLRISQTAYIDSMVERFDVKSTSRIPATPGADLGPKREDEEGGEWPVREAIGSMMWVSTFSRPDVSFAVRAVARHAHAPAKRHWDAIQKILGYLKGTRDLGITYQRGSGLGLAVYVDASYADT-EDRRSVSGLATTVGGTVVSHGSKTQSIVSLSSTEAEYIAAGEGVKEALFVRAVLSFVAPETSGSSIKVLEDNQGAIALVQNPLSSGRTKHIDVRYHFIRGLFRSG 1607          
BLAST of mRNA_H-elongata_contig56345.13083.1 vs. uniprot
Match: A0A6H5KF60_9PHAE (Uncharacterized protein n=12 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KF60_9PHAE)

HSP 1 Score: 219 bits (559), Expect = 2.080e-61
Identity = 127/337 (37.69%), Postives = 187/337 (55.49%), Query Frame = 1
Query:    4 SGEVFLLQRAVYGLRQARRQWNLRLSRVLMQKPGMEQSKAHPCVYRKVVDGEVTLIVCVYVDDLVVTAMDKGTFDAFYAQLKGERPVNDMGNLSWYLGCAFERDKMEGVVRMTQTAFVDSLVDRFDIHYETQTPASV-------ETDEKEGDWPFKQAVGGLLWSSGMTRPGIVSAVRAVARHAHNPAARHWKAVRNFK--------------------LSLFPDADYADRCNDRRSVSGVAVMLGNTAVNASSTTQHCVTLSTSEAEYVA------------------------------------MALTEKPQGSHRSKHIDVRFHFLQGLVRLG 825
            S ++   +RA+YGL+Q+ RQW    +  L++  G EQ KA PCV+RK+VD  V +I+ +YVDD++V   D+   +   A L  + P  ++G   W+ GCA ERD   G +R++QTA++DS+V+RFD+   ++ PA+          DE+ G+WP ++A+G ++W S  +RP +  AVRAVARHAH PA RHW A++                       L+++ DA YAD   DRRSVSG+A  +G T V+  S TQ  V+LS++EAEY+A                                    +AL + P  S R+KHIDVR+HF++GL R G
Sbjct: 1417 SHKIAKAERAIYGLKQSGRQWGYHAADTLVEN-GFEQCKADPCVFRKMVDEVVVMIIVIYVDDILVAGSDEDC-EELLASLNKKFPTKNLGECQWFDGCAIERDVEAGTLRISQTAYIDSMVERFDVKSTSRIPATPGADLGPKREDEEGGEWPVREAIGSMMWVSTFSRPDVSFAVRAVARHAHAPAKRHWDAIQKILGYLKGTRDLGITYQRGSGLGLAVYVDASYADT-EDRRSVSGLATTVGGTVVSHGSKTQSIVSLSSTEAEYIAAGEGVKEALFVRAVLSFVAPETSGSSIKVLEDNQGAIALVQNPLSSGRTKHIDVRYHFIRGLFRSG 1750          
BLAST of mRNA_H-elongata_contig56345.13083.1 vs. uniprot
Match: A0A6H5JVD4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JVD4_9PHAE)

HSP 1 Score: 208 bits (530), Expect = 4.650e-61
Identity = 118/295 (40.00%), Postives = 170/295 (57.63%), Query Frame = 1
Query:   61 QWNLRLSRVLMQKPGMEQSKAHPCVYRKVVDGEVTLIVCVYVDDLVVTAMDKGTFDAFYAQLKGERPVNDMGNLSWYLGCAFERDKMEGVVRMTQTAFVDSLVDRFDIHYETQTPASV-------ETDEKEGDWPFKQAVGGLLWSSGMTRPGIVSAVRAVARHAHNPAARHWKAVRNFK--------------------LSLFPDADYADRCNDRRSVSGVAVMLGNTAVNASSTTQHCVTLSTSEAEYVAMALTEK-------------PQGSHRSKHIDVRFHFLQGLVRLG 825
            QW    +  L++  G EQ KA PCV+RK+VD  V +I+ +YVDD++V   D+   +   A L  + P  ++G   W+ GCA ERD   G +R++QTA++DS+V+RFD+   ++ PA+          DE+ G+WP ++A+G ++W S  +RP +  AVRAVARHAH PA RHW A++                       L+++ DA YAD   DRRSVSG+A  +G T V+  S TQ  V+LS++EAEY+A     K             P+   R+KHIDVRFHF++GL R G
Sbjct:  117 QWGYHAADTLVEN-GFEQCKADPCVFRKMVDEVVVMIIVIYVDDILVAGSDEDC-EELLASLNKKFPTKNLGECQWFDGCAIERDVEAGTLRISQTAYIDSMVERFDVQSTSRIPATPGADLGPQREDEEGGEWPVREAIGSMMWVSTFSRPDVSFAVRAVARHAHAPAKRHWDAIQKILGYLKGTRDLGITYQRGSGLGLAVYVDASYADT-EDRRSVSGLATTVGGTVVSHGSKTQSIVSLSSTEAEYIAAGEGVKESLFVRAVLSFVAPETRGRTKHIDVRFHFIRGLFRSG 408          
BLAST of mRNA_H-elongata_contig56345.13083.1 vs. uniprot
Match: A0A6H5JCG0_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JCG0_9PHAE)

HSP 1 Score: 207 bits (527), Expect = 1.330e-59
Identity = 128/337 (37.98%), Postives = 175/337 (51.93%), Query Frame = 1
Query:    4 SGEVFLLQRAVYGLRQARRQWNLRLSRVLMQKPGMEQSKAHPCVYRKVVDGEVTLIVCVYVDDLVVTAMDKGTFDAFYAQLKGERPVNDMGNLSWYLGCAFERDKMEGVVRMTQTAFVDSLVDRFDIHYETQTPASV-------ETDEKEGDWPFKQAVGGLLWSSGMTRPGIVSAVRAVARHAHNPAARHWKAV--------------------RNFKLSLFPDADYADRCNDRRSVSGVAVMLGNTAVNASSTTQHCVTLSTSEAEYVA------------------------------------MALTEKPQGSHRSKHIDVRFHFLQGLVRLG 825
            S +V   +RA+YGL+Q+ RQW    +  L++  G EQ KA PCV+RK+ D  V        D ++V   D    +   A L    P  D+G   W+ GCA ERD   G +R++QTA++DS+V+RFD+   +  PAS          DE  G+WP ++A+G ++W S  +RP I  AVRAVARHAH PA RHWKA+                        L+++ DA YAD   DRRSVSG+A  +G T ++  S TQ  V+LS++EAEY+A                                    MAL + P  S RSKHIDVR+HF++GL R G
Sbjct:  138 SHKVVKAERAIYGLKQSGRQWGYHAADTLVEN-GFEQCKADPCVFRKMKDDVVXXXXXXXXDXILVAGSDDDCKELL-ASLNKAFPTKDLGECVWFDGCAVERDLEAGTLRISQTAYIDSIVNRFDVQSTSSIPASPGVDIGPKRDDESGGEWPVREAIGSMMWVSTFSRPDISFAVRAVARHAHAPAERHWKAIVKILAYLKETRDLGITYERGSGLGLAVYVDASYAD-AEDRRSVSGLATTVGGTVISHGSKTQAIVSLSSTEAEYIAAGEGVKEALFVRAVLSFIAPETSGSSIQVLEDNQGAMALVQNPLSSARSKHIDVRYHFIRGLFRSG 471          
BLAST of mRNA_H-elongata_contig56345.13083.1 vs. uniprot
Match: A0A6H5JC10_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JC10_9PHAE)

HSP 1 Score: 211 bits (537), Expect = 1.830e-59
Identity = 130/343 (37.90%), Postives = 183/343 (53.35%), Query Frame = 1
Query:    4 SGEVFLLQRAVYGLRQARRQWNLRLSRVLMQKPGMEQSKAHPCVYRKVVDGEVTLIVCVYVDDLVVTAMDKGTFDAFYAQLKGERPVNDMGNLSWYLGCAFERDKMEGVVRMTQTAFVDSLVDRFDIHYETQTPASV-------ETDEKEGDWPFKQAVGGLLWSSGMTRPGIVSAVRAVARHAHNPAARHWKAVRNFK--------------------LSLFPDADYADRCNDRRSVSGVAVMLGNTAVNASSTTQHCVTLSTS-------EAEYV-----------------------------------AMALTEKPQGSHRSKHIDVRFHFLQGLVRLG 825
            S E+   +RA+YGL+Q+ RQW    +  L++  G EQ KA PCV+RK+VD  V +I+ +YVDD++V   D+   +   A L  + P  ++    W+ GCA ERD   G +R++QTA++DS+V RFD+   ++ PAS          DEK G+WP ++A+G ++W S  +RP +  AVRAVARHAH PA RHW A++                       L+++ DA YAD   DRRSVSG+A  +G T V+  S TQ  V+LS++       EAEY                                    AMAL + P  S R+KHIDVRFHF++ L R G
Sbjct:  429 SHEIAKAERAIYGLKQSGRQWGYHAADTLVEN-GFEQCKADPCVFRKMVDEVVVMIIVIYVDDILVAGSDEDC-EELLASLSKKFPTKNLEECQWFDGCAIERDVETGTLRISQTAYIDSMVKRFDVQSTSRIPASPGVDLGPKRDDEKGGEWPVREAIGSIMWVSTFSRPDVSFAVRAVARHAHAPAKRHWDAIQKILGYLKGTRDLGITYQRGSGLGLAVYVDASYADT-EDRRSVSGLATTVGGTVVSHGSKTQSIVSLSSTXXXXXXTEAEYFTAGECVKEALFVRAVLSFVAPETSGSSIQVLDNQGAMALVQNPLSSGRTKHIDVRFHFIRVLFRSG 768          
BLAST of mRNA_H-elongata_contig56345.13083.1 vs. uniprot
Match: A0A6H5JQN6_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JQN6_9PHAE)

HSP 1 Score: 210 bits (535), Expect = 5.990e-59
Identity = 125/337 (37.09%), Postives = 183/337 (54.30%), Query Frame = 1
Query:    4 SGEVFLLQRAVYGLRQARRQWNLRLSRVLMQKPGMEQSKAHPCVYRKVVDGEVTLIVCVYVDDLVVTAMDKGTFDAFYAQLKGERPVNDMGNLSWYLGCAFERDKMEGVVRMTQTAFVDSLVDRFDIHYETQTPASV-------ETDEKEGDWPFKQAVGGLLWSSGMTRPGIVSAVRAVARHAHNPAARHWKAVRNFK--------------------LSLFPDADYADRCNDRRSVSGVAVMLGNTAVNASSTTQHCVTLSTSEAEYVA------------------------------------MALTEKPQGSHRSKHIDVRFHFLQGLVRLG 825
            S ++   +RA+YGL+Q+ RQW    +  L++  G EQ KA PCV+RK+VD  V +I+ +YVDD++V   D+   +   A L  + P  ++G   W+ GCA ERD   G +R++QTA++DS+V+RFD+   ++ PA+          D+K G+WP ++AVG ++W S  +RP +  AVRAVARHAH PA RHW A++                       L+++ DA YAD   DRRSVS +A  +G T V+  S  +  V+LS++EAEY+A                                    +AL + P  S   KHIDVRFHF++GL R G
Sbjct:  466 SHKIAKAERAIYGLKQSGRQWGYHAADTLVEN-GFEQCKADPCVFRKMVDEVVVMIIVIYVDDILVAGSDEDC-EELLASLNKKFPTKNLGECQWFDGCAIERDVDAGTLRISQTAYIDSMVERFDVKSTSRIPATPGADLGPKREDDKGGEWPVREAVGSMMWVSTFSRPDVSFAVRAVARHAHAPAKRHWDAIQKILGYLKGTRDLGITYQRGSGLGLAVYVDARYADT-EDRRSVSRLATTVGGTVVSHGSKARSIVSLSSTEAEYIAAGEGVKEALFVRAVLSFVAPETRGSSIQVLEDNQGAIALVQNPLSSGGMKHIDVRFHFIRGLFRSG 799          
BLAST of mRNA_H-elongata_contig56345.13083.1 vs. uniprot
Match: A0A6H5L060_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L060_9PHAE)

HSP 1 Score: 209 bits (533), Expect = 5.890e-58
Identity = 123/330 (37.27%), Postives = 179/330 (54.24%), Query Frame = 1
Query:   25 QRAVYGLRQARRQWNLRLSRVLMQKPGMEQSKAHPCVYRKVVDGEVTLIVCVYVDDLVVTAMDKGTFDAFYAQLKGERPVNDMGNLSWYLGCAFERDKMEGVVRMTQTAFVDSLVDRFDIHYETQTPASV-------ETDEKEGDWPFKQAVGGLLWSSGMTRPGIVSAVRAVARHAHNPAARHWKAVRN--------------------FKLSLFPDADYADRCNDRRSVSGVAVMLGNTAVNASSTTQHCVTLSTSEAEYVA------------------------------------MALTEKPQGSHRSKHIDVRFHFLQGLVRLG 825
            +RA+YGL+Q+ RQW    +  L++  G EQ KA PCV+RK+VD    +I+ +YVDD++V   D+   +   A L  + P  ++G   W+ GCA ERD   G +R++QTA++ S+V RFD+   ++ PA+          DE+ G+WP ++A+G ++W S  + P +  AVRAVARHAH PA RHW A++                       L+++ DA YAD   DRRSVSG+A  +G T V+  S TQ  V+LS++EAEY+A                                    +AL + P  S R+KHIDV FHF++GL R G
Sbjct:  911 ERAIYGLKQSGRQWGYHAADTLVEN-GFEQCKADPCVFRKMVDEVAVMIIVIYVDDILVAGSDEDC-EELLASLNKKFPTKNLGECQWFDGCAIERDVKGGTLRISQTAYIGSMVKRFDVQSTSRIPATPGVDLVPKREDEEGGEWPRREAIGSMMWVSTFSLPDVSFAVRAVARHAHAPAKRHWDAIQKTLGYLKETRDLGIAYQRGSGLGLAMYVDASYADT-EDRRSVSGLATTVGGTVVSHGSKTQSIVSLSSTEAEYIAAGEGVKEALFVRAVLSFVAPETSGSSIQVLEDNQGAIALVQNPLSSGRTKHIDVTFHFIRGLFRSG 1237          
BLAST of mRNA_H-elongata_contig56345.13083.1 vs. uniprot
Match: A0A6H5JSK5_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JSK5_9PHAE)

HSP 1 Score: 205 bits (522), Expect = 6.440e-57
Identity = 123/337 (36.50%), Postives = 180/337 (53.41%), Query Frame = 1
Query:    4 SGEVFLLQRAVYGLRQARRQWNLRLSRVLMQKPGMEQSKAHPCVYRKVVDGEVTLIVCVYVDDLVVTAMDKGTFDAFYAQLKGERPVNDMGNLSWYLGCAFERDKMEGVVRMTQTAFVDSLVDRFDIHYETQTPASV-------ETDEKEGDWPFKQAVGGLLWSSGMTRPGIVSAVRAVARHAHNPAARHWKAVRNFK--------------------LSLFPDADYADRCNDRRSVSGVAVMLGNTAVNASSTTQHCVTLSTSEAEYVA------------------------------------MALTEKPQGSHRSKHIDVRFHFLQGLVRLG 825
            S ++   +RA+YGL+Q+ RQW   ++  L++  G EQ KA PCV+ K+V+  V LI+ +YVDD++V   D+   +   A L  + P  ++G   W  GCA ERD   G   ++QTA +DS++ RFD+    + PAS          DEK G+WP ++A+G ++W S  +RP +  AVRAVARHAH PA RHW A++                       L+++ DA YAD   D+ S+SG+A  +G T V+  S TQ  V+LS++EAEY+A                                    +AL + P  S R+KHIDVR+HF++GL R G
Sbjct:  471 SHKIVKAERAIYGLKQSGRQWGYHVADTLVEN-GFEQCKADPCVFCKMVNEVVVLIIVIYVDDILVAGSDEDC-EELLASLNKKFPTKNLGEREWSDGCAIERDVQAGTFHISQTANIDSMMKRFDVQSTFRIPASPGVDLGPKRDDEKGGEWPVREAIGSMMWVSTFSRPDVSFAVRAVARHAHAPAKRHWDAIQKILGYLKGTRDLGITYQRGSGLGLAVYVDASYADT-EDKHSLSGLATTVGGTVVSHGSKTQSIVSLSSTEAEYIAAGEGVKEALFVSAVLSLIAPETSGSSIQVFQDNQGAIALVQNPLSSGRTKHIDVRYHFIRGLFRSG 804          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig56345.13083.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KSG8_9PHAE1.850e-6137.69Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5JZQ8_9PHAE2.050e-6137.69Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JN00_9PHAE2.070e-6137.69Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KF60_9PHAE2.080e-6137.69Uncharacterized protein n=12 Tax=Ectocarpus sp. CC... [more]
A0A6H5JVD4_9PHAE4.650e-6140.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JCG0_9PHAE1.330e-5937.98Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5JC10_9PHAE1.830e-5937.90Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5JQN6_9PHAE5.990e-5937.09Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5L060_9PHAE5.890e-5837.27Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5JSK5_9PHAE6.440e-5736.50Integrase catalytic domain-containing protein n=1 ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig56345contigH-elongata_contig56345:2787..3802 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeMetazoa
Seed ortholog score138.7
Seed ortholog evalue4.2e-30
Seed eggNOG ortholog400682.PAC_15702290
EggNOG free text desc.Reverse transcriptase (RNA-dependent DNA polymerase)
EggNOG OGs38DPC@33154,3BS5J@33208,COG2801@1,KOG0017@2759
COG Functional cat.L
Best tax levelMetazoa
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons4
Model size828
Cds size828
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig56345.13083.1prot_H-elongata_contig56345.13083.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig56345 2787..3802 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930917.5903783-CDS-H-elongata_contig56345:2786..28761622930917.5903783-CDS-H-elongata_contig56345:2786..2876Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig56345 2787..2876 -
1691679624.0454996-CDS-H-elongata_contig56345:2786..28761691679624.0454996-CDS-H-elongata_contig56345:2786..2876Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig56345 2787..2876 -
1622930917.6295147-CDS-H-elongata_contig56345:2984..31541622930917.6295147-CDS-H-elongata_contig56345:2984..3154Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig56345 2985..3154 -
1691679624.058637-CDS-H-elongata_contig56345:2984..31541691679624.058637-CDS-H-elongata_contig56345:2984..3154Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig56345 2985..3154 -
1622930917.6499486-CDS-H-elongata_contig56345:3213..33651622930917.6499486-CDS-H-elongata_contig56345:3213..3365Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig56345 3214..3365 -
1691679624.072476-CDS-H-elongata_contig56345:3213..33651691679624.072476-CDS-H-elongata_contig56345:3213..3365Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig56345 3214..3365 -
1622930917.6713507-CDS-H-elongata_contig56345:3386..38021622930917.6713507-CDS-H-elongata_contig56345:3386..3802Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig56345 3387..3802 -
1691679624.081241-CDS-H-elongata_contig56345:3386..38021691679624.081241-CDS-H-elongata_contig56345:3386..3802Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig56345 3387..3802 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig56345.13083.1

>prot_H-elongata_contig56345.13083.1 ID=prot_H-elongata_contig56345.13083.1|Name=mRNA_H-elongata_contig56345.13083.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=276bp
MSGEVFLLQRAVYGLRQARRQWNLRLSRVLMQKPGMEQSKAHPCVYRKVV
DGEVTLIVCVYVDDLVVTAMDKGTFDAFYAQLKGERPVNDMGNLSWYLGC
AFERDKMEGVVRMTQTAFVDSLVDRFDIHYETQTPASVETDEKEGDWPFK
QAVGGLLWSSGMTRPGIVSAVRAVARHAHNPAARHWKAVRNFKLSLFPDA
DYADRCNDRRSVSGVAVMLGNTAVNASSTTQHCVTLSTSEAEYVAMALTE
KPQGSHRSKHIDVRFHFLQGLVRLG*
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mRNA from alignment at H-elongata_contig56345:2787..3802-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig56345.13083.1 ID=mRNA_H-elongata_contig56345.13083.1|Name=mRNA_H-elongata_contig56345.13083.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1016bp|location=Sequence derived from alignment at H-elongata_contig56345:2787..3802- (Himanthalia elongata Himel1 dioecious)
ATGAGCGGTGAAGTCTTTCTGCTGCAACGTGCAGTGTACGGACTTCGGCA GGCTCGTAGACAATGGAATTTGCGACTTAGTAGGGTGCTTATGCAGAAAC CTGGCATGGAGCAGAGTAAGGCTCACCCGTGTGTGTACCGGAAGGTGGTA GATGGGGAGGTAACCCTCATTGTATGTGTTTATGTTGACGACCTGGTCGT GACCGCAATGGATAAGGGGACATTCGATGCATTTTATGCGCAGTTAAAGG GGGAACGTCCTGTGAATGACATGGGCAATCTATCTTGGTACCTTGGGTGT GCATTCGAGCGTGACAAGATGGAGGGCGTTGTGAGAATGACGCAGACAGC GTTCGTAGATTCGCTGGTTGACCGTTTTGATATACACTATGAGACCCAAA CTCCCGCGTCCGTAGAGTTTGACCTTTGACCGAAGAGGACTGACGAGAAA GAAGGCGATTGGCCTTTCAAGCAGGCAGTTGGTGGTCTGTTGTGGAGCTC TGGGATGACGCGACCGGGTATAGTCAGTGCGGTGAGGGCAGTGGCCCGAC ATGCCCACAATCCGGCGGCGCGGCATTGGAAGGCAGTTCGTAAGATAATT GCCTACCTCAAGGCAACCAAGGATCTGGGGATTGTGTTCCGACGGGAGGG AACTTCAAGTTGTCGTTGTTCCCTGACGCGGATTACGCTGACAGGTGTAA CGACAGACGGTCGGTTTCAGGTGTTGCGGTTATGCTCGGAAATACAGCTG TGAATGCAAGTAGCACGACGCAGCATTGCGTGACACTATCTACGAGTGAG GCGGAGTATGTGGCAATGGTTCATGGAGCAAAGACTGCTTTAGCAATAAA GACGGTGTTGGATTTTGTTCAGCCACATCTCAGTGGTAGTACCATTGATA TGTACGAAGATAACGAGGGGGCAAAGGCGTTGACTGAAAAACCACAAGGA TCTCACCGTAGCAAACATATTGACGTACGCTTTCATTTTTTGCAGGGGCT TGTGAGGTTAGGGTAG
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Coding sequence (CDS) from alignment at H-elongata_contig56345:2787..3802-

>mRNA_H-elongata_contig56345.13083.1 ID=mRNA_H-elongata_contig56345.13083.1|Name=mRNA_H-elongata_contig56345.13083.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1656bp|location=Sequence derived from alignment at H-elongata_contig56345:2787..3802- (Himanthalia elongata Himel1 dioecious)
ATGAGCGGTGAAGTCTTTCTGCTGCAACGTGCAGTGTACGGACTTCGGCA
GGCTCGTAGACAATGGAATTTGCGACTTAGTAGGGTGCTTATGCAGAAAC
CTGGCATGGAGCAGAGTAAGGCTCACCCGTGTGTGTACCGGAAGGTGGTA
GATGGGGAGGTAACCCTCATTGTATGTGTTTATGTTGACGACCTGGTCGT
GACCGCAATGGATAAGGGGACATTCGATGCATTTTATGCGCAGTTAAAGG
GGGAACGTCCTGTGAATGACATGGGCAATCTATCTTGGTACCTTGGGTGT
GCATTCGAGCGTGACAAGATGGAGGGCGTTGTGAGAATGACGCAGACAGC
GTTCGTAGATTCGCTGGTTGACCGTTTTGATATACACTATGAGACCCAAA
CTCCCGCGTCCGTAGAATGAGCGGTGAAGTCTTTCTGCTGCAACGTGCAG
TGTACGGACTTCGGCAGGCTCGTAGACAATGGAATTTGCGACTTAGTAGG
GTGCTTATGCAGAAACCTGGCATGGAGCAGAGTAAGGCTCACCCGTGTGT
GTACCGGAAGGTGGTAGATGGGGAGGTAACCCTCATTGTATGTGTTTATG
TTGACGACCTGGTCGTGACCGCAATGGATAAGGGGACATTCGATGCATTT
TATGCGCAGTTAAAGGGGGAACGTCCTGTGAATGACATGGGCAATCTATC
TTGGTACCTTGGGTGTGCATTCGAGCGTGACAAGATGGAGGGCGTTGTGA
GAATGACGCAGACAGCGTTCGTAGATTCGCTGGTTGACCGTTTTGATATA
CACTATGAGACCCAAACTCCCGCGTCCGTAGAGACTGACGAGAAAGAAGG
CGATTGGCCTTTCAAGCAGGCAGTTGGTGGTCTGTTGTGGAGCTCTGGGA
TGACGCGACCGGGTATAGTCAGTGCGGTGAGGGCAGTGGCCCGACATGCC
CACAATCCGGCGGCGCGGCATTGGAAGGCAGTTCGACTGACGAGAAAGAA
GGCGATTGGCCTTTCAAGCAGGCAGTTGGTGGTCTGTTGTGGAGCTCTGG
GATGACGCGACCGGGTATAGTCAGTGCGGTGAGGGCAGTGGCCCGACATG
CCCACAATCCGGCGGCGCGGCATTGGAAGGCAGTTCGGAACTTCAAGTTG
TCGTTGTTCCCTGACGCGGATTACGCTGACAGGTGTAACGACAGACGGTC
GGTTTCAGGTGTTGCGGTTATGCTCGGAAATACAGCTGTGAATGCAAGTA
GCACGACGCAGCATTGCGTGACACTATCTACGAGTGAGGCGGAGTATGTG
GCAATGGGAACTTCAAGTTGTCGTTGTTCCCTGACGCGGATTACGCTGAC
AGGTGTAACGACAGACGGTCGGTTTCAGGTGTTGCGGTTATGCTCGGAAA
TACAGCTGTGAATGCAAGTAGCACGACGCAGCATTGCGTGACACTATCTA
CGAGTGAGGCGGAGTATGTGGCAATGGCGTTGACTGAAAAACCACAAGGA
TCTCACCGTAGCAAACATATTGACGTACGCTTTCATTTTTTGCAGGGGCT
TGTGAGGTTAGGGTAGGCGTTGACTGAAAAACCACAAGGATCTCACCGTA
GCAAACATATTGACGTACGCTTTCATTTTTTGCAGGGGCTTGTGAGGTTA
GGGTAG
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