mRNA_H-elongata_contig56240.13071.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig56240.13071.1
Unique NamemRNA_H-elongata_contig56240.13071.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig56240.13071.1 vs. uniprot
Match: D7FVM6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FVM6_ECTSI)

HSP 1 Score: 174 bits (440), Expect = 5.990e-47
Identity = 102/207 (49.28%), Postives = 128/207 (61.84%), Query Frame = 1 
Query:  151 FVEHRIVDHVDQLKQL-------DGSGARVPPPHIFCLPAPGGDVCLIVNEKGAYHAVRDSFPPLGLRVSQTGVVDTQVDAIGDTLFGTRFHLSDGTVRGPWCPGG-TAGPFL-------------------RLVRRLPRHIRQLIRCRRPLRS----YREDSPPLT--MSTRRLEVLTVSERPDGSLMLLLPSLPAV----GQGDA 660
            F +H +V+  DQL +L       +     VPPPH+F +PAPGGDVCL+V+EK  Y+A+RD FPP G+ VSQTGVVD+QVDAIGD+LFGTRF+L DGTVRGPWCPGG TAGP L                   R + RL  H+  + + RR   S    +R  S P     +T  LEVLTV+E+PDGSL + LP  P+V    G GD+
Sbjct:   58 FFQHTLVESTDQLDKLQQPRHHGNECSGPVPPPHLFRIPAPGGDVCLVVDEKKNYYAMRDCFPPFGVPVSQTGVVDSQVDAIGDSLFGTRFNLKDGTVRGPWCPGGGTAGPLLLRLARHRRHRLFNQCIGVARSINRLTHHLFSISKQRRARGSWATYFRPPSSPNANERTTTTLEVLTVTEQPDGSLTVALPRCPSVLAPGGGGDS 264
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BLAST of mRNA_H-elongata_contig56240.13071.1 vs. uniprot
Match: A0A6H5JUG0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUG0_9PHAE)

HSP 1 Score: 163 bits (413), Expect = 2.730e-43
Identity = 102/239 (42.68%), Postives = 133/239 (55.65%), Query Frame = 1 
Query:  139 PLPNFVEHRIVDHVDQLKQLDGSGAR---------VPPPHIFCLPAPGGDVCLIVNEKGAYHAVRDSFPPLGLRVSQTGVVDTQVDAIGDTLFGTRFHLSDGTVRGPWCPGG-TAGPFL-------------------RLVRRLPRHIRQLIRCRRP----LRSYREDSPPLTM---STRRLEVLTVSERPDGSLMLLLP----SLPAVGQGDAKITSACSN----TWWTRRCGLSGYD 723
            P   F ++ +V+  DQL+                 VPPPH+F +PAPGGDVCL+V+E  +Y+A+RD FPP G+ VSQTGVVD+QVDAIGD+LFGTRF+L DGTVRGPWCPGG TAGP L                   R +  L  H+    + RR       S+R  S P  +   +T  LEVLTV+E+ DGSL + LP    +L   G G++      S     + +  +C L GYD
Sbjct:   53 PTTEFFQYTLVESTDQLEXXXXXXXXXXGNEWFEPVPPPHLFRIPAPGGDVCLVVDENKSYYAMRDCFPPFGVPVSQTGVVDSQVDAIGDSLFGTRFNLEDGTVRGPWCPGGGTAGPLLLWLARHRRHRLFTLRIGVARSINHLTHHLFLFSKQRRARGSWATSFRPPSSPNFIEKTTTTTLEVLTVTEQLDGSLTVALPRCSSALAPGGNGNSAANGRPSPMHNASTFAAKCDLEGYD 291
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BLAST of mRNA_H-elongata_contig56240.13071.1 vs. uniprot
Match: A0A836CM18_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CM18_9STRA)

HSP 1 Score: 100 bits (249), Expect = 7.600e-19
Identity = 54/98 (55.10%), Postives = 64/98 (65.31%), Query Frame = 1 
Query:  175 HVDQLKQLDGSGARVPPPHIFCLPAPGGDVCLIVNEKGAYHAVRDSFPPLGLRVSQTGVVDTQVDAIGDTLFGTRFHLSDGTVRGPWCPGGTAGPFLR 468
            H DQL  L   GA  PPP +F +P   G VCL+V+E G  HA+RDS PPLG  +S TGVVD+++  I D  FGTRF+LS G  RG  CPGGTA   LR
Sbjct:  658 HKDQLAPL---GAP-PPPLVFSIPVLCGTVCLVVDENGKSHAMRDSCPPLGSPISATGVVDSEIGVIEDLRFGTRFYLSSGAPRGRLCPGGTAPRALR 751
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig56240.13071.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D7FVM6_ECTSI5.990e-4749.28Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JUG0_9PHAE2.730e-4342.68Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A836CM18_9STRA7.600e-1955.10Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig56240contigH-elongata_contig56240:726..2747 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Ec32 ortholog descriptionRieske [2Fe-2S] iron-sulphur domain
Ec32 orthologEc-01_009460.1
Exons2
Model size1377
Cds size693
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig56240.13071.1prot_H-elongata_contig56240.13071.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig56240 1374..2711 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930916.3093138-UTR-H-elongata_contig56240:725..13731622930916.3093138-UTR-H-elongata_contig56240:725..1373Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig56240 726..1373 -
1691679623.610114-UTR-H-elongata_contig56240:725..13731691679623.610114-UTR-H-elongata_contig56240:725..1373Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig56240 726..1373 -
1622930916.3597527-UTR-H-elongata_contig56240:2711..27471622930916.3597527-UTR-H-elongata_contig56240:2711..2747Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig56240 2712..2747 -
1691679623.637144-UTR-H-elongata_contig56240:2711..27471691679623.637144-UTR-H-elongata_contig56240:2711..2747Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig56240 2712..2747 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930916.3268278-CDS-H-elongata_contig56240:1373..17391622930916.3268278-CDS-H-elongata_contig56240:1373..1739Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig56240 1374..1739 -
1691679623.6188874-CDS-H-elongata_contig56240:1373..17391691679623.6188874-CDS-H-elongata_contig56240:1373..1739Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig56240 1374..1739 -
1622930916.342042-CDS-H-elongata_contig56240:2384..27111622930916.342042-CDS-H-elongata_contig56240:2384..2711Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig56240 2385..2711 -
1691679623.6278856-CDS-H-elongata_contig56240:2384..27111691679623.6278856-CDS-H-elongata_contig56240:2384..2711Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig56240 2385..2711 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig56240.13071.1

>prot_H-elongata_contig56240.13071.1 ID=prot_H-elongata_contig56240.13071.1|Name=mRNA_H-elongata_contig56240.13071.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=231bp
MYFTARIPSTGSLSFMLLTCCFLYLLKSSTAFFIPLPNFVEHRIVDHVDQ
LKQLDGSGARVPPPHIFCLPAPGGDVCLIVNEKGAYHAVRDSFPPLGLRV
SQTGVVDTQVDAIGDTLFGTRFHLSDGTVRGPWCPGGTAGPFLRLVRRLP
RHIRQLIRCRRPLRSYREDSPPLTMSTRRLEVLTVSERPDGSLMLLLPSL
PAVGQGDAKITSACSNTWWTRRCGLSGYDH*
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mRNA from alignment at H-elongata_contig56240:726..2747-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig56240.13071.1 ID=mRNA_H-elongata_contig56240.13071.1|Name=mRNA_H-elongata_contig56240.13071.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=2022bp|location=Sequence derived from alignment at H-elongata_contig56240:726..2747- (Himanthalia elongata Himel1 dioecious)
GTTCTCACGTTGGCATGAGCTTGTTCGCGTGGAGCAATGTATTTCACCGC
ACGGATACCATCTACTGGATCATTATCCTTTATGCTGCTGACCTGTTGCT
TCTTGTATCTTCTGAAATCTTCAACAGCGTTCTTCATTCCTCTGCCGAAT
TTCGTTGAACATCGAATTGTTGATCATGTCGATCAACTGAAACAGCTCGA
CGGGTCAGGAGCGCGTGTGCCTCCTCCACATATTTTCTGTCTGCCGGCAC
CGGGAGGGGACGTGTGCCTGATCGTGAATGAGAAAGGCGCTTACCATGCT
GTACGGGATTCGTTTCCGCCCTTGGGGCTGCGGGTTTCTCAAACGGGCGT
CGTAGATACTCAGGTGAAAGAATGGAGGCCACACTCCCAGCTCGAAAGGC
ATCGCTCGATGTAAGCGGCTCAGAGTGAGTTCGCGATGCAGCGACCCCAA
AAGCTATTTTTCTGATACAGAAGCAAAGTGCCACTTGATGCCTCATGGTG
AATCTTCTCTAAAGATTTGATGGGCTACTGCTGCCGTTCCCCTCGTGATT
TCCTTGAAAGTGGCACGCATTGACATCGCCAGGAGATCGAACGAAGCTGC
TTTGTCCTCGGTCACCTCCGCAGAGCATCATTATACATATAGTATCAATA
CAAATTTCGACTTTCAATAAAAAAATAGCGTAATCCGTGAAAGAACTAGA
GTAGCTCCAGCGGCAGCCACAGCGCAGCTCCGCCATCAGCAGCGCGAGCG
TTGGCGACTCACACCGCCTCACTCTCTTTAGTGCGAGTCTGCAGTGGTGC
TTCAGGCCATGTGTTGCACTCCTTGTATGCAGTCACTGGTTTCTGATAGT
GCTACGAGGAACATTATTGTGGACTGGACTACGATTGATAACTCCGCTCA
AGCGCCTGCTTCGTCATTGACCGATACGCCATTAACTGATACAGTAGTTT
TGTATAACAGGTTCATAATTTCTCGTCTTCCCCGGGCTTTTTACCCCCAA
TGAAACAGGTCGACGCGATCGGCGATACGCTGTTTGGGACGCGATTCCAC
CTGTCCGACGGGACAGTGCGCGGCCCTTGGTGCCCGGGGGGCACGGCTGG
CCCGTTCTTGCGGCTCGTACGCCGTCTCCCCCGCCACATCCGGCAATTGA
TACGTTGCCGACGACCGCTACGAAGCTATCGAGAAGATTCACCACCCTTG
ACGATGTCGACGAGGCGATTGGAGGTGCTTACCGTTTCGGAGCGCCCAGA
CGGAAGCTTGATGCTGCTGCTGCCGTCGTTGCCCGCGGTAGGGCAGGGAG
ACGCCAAGATCACTAGCGCATGTTCAAACACGTGGTGGACAAGAAGATGC
GGCCTGTCTGGCTACGACCACTAGGTCTGGTTAACCTGTGTGTGCGTGAC
TGTGTCGCGTGAAGCGCCTTCGCGTCGATCTTCGTCAATATTATTACGTA
AGGAGGTGTATGAGGCCGACGTTCACCATGGAAGCATGCGGTGGACCACC
GAATGAGACAAGCCCAGCGGCAGATAGCTCCTCATATAAGAATCACGAGG
AAAATCTTCTCTGGCACCAGCCATGCCTACCCCGGCGACCGAAGTAACAC
GATCGACTCATATTGTGGTGCGCGAGACGTTGACGTGAGCGTATAATACA
CAAGACTGATGGAAAAATGCTGAAAGGTTGCCGCCAGGTTTTATGGAGTC
ATCACGACGACATTCGCTTGTGACGTCGTCCTGGTCCTTCAGCCGCGACG
AGTTCATTTGTTAAGCCCGGTGGGGGAAAAAAACATCACCGGGATTCCGA
TTATCAGATTGGAGCCGCATTACAGCTTCCACCCACTAACATTCCAGGTT
CATCAGAGTTTCAGCCGGGCATGTAAGGCACGCGTGACTCTGGCTTGCTC
GTCGTGATTGCCACTATTTCCCGGAACTATAGTGGATTCTCTACAGGATA
CGCGGAAAGGCGCTTCTGGAGATGGGGCTTGGTAACGGTTGGTGATGAGA
TGCTTAGCCCTGACATGGCGCG
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Coding sequence (CDS) from alignment at H-elongata_contig56240:726..2747-

>mRNA_H-elongata_contig56240.13071.1 ID=mRNA_H-elongata_contig56240.13071.1|Name=mRNA_H-elongata_contig56240.13071.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1386bp|location=Sequence derived from alignment at H-elongata_contig56240:726..2747- (Himanthalia elongata Himel1 dioecious)
ATGTATTTCACCGCACGGATACCATCTACTGGATCATTATCCTTTATGCT
GCTGACCTGTTGCTTCTTGTATCTTCTGAAATCTTCAACAGCGTTCTTCA
TTCCTCTGCCGAATTTCGTTGAACATCGAATTGTTGATCATGTCGATCAA
CTGAAACAGCTCGACGGGTCAGGAGCGCGTGTGCCTCCTCCACATATTTT
CTGTCTGCCGGCACCGGGAGGGGACGTGTGCCTGATCGTGAATGAGAAAG
GCGCTTACCATGCTGTACGGGATTCGTTTCCGCCCTTGGGGCTGCGGGTT
TCTCAAACGGGCGTCGTAGATACTCAGATGTATTTCACCGCACGGATACC
ATCTACTGGATCATTATCCTTTATGCTGCTGACCTGTTGCTTCTTGTATC
TTCTGAAATCTTCAACAGCGTTCTTCATTCCTCTGCCGAATTTCGTTGAA
CATCGAATTGTTGATCATGTCGATCAACTGAAACAGCTCGACGGGTCAGG
AGCGCGTGTGCCTCCTCCACATATTTTCTGTCTGCCGGCACCGGGAGGGG
ACGTGTGCCTGATCGTGAATGAGAAAGGCGCTTACCATGCTGTACGGGAT
TCGTTTCCGCCCTTGGGGCTGCGGGTTTCTCAAACGGGCGTCGTAGATAC
TCAGGTCGACGCGATCGGCGATACGCTGTTTGGGACGCGATTCCACCTGT
CCGACGGGACAGTGCGCGGCCCTTGGTGCCCGGGGGGCACGGCTGGCCCG
TTCTTGCGGCTCGTACGCCGTCTCCCCCGCCACATCCGGCAATTGATACG
TTGCCGACGACCGCTACGAAGCTATCGAGAAGATTCACCACCCTTGACGA
TGTCGACGAGGCGATTGGAGGTGCTTACCGTTTCGGAGCGCCCAGACGGA
AGCTTGATGCTGCTGCTGCCGTCGTTGCCCGCGGTAGGGCAGGGAGACGC
CAAGATCACTAGCGCATGTTCAAACACGTGGTGGACAAGAAGATGCGGCC
TGTCTGGCTACGACCACTAGGTCGACGCGATCGGCGATACGCTGTTTGGG
ACGCGATTCCACCTGTCCGACGGGACAGTGCGCGGCCCTTGGTGCCCGGG
GGGCACGGCTGGCCCGTTCTTGCGGCTCGTACGCCGTCTCCCCCGCCACA
TCCGGCAATTGATACGTTGCCGACGACCGCTACGAAGCTATCGAGAAGAT
TCACCACCCTTGACGATGTCGACGAGGCGATTGGAGGTGCTTACCGTTTC
GGAGCGCCCAGACGGAAGCTTGATGCTGCTGCTGCCGTCGTTGCCCGCGG
TAGGGCAGGGAGACGCCAAGATCACTAGCGCATGTTCAAACACGTGGTGG
ACAAGAAGATGCGGCCTGTCTGGCTACGACCACTAG
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