mRNA_H-elongata_contig56319.13077.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig56319.13077.1
Unique NamemRNA_H-elongata_contig56319.13077.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig56319.13077.1 vs. uniprot
Match: D8LTJ2_ECTSI (Rab7L, RAB family GTPase n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LTJ2_ECTSI)

HSP 1 Score: 208 bits (529), Expect = 1.680e-64
Identity = 100/111 (90.09%), Postives = 106/111 (95.50%), Query Frame = 1
Query:    1 VGKTSIMKRYVASDFSERRRPTIGADFMTKEIIAGDQPMLLQQIWDTAGQERFHGGSLGSGFFRGANAALLVYDVSCAVSFEQVAMWREELLVRLDVDPHDFPIVVIGNKV 333
            VGKTS+MKRY A DF++ RRPTIGADFMTKE++ GDQPMLLQ IWDTAGQERFHGGSLGSGFFRGANAALLVYDV+CAVSFEQVAMWREELLVRLDVDPHDFPIVVIGNKV
Sbjct:  164 VGKTSLMKRYAAGDFTDYRRPTIGADFMTKEVVEGDQPMLLQ-IWDTAGQERFHGGSLGSGFFRGANAALLVYDVACAVSFEQVAMWREELLVRLDVDPHDFPIVVIGNKV 273          
BLAST of mRNA_H-elongata_contig56319.13077.1 vs. uniprot
Match: A0A7S2RVV0_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2RVV0_9STRA)

HSP 1 Score: 140 bits (353), Expect = 5.010e-39
Identity = 68/111 (61.26%), Postives = 85/111 (76.58%), Query Frame = 1
Query:    1 VGKTSIMKRYVASDFSERRRPTIGADFMTKEIIAGDQPMLLQQIWDTAGQERFHGGSLGSGFFRGANAALLVYDVSCAVSFEQVAMWREELLVRLDVDPHDFPIVVIGNKV 333
            VGKTS+M+R+  + FSE RR T GADF +K +    Q ++LQ IWDTAGQERFH G+LG  F+RGA+AALLVYD + A SF+QV  WR E+L R+DV P DFP+VV+GNKV
Sbjct:   17 VGKTSLMRRFCKNSFSEARRATTGADFSSKRMSFAGQEVMLQ-IWDTAGQERFHHGTLGGAFYRGADAALLVYDATSASSFKQVENWRSEVLSRIDVAPGDFPLVVVGNKV 126          
BLAST of mRNA_H-elongata_contig56319.13077.1 vs. uniprot
Match: F0Y7J9_AURAN (Uncharacterized protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0Y7J9_AURAN)

HSP 1 Score: 130 bits (327), Expect = 8.040e-36
Identity = 63/111 (56.76%), Postives = 82/111 (73.87%), Query Frame = 1
Query:    1 VGKTSIMKRYVASDFSERRRPTIGADFMTKEIIAGDQPMLLQQIWDTAGQERFHGGSLGSGFFRGANAALLVYDVSCAVSFEQVAMWREELLVRLDVDPHDFPIVVIGNKV 333
            VGKTS++ ++V   F+  RR T GADF +K +  GD+ + L  IWDTAGQERFH G+LG  F+RGA+AALLVYD +   +FEQ+ MWR ELL R+D  P +FP+VV+GNKV
Sbjct:   21 VGKTSLLMQFVHGKFTPARRVTTGADFASKVLHLGDREVRLV-IWDTAGQERFHHGTLGGAFYRGADAALLVYDTTDIRTFEQIEMWRRELLQRIDGPPEEFPVVVVGNKV 130          
BLAST of mRNA_H-elongata_contig56319.13077.1 vs. uniprot
Match: A0A0W0EL55_CANGB (GTP-binding protein YPT7 n=2 Tax=Candida glabrata TaxID=5478 RepID=A0A0W0EL55_CANGB)

HSP 1 Score: 125 bits (313), Expect = 8.860e-34
Identity = 58/112 (51.79%), Postives = 80/112 (71.43%), Query Frame = 1
Query:    1 VGKTSIMKRYVASDFSERRRPTIGADFMTKEIIAGDQPMLLQQIWDTAGQERFHGGSLGSGFFRGANAALLVYDVSCAVSFEQVAMWREELLVRLDVD-PHDFPIVVIGNKV 333
            VGKTS+M RYV   +S++ + TIGADF+TKE++  D  ++  Q+WDTAGQERF   SLG  F+RGA+  +LVYDV+ A SFE +  W++E LV  ++  P  FP V++GNKV
Sbjct:   19 VGKTSLMHRYVNDKYSQQYKATIGADFLTKEVVLDDDKVVTMQVWDTAGQERFQ--SLGVAFYRGADCCVLVYDVTNAKSFENIKSWKDEFLVHANISSPESFPFVILGNKV 128          
BLAST of mRNA_H-elongata_contig56319.13077.1 vs. uniprot
Match: A0A1E4TPK7_PACTA (Uncharacterized protein n=1 Tax=Pachysolen tannophilus NRRL Y-2460 TaxID=669874 RepID=A0A1E4TPK7_PACTA)

HSP 1 Score: 124 bits (310), Expect = 2.320e-33
Identity = 62/112 (55.36%), Postives = 84/112 (75.00%), Query Frame = 1
Query:    1 VGKTSIMKRYVASDFSERRRPTIGADFMTKEIIAGDQPMLLQQIWDTAGQERFHGGSLGSGFFRGANAALLVYDVSCAVSFEQVAMWREELLVRLDV-DPHDFPIVVIGNKV 333
            VGKTS+M+++V   FS + + TIGADF+TKE+I  D+ + +Q IWDTAGQERF   SLG  F+RGA+  +LVYDV+   SFE V+ WR+E LV+ ++ DP +FP VVIGNK+
Sbjct:   19 VGKTSLMQQFVNGKFSHQYKATIGADFLTKELIIDDKNVTMQ-IWDTAGQERFQ--SLGVAFYRGADCCVLVYDVTNTKSFESVSSWRDEFLVQANIKDPENFPFVVIGNKI 127          
BLAST of mRNA_H-elongata_contig56319.13077.1 vs. uniprot
Match: R7QSY4_CHOCR (GTP-binding protein yptV5 n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QSY4_CHOCR)

HSP 1 Score: 123 bits (309), Expect = 3.370e-33
Identity = 63/112 (56.25%), Postives = 84/112 (75.00%), Query Frame = 1
Query:    1 VGKTSIMKRYVASDFSERRRPTIGADFMTKEIIAGDQPMLLQQIWDTAGQERFHGGSLGSGFFRGANAALLVYDVSCAVSFEQVAMWREELLVRLDV-DPHDFPIVVIGNKV 333
            VGKTS+M RYV ++FS++ + TIGADF TK++I  D+P+ LQ IWDTAGQER+   SLGS F+RGA+A +LVYD++ A SF+ +  WR+E L+     DP  FP VV+GNKV
Sbjct:   19 VGKTSLMDRYVCNEFSQQYKATIGADFYTKDVIIDDKPVGLQ-IWDTAGQERYQ--SLGSAFYRGADACVLVYDMTDARSFDALDSWRDEFLISAAPRDPDSFPFVVMGNKV 127          
BLAST of mRNA_H-elongata_contig56319.13077.1 vs. uniprot
Match: G8ZY45_TORDC (Uncharacterized protein n=6 Tax=Saccharomycetaceae TaxID=4893 RepID=G8ZY45_TORDC)

HSP 1 Score: 123 bits (309), Expect = 3.560e-33
Identity = 58/112 (51.79%), Postives = 78/112 (69.64%), Query Frame = 1
Query:    1 VGKTSIMKRYVASDFSERRRPTIGADFMTKEIIAGDQPMLLQQIWDTAGQERFHGGSLGSGFFRGANAALLVYDVSCAVSFEQVAMWREELLVRLDVD-PHDFPIVVIGNKV 333
            VGKTS+M RYV   +S++ + TIGADF+TKE++  D  +   Q+WDTAGQERF   SLG  F+RGA+  +LVYDV+   SFE +  WR+E LV  +V  P  FP V++GNK+
Sbjct:   19 VGKTSLMHRYVNDKYSQQYKATIGADFLTKEVVLDDDKVATMQVWDTAGQERFQ--SLGVAFYRGADCCVLVYDVTNVKSFENIKSWRDEFLVHANVSSPETFPFVILGNKI 128          
BLAST of mRNA_H-elongata_contig56319.13077.1 vs. uniprot
Match: A0A0C2XM57_AMAMK (Uncharacterized protein n=4 Tax=Agaricales TaxID=5338 RepID=A0A0C2XM57_AMAMK)

HSP 1 Score: 123 bits (308), Expect = 4.650e-33
Identity = 60/112 (53.57%), Postives = 82/112 (73.21%), Query Frame = 1
Query:    1 VGKTSIMKRYVASDFSERRRPTIGADFMTKEIIAGDQPMLLQQIWDTAGQERFHGGSLGSGFFRGANAALLVYDVSCAVSFEQVAMWREELLVRLDV-DPHDFPIVVIGNKV 333
            VGKTS+M +YV   FS + + TIGADF+TKE+I  D+P+ +Q +WDTAGQERF   SLG  F+RGA+  +LVYDV+ + SFE +  WR+E L++    DP +FP VV+GNK+
Sbjct:   16 VGKTSLMNQYVNKRFSNQYKATIGADFLTKEVIVDDRPVTMQ-LWDTAGQERFQ--SLGVAFYRGADCCVLVYDVNSSKSFETLDSWRDEFLIQASPHDPENFPFVVLGNKI 124          
BLAST of mRNA_H-elongata_contig56319.13077.1 vs. uniprot
Match: A0A6A6YDE9_9PEZI (Ras-related protein-like protein n=2 Tax=Mytilinidiaceae TaxID=281242 RepID=A0A6A6YDE9_9PEZI)

HSP 1 Score: 123 bits (308), Expect = 4.770e-33
Identity = 61/112 (54.46%), Postives = 79/112 (70.54%), Query Frame = 1
Query:    1 VGKTSIMKRYVASDFSERRRPTIGADFMTKEIIAGDQPMLLQQIWDTAGQERFHGGSLGSGFFRGANAALLVYDVSCAVSFEQVAMWREELLVRLD-VDPHDFPIVVIGNKV 333
            VGKTS+M +YV   FS   + TIGADF+TKE++  D  ++  Q+WDTAGQERF   SLG  F+RGA+  +LVYDV+ + SFE +  WR+E LV+   +DP  FP VVIGNKV
Sbjct:   19 VGKTSLMNQYVNKKFSASYKATIGADFLTKEVVMDDDRVVTLQLWDTAGQERFQ--SLGVAFYRGADCCVLVYDVNNSKSFETLESWRDEFLVQASPMDPESFPFVVIGNKV 128          
BLAST of mRNA_H-elongata_contig56319.13077.1 vs. uniprot
Match: W0TG78_KLUMD (GTP-binding protein YPT7 n=4 Tax=Kluyveromyces TaxID=4910 RepID=W0TG78_KLUMD)

HSP 1 Score: 123 bits (308), Expect = 4.900e-33
Identity = 59/112 (52.68%), Postives = 78/112 (69.64%), Query Frame = 1
Query:    1 VGKTSIMKRYVASDFSERRRPTIGADFMTKEIIAGDQPMLLQQIWDTAGQERFHGGSLGSGFFRGANAALLVYDVSCAVSFEQVAMWREELLVRLDVD-PHDFPIVVIGNKV 333
            VGKTS+M RYV   +S++ + TIGADF+TKE+I  D  +   Q+WDTAGQERF   SLG  F+RGA+  +LVYDV+ A SF+ +  WR+E LV  +V  P  FP V++ NKV
Sbjct:   18 VGKTSLMHRYVNDKYSQQYKATIGADFLTKEVIVNDDKVATMQVWDTAGQERFQ--SLGVAFYRGADCCVLVYDVTNAKSFDNIKSWRDEFLVHANVSSPETFPFVILANKV 127          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig56319.13077.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LTJ2_ECTSI1.680e-6490.09Rab7L, RAB family GTPase n=2 Tax=Ectocarpus TaxID=... [more]
A0A7S2RVV0_9STRA5.010e-3961.26Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
F0Y7J9_AURAN8.040e-3656.76Uncharacterized protein n=1 Tax=Aureococcus anopha... [more]
A0A0W0EL55_CANGB8.860e-3451.79GTP-binding protein YPT7 n=2 Tax=Candida glabrata ... [more]
A0A1E4TPK7_PACTA2.320e-3355.36Uncharacterized protein n=1 Tax=Pachysolen tannoph... [more]
R7QSY4_CHOCR3.370e-3356.25GTP-binding protein yptV5 n=1 Tax=Chondrus crispus... [more]
G8ZY45_TORDC3.560e-3351.79Uncharacterized protein n=6 Tax=Saccharomycetaceae... [more]
A0A0C2XM57_AMAMK4.650e-3353.57Uncharacterized protein n=4 Tax=Agaricales TaxID=5... [more]
A0A6A6YDE9_9PEZI4.770e-3354.46Ras-related protein-like protein n=2 Tax=Mytilinid... [more]
W0TG78_KLUMD4.900e-3352.68GTP-binding protein YPT7 n=4 Tax=Kluyveromyces Tax... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig56319contigH-elongata_contig56319:2731..3729 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score196.1
Seed ortholog evalue8.5e-48
Seed eggNOG ortholog2880.D8LTJ2
KEGG koko:K07897
KEGG Pathwayko04137,ko04138,ko04140,ko04144,ko04145,ko05132,ko05146,ko05152,map04137,map04138,map04140,map04144,map04145,map05132,map05146,map05152
EggNOG free text desc.GTPase activity
EggNOG OGsKOG0394@1,KOG0394@2759
COG Functional cat.K
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko04031,ko04131,ko04147
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionRab7L, RAB family GTPase
Ec32 orthologEc-02_005820.1
Exons3
Model size333
Cds size315
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig56319.13077.1prot_H-elongata_contig56319.13077.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig56319 2749..3729 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930916.8238075-UTR-H-elongata_contig56319:2730..27481622930916.8238075-UTR-H-elongata_contig56319:2730..2748Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig56319 2731..2748 +
1691679623.8068674-UTR-H-elongata_contig56319:2730..27481691679623.8068674-UTR-H-elongata_contig56319:2730..2748Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig56319 2731..2748 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930916.843267-CDS-H-elongata_contig56319:2748..28561622930916.843267-CDS-H-elongata_contig56319:2748..2856Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig56319 2749..2856 +
1691679623.8178825-CDS-H-elongata_contig56319:2748..28561691679623.8178825-CDS-H-elongata_contig56319:2748..2856Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig56319 2749..2856 +
1622930916.8630974-CDS-H-elongata_contig56319:3324..34471622930916.8630974-CDS-H-elongata_contig56319:3324..3447Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig56319 3325..3447 +
1691679623.8271503-CDS-H-elongata_contig56319:3324..34471691679623.8271503-CDS-H-elongata_contig56319:3324..3447Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig56319 3325..3447 +
1622930916.8764565-CDS-H-elongata_contig56319:3645..37291622930916.8764565-CDS-H-elongata_contig56319:3645..3729Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig56319 3646..3729 +
1691679623.838182-CDS-H-elongata_contig56319:3645..37291691679623.838182-CDS-H-elongata_contig56319:3645..3729Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig56319 3646..3729 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig56319.13077.1

>prot_H-elongata_contig56319.13077.1 ID=prot_H-elongata_contig56319.13077.1|Name=mRNA_H-elongata_contig56319.13077.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=105bp
MKRYVASDFSERRRPTIGADFMTKEIIAGDQPMLLQQIWDTAGQERFHGG
SLGSGFFRGANAALLVYDVSCAVSFEQVAMWREELLVRLDVDPHDFPIVV
IGNKV
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mRNA from alignment at H-elongata_contig56319:2731..3729+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig56319.13077.1 ID=mRNA_H-elongata_contig56319.13077.1|Name=mRNA_H-elongata_contig56319.13077.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=999bp|location=Sequence derived from alignment at H-elongata_contig56319:2731..3729+ (Himanthalia elongata Himel1 dioecious)
GTGGGGAAAACAAGCATCATGAAGCGGTACGTGGCAAGCGATTTCTCCGA GAGGCGTCGTCCAACCATCGGGGCGGACTTCATGACGAAAGAGATCATCG CAGGCGACCAGCCCATGCTCCTTCAGGTAAAGTCATACACGTCACGGCAA CACGTCACGGCAACACGTCACGGCAACACGTCACGGCGGGCTGGAAAGTA AGGAGAAGGGGGAGTGTAGCAGGAGAAGCTAGTAGGGGACGTAACGGTAC GGTCAAGAGTGCAGGAGAAGGGAAAAGAGGGGGGGGGGTGGCACCATCTG TTGTCCAACACGCTGTCTTGAGAAAAAAGTGTCTTGGAAAAAGAGATCAA GAATTAGTCGAAAGTAGTGCTCATCTTCGTTCATGAACTAACGTTCACAG TGAATTGCGCAACATCGCCCCAGGGTCTCCTAAGGGTTTCCAGCGTCAGT TTTTATTTTTGTTGTTCCTGTCGTGGCTTTTCGTGGGAGGGAAGGGGGGA TTGTTCCTAATAGTGTTTTTTTGTGTTACACTTTATTTTTATTTTCCAGC TTTTCTCGCAAAAAACACGCCCCGACGACTCGCCCTATCTTAAGCAGATC TGGGACACCGCGGGACAGGAAAGGTTTCACGGAGGATCTCTCGGCTCAGG GTTCTTCCGAGGGGCCAACGCCGCCCTGCTCGTCTACGACGTATCGTGCG CGGTTTCGTTCGAGCAGGTCTGTCTGTGTTAAGCGTGTTGTTGGTCACTA CGTGGTACTCTAATGTGCAATCCCCGTAAGGGGATGAAAGGTAACCCCCC CCCCAAAAAAAAAAAAAAAAAAAACACGGGGGGCTAATGGGCCCCTGTAT TCTTTATTTTTAATGGCCTTCTGGATCGTGGGGGTCTTGTTATTGCGCTT GGCGTGGAAGAGAAGGTGGCCATGTGGCGGGAGGAGCTGCTCGTGAGACT GGACGTGGATCCTCACGACTTCCCGATCGTGGTGATTGGGAATAAGGTA
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Coding sequence (CDS) from alignment at H-elongata_contig56319:2731..3729+

>mRNA_H-elongata_contig56319.13077.1 ID=mRNA_H-elongata_contig56319.13077.1|Name=mRNA_H-elongata_contig56319.13077.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=630bp|location=Sequence derived from alignment at H-elongata_contig56319:2731..3729+ (Himanthalia elongata Himel1 dioecious)
ATGAAGCGGTACGTGGCAAGCGATTTCTCCGAGAGGCGTCGTCCAACCAT
CGGGGCGGACTTCATGACGAAAGAGATCATCGCAGGCGACCAGCCCATGC
TCCTTCAGATGAAGCGGTACGTGGCAAGCGATTTCTCCGAGAGGCGTCGT
CCAACCATCGGGGCGGACTTCATGACGAAAGAGATCATCGCAGGCGACCA
GCCCATGCTCCTTCAGCAGATCTGGGACACCGCGGGACAGGAAAGGTTTC
ACGGAGGATCTCTCGGCTCAGGGTTCTTCCGAGGGGCCAACGCCGCCCTG
CTCGTCTACGACGTATCGTGCGCGGTTTCGTTCGAGCAGCAGATCTGGGA
CACCGCGGGACAGGAAAGGTTTCACGGAGGATCTCTCGGCTCAGGGTTCT
TCCGAGGGGCCAACGCCGCCCTGCTCGTCTACGACGTATCGTGCGCGGTT
TCGTTCGAGCAGGTGGCCATGTGGCGGGAGGAGCTGCTCGTGAGACTGGA
CGTGGATCCTCACGACTTCCCGATCGTGGTGATTGGGAATAAGGTAGTGG
CCATGTGGCGGGAGGAGCTGCTCGTGAGACTGGACGTGGATCCTCACGAC
TTCCCGATCGTGGTGATTGGGAATAAGGTA
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