mRNA_H-elongata_contig5621.13066.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig5621.13066.1
Unique NamemRNA_H-elongata_contig5621.13066.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig5621.13066.1 vs. uniprot
Match: A0A6H5JV14_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JV14_9PHAE)

HSP 1 Score: 130 bits (328), Expect = 1.870e-34
Identity = 69/174 (39.66%), Postives = 101/174 (58.05%), Query Frame = 1
Query:    1 PWSSLLICVPTKCGGIQIRVNHKKLNTMSEILQIVIPPVDEALDTL-GGSMF*ILDLFSGFTKFMLNPNTLQLTAFCTQNKLYGNLRIAQGATIDPAWFGSVVRLFRIGLGRIQIFLDDAIGSDDTLLNHMATLANFIPRLSLHKLKLSPIKSRVEAARVNFLGHVIFSGGVRP 519
            P+SS L+ +P K GG+ I VN++KLN +  + Q+ IP VD+ LD L  G ++ + D+ S F +  ++  T+ LTAF T + L+  L++ QG++  P WF  VV      L  +  +LDD I  DDT   H+ T+     RL  H LKL+P K+ + A   +FLGH I   GVRP
Sbjct:   45 PYSSPLVVIPKKSGGVHITVNYRKLNKLCALSQLPIPRVDDTLDKLLKGRIYSLFDMKSSFHQITVHRETIHLTAFVTSSGLFEWLKMPQGSSAAPGWFCKVVNEVIKNLRGVASYLDDLIVFDDTPATHVGTIRALFERLRTHNLKLTPPKATIGATEADFLGHTISPDGVRP 218          
BLAST of mRNA_H-elongata_contig5621.13066.1 vs. uniprot
Match: A0A6H5JFL9_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JFL9_9PHAE)

HSP 1 Score: 132 bits (332), Expect = 1.410e-32
Identity = 69/174 (39.66%), Postives = 104/174 (59.77%), Query Frame = 1
Query:    1 PWSSLLICVPTKCGGIQIRVNHKKLNTMSEILQIVIPPVDEALDTL-GGSMF*ILDLFSGFTKFMLNPNTLQLTAFCTQNKLYGNLRIAQGATIDPAWFGSVVRLFRIGLGRIQIFLDDAIGSDDTLLNHMATLANFIPRLSLHKLKLSPIKSRVEAARVNFLGHVIFSGGVRP 519
            P+SS L+ +P K GG++I VN++KLN +  + Q+ IP VD+ LD L  G ++ + D+ S F +  ++ +T+ LTAF T ++L+  L++ QG++  P WF  VV      L  +  +LDD I  DDT   H+ T+     RL  H LKL+P K+ + A   +FLGH I   GVRP
Sbjct:  202 PYSSPLVVIPKKSGGVRITVNYRKLNKLCALSQLPIPRVDDTLDKLLKGRIYSLFDMKSSFHQITVHRDTIPLTAFVTSSELFEWLKMPQGSSAAPGWFCKVVNEVIKNLHGVASYLDDLIVFDDTPATHVGTMRALFERLRTHNLKLTPPKATIGATEADFLGHTISPDGVRP 375          
BLAST of mRNA_H-elongata_contig5621.13066.1 vs. uniprot
Match: A0A6H5JR23_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JR23_9PHAE)

HSP 1 Score: 126 bits (317), Expect = 9.770e-32
Identity = 70/174 (40.23%), Postives = 98/174 (56.32%), Query Frame = 1
Query:    1 PWSSLLICVPTKCGGIQIRVNHKKLNTMSEILQIVIPPVDEALDTL-GGSMF*ILDLFSGFTKFMLNPNTLQLTAFCTQNKLYGNLRIAQGATIDPAWFGSVVRLFRIGLGRIQIFLDDAIGSDDTLLNHMATLANFIPRLSLHKLKLSPIKSRVEAARVNFLGHVIFSGGVRP 519
            P+SS L+ +P K GG++I VN+ KLN +  + Q+ IP VD+ LD L  G    + D+ S F +  ++ +T+ LTAF T + L+  L + QG +  P WF  VV      L  +  +LDD I  DDT   H+ T+     RL  H LKL+P K+ V A   +FLGH I   GVRP
Sbjct:   61 PYSSPLVVIPKKSGGVRITVNYCKLNKLCALSQLPIPRVDDTLDKLLKGQFHSLFDMKSSFHQITVHRDTIPLTAFVTSSGLFEWLEMPQGRSAAPGWFCKVVNEVIENLRGVASYLDDLIVFDDTPATHVGTMRALFERLRTHNLKLTPPKATVGATEADFLGHTISPDGVRP 234          
BLAST of mRNA_H-elongata_contig5621.13066.1 vs. uniprot
Match: A0A6H5JUZ4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUZ4_9PHAE)

HSP 1 Score: 129 bits (324), Expect = 1.790e-31
Identity = 69/174 (39.66%), Postives = 103/174 (59.20%), Query Frame = 1
Query:    1 PWSSLLICVPTKCGGIQIRVNHKKLNTMSEILQIVIPPVDEALDTL-GGSMF*ILDLFSGFTKFMLNPNTLQLTAFCTQNKLYGNLRIAQGATIDPAWFGSVVRLFRIGLGRIQIFLDDAIGSDDTLLNHMATLANFIPRLSLHKLKLSPIKSRVEAARVNFLGHVIFSGGVRP 519
            P+SS L+ +P K GG++I VN++KLN +  + Q+ IP VD+ LD L  G ++ + D+ S F +  ++ +T+ LTAF T + L+  L++ QG++  P WF  VV      L  +  +LDD I  DD   +H+ T+     RL  H LKL+P K+ V A   +FLGH I   GVRP
Sbjct:  307 PYSSPLVVIPKKSGGVRITVNYRKLNKLCALSQLPIPRVDDTLDKLLKGRIYSLFDMKSSFHQITVHRDTIPLTAFVTSSGLFEWLKMPQGSSAAPGWFCKVVNEVIKNLHGVASYLDDLIVFDDNPASHVDTMRALFERLRTHNLKLTPPKATVGATEADFLGHTISPDGVRP 480          
BLAST of mRNA_H-elongata_contig5621.13066.1 vs. uniprot
Match: A0A6H5JB88_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JB88_9PHAE)

HSP 1 Score: 124 bits (311), Expect = 2.030e-31
Identity = 68/174 (39.08%), Postives = 101/174 (58.05%), Query Frame = 1
Query:    1 PWSSLLICVPTKCGGIQIRVNHKKLNTMSEILQIVIPPVDEALDTL-GGSMF*ILDLFSGFTKFMLNPNTLQLTAFCTQNKLYGNLRIAQGATIDPAWFGSVVRLFRIGLGRIQIFLDDAIGSDDTLLNHMATLANFIPRLSLHKLKLSPIKSRVEAARVNFLGHVIFSGGVRP 519
            P+SS L+ +P K GG++I VN++KLN +  + Q+ I  VDE LD L  G+++ + D+ S F +  ++ +T+ LTAF T + L+  L++ QG+   P WF  VV      L  +  +L D I  D T   H+AT+ +   RL  H LKL+P K+ + A    FLGH I   GVRP
Sbjct:   45 PYSSPLVVIPKKSGGVRITVNYRKLNKLCALSQLPILRVDETLDKLLKGNIYSLFDIKSSFHQITVHRDTIPLTAFVTSSGLFEWLKMPQGSAAAPGWFFKVVNEVIKNLRGVASYLADLIVFDATPAAHVATIRSLFERLRTHSLKLTPPKATIGATEAEFLGHTISPDGVRP 218          
BLAST of mRNA_H-elongata_contig5621.13066.1 vs. uniprot
Match: A0A6H5J9N0_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J9N0_9PHAE)

HSP 1 Score: 125 bits (315), Expect = 2.650e-30
Identity = 69/174 (39.66%), Postives = 101/174 (58.05%), Query Frame = 1
Query:    1 PWSSLLICVPTKCGGIQIRVNHKKLNTMSEILQIVIPPVDEALDTL-GGSMF*ILDLFSGFTKFMLNPNTLQLTAFCTQNKLYGNLRIAQGATIDPAWFGSVVRLFRIGLGRIQIFLDDAIGSDDTLLNHMATLANFIPRLSLHKLKLSPIKSRVEAARVNFLGHVIFSGGVRP 519
            P+SS L+ +P K GG+ I VN +KLN +  + Q+ IP VD+ LD L  G +  + D+ S F +  ++ +T+ LTAF T + L+  L++ QG++  P WF  VV      L  +  +LDD I  DDT   H+ T+     RL  H LKL+P K+ + A + +FLGH I   GVRP
Sbjct:  375 PFSSPLVVIPKKSGGVHITVNCRKLNKLCALSQLPIPRVDDTLDKLLKGRIDSLFDMKSSFHQNTVHRHTIPLTAFVTSSGLFEWLKMPQGSSAAPGWFCKVVNEVIKNLHGVASYLDDLIVFDDTPATHVGTMRALFERLRTHNLKLTPPKATIGATKADFLGHTISPDGVRP 548          
BLAST of mRNA_H-elongata_contig5621.13066.1 vs. uniprot
Match: A0A6H5K9N3_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K9N3_9PHAE)

HSP 1 Score: 120 bits (301), Expect = 4.380e-30
Identity = 66/173 (38.15%), Postives = 97/173 (56.07%), Query Frame = 1
Query:    1 PWSSLLICVPTKCGGIQIRVNHKKLNTMSEILQIVIPPVDEALDTL-GGSMF*ILDLFSGFTKFMLNPNTLQLTAFCTQNKLYGNLRIAQGATIDPAWFGSVVRLFRIGLGRIQIFLDDAIGSDDTLLNHMATLANFIPRLSLHKLKLSPIKSRVEAARVNFLGHVIFSGGVR 516
            P+SS L+ +P K GG++I VN  KLN    + Q+ IP VD+ LD L  G ++ + D+ S F + M++ +T+ LT   T + L+  L++ QG++  P WF   V      L  +  +LDD I  DDT   H+ T+     RL  H LKL+P K+ + A   +FLGH I   GVR
Sbjct:   45 PYSSPLVVIPKKSGGVRITVNFSKLNKRCALSQLWIPRVDDTLDKLLRGRVYSLFDMKSSFHQIMVHRDTIPLTVSVTSSGLFEWLKMPQGSSAAPGWFCKAVDEVIKNLHGVASYLDDLIVVDDTPATHVGTMRALFERLRTHNLKLTPPKATIGATEADFLGHTISPDGVR 217          
BLAST of mRNA_H-elongata_contig5621.13066.1 vs. uniprot
Match: A0A6H5JBV9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JBV9_9PHAE)

HSP 1 Score: 123 bits (309), Expect = 1.570e-29
Identity = 67/174 (38.51%), Postives = 100/174 (57.47%), Query Frame = 1
Query:    1 PWSSLLICVPTKCGGIQIRVNHKKLNTMSEILQIVIPPVDEALDTL-GGSMF*ILDLFSGFTKFMLNPNTLQLTAFCTQNKLYGNLRIAQGATIDPAWFGSVVRLFRIGLGRIQIFLDDAIGSDDTLLNHMATLANFIPRLSLHKLKLSPIKSRVEAARVNFLGHVIFSGGVRP 519
            P+SS L+ +P K GG++  VN++KLN +  + Q+ IP VD+ LD L  G ++ I D+ S F +  ++ +T+ LTAF T   L+  L++ QG++    WF  VV+     L  +  +LDD I  D T   H+ T+     RL  H LKL+P K+ + A   +FLGH I   GVRP
Sbjct:   65 PYSSPLVVIPKKSGGVRTTVNYRKLNKLCALSQLPIPRVDDTLDKLLKGRIYSIFDMKSSFHQITVHRDTIPLTAFVTSFGLFAWLKMPQGSSAASGWFCKVVKEVIKNLRGVASYLDDLIVFDVTPATHVGTMRALFERLRAHNLKLTPPKATIGATEADFLGHTISPDGVRP 238          
BLAST of mRNA_H-elongata_contig5621.13066.1 vs. uniprot
Match: A0A6H5JDP0_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JDP0_9PHAE)

HSP 1 Score: 122 bits (306), Expect = 3.630e-29
Identity = 66/174 (37.93%), Postives = 101/174 (58.05%), Query Frame = 1
Query:    1 PWSSLLICVPTKCGGIQIRVNHKKLNTMSEILQIVIPPVDEALDTL-GGSMF*ILDLFSGFTKFMLNPNTLQLTAFCTQNKLYGNLRIAQGATIDPAWFGSVVRLFRIGLGRIQIFLDDAIGSDDTLLNHMATLANFIPRLSLHKLKLSPIKSRVEAARVNFLGHVIFSGGVRP 519
            P+SS L+ +P K GGI+I VN++KLN +  + Q+ IP VD+  D L  G ++ + D+ S F +  ++ +T+ LTAF T + L+  L++ QG++  P W   VV      L  +  +LDD I  DDT   H+ ++     RL  + LKL+P K+ + A   +FLGH I   GVRP
Sbjct:  407 PYSSPLVVIPKKSGGIRITVNYRKLNKLCALSQLPIPRVDDTWDNLLKGRIYFLFDMKSSFHQITVHRDTIPLTAFVTSSGLFEWLKMPQGSSAAPGWLCKVVNEVIKKLRGVASYLDDLIVFDDTPATHVGSMRALFGRLRTYNLKLTPPKATIGATEADFLGHTISPDGVRP 580          
BLAST of mRNA_H-elongata_contig5621.13066.1 vs. uniprot
Match: A0A6H5KWU8_9PHAE (Reverse transcriptase domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KWU8_9PHAE)

HSP 1 Score: 117 bits (294), Expect = 6.500e-29
Identity = 63/174 (36.21%), Postives = 100/174 (57.47%), Query Frame = 1
Query:    1 PWSSLLICVPTKCGGIQIRVNHKKLNTMSEILQIVIPPVDEALDTL-GGSMF*ILDLFSGFTKFMLNPNTLQLTAFCTQNKLYGNLRIAQGATIDPAWFGSVVRLFRIGLGRIQIFLDDAIGSDDTLLNHMATLANFIPRLSLHKLKLSPIKSRVEAARVNFLGHVIFSGGVRP 519
            P+SS L+ +P K GG++I VN++KLN +  + Q+ IP VD+ LD L  G ++ + ++   F +  ++ +T+ LTAF T + L+  L++ QG++  P WF  +    +  + R    LDD I  DDT   H+ T+     RL  H L+L+P K+ +     +FLGH I   GVRP
Sbjct:   61 PYSSPLVFIPKKSGGVRITVNYRKLNKLCALSQLPIPRVDDTLDKLLKGRIYSLFEMKFSFHQITVHRDTIPLTAFVTSSGLFEWLKLPQGSSAAPGWFAKLST--KSSIIRRCYILDDLIVFDDTPATHVGTMRALFERLRTHNLELTPPKATIGVTEADFLGHTISPDGVRP 232          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig5621.13066.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JV14_9PHAE1.870e-3439.66Reverse transcriptase domain-containing protein n=... [more]
A0A6H5JFL9_9PHAE1.410e-3239.66Reverse transcriptase domain-containing protein n=... [more]
A0A6H5JR23_9PHAE9.770e-3240.23Reverse transcriptase domain-containing protein n=... [more]
A0A6H5JUZ4_9PHAE1.790e-3139.66Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JB88_9PHAE2.030e-3139.08Reverse transcriptase domain-containing protein n=... [more]
A0A6H5J9N0_9PHAE2.650e-3039.66Reverse transcriptase domain-containing protein n=... [more]
A0A6H5K9N3_9PHAE4.380e-3038.15Reverse transcriptase domain-containing protein n=... [more]
A0A6H5JBV9_9PHAE1.570e-2938.51Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JDP0_9PHAE3.630e-2937.93Reverse transcriptase domain-containing protein n=... [more]
A0A6H5KWU8_9PHAE6.500e-2936.21Reverse transcriptase domain-containing protein n=... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig5621contigH-elongata_contig5621:4565..5083 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size519
Cds size330
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930915.6043968-CDS-H-elongata_contig5621:4564..48941622930915.6043968-CDS-H-elongata_contig5621:4564..4894Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig5621 4565..4894 -
1691679623.2849627-CDS-H-elongata_contig5621:4564..48941691679623.2849627-CDS-H-elongata_contig5621:4564..4894Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig5621 4565..4894 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930915.6254208-UTR-H-elongata_contig5621:4894..50831622930915.6254208-UTR-H-elongata_contig5621:4894..5083Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig5621 4895..5083 -
1691679623.2947538-UTR-H-elongata_contig5621:4894..50831691679623.2947538-UTR-H-elongata_contig5621:4894..5083Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig5621 4895..5083 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig5621.13066.1prot_H-elongata_contig5621.13066.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig5621 4565..4894 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig5621.13066.1

>prot_H-elongata_contig5621.13066.1 ID=prot_H-elongata_contig5621.13066.1|Name=mRNA_H-elongata_contig5621.13066.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=110bp
MLNPNTLQLTAFCTQNKLYGNLRIAQGATIDPAWFGSVVRLFRIGLGRIQ
IFLDDAIGSDDTLLNHMATLANFIPRLSLHKLKLSPIKSRVEAARVNFLG
HVIFSGGVRP
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mRNA from alignment at H-elongata_contig5621:4565..5083-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig5621.13066.1 ID=mRNA_H-elongata_contig5621.13066.1|Name=mRNA_H-elongata_contig5621.13066.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=519bp|location=Sequence derived from alignment at H-elongata_contig5621:4565..5083- (Himanthalia elongata Himel1 dioecious)
CCATGGTCTAGCCTTCTCATATGCGTCCCAACCAAATGCGGAGGGATTCA GATCAGAGTCAATCATAAGAAATTGAATACAATGTCCGAAATCCTTCAAA TCGTGATTCCGCCTGTTGACGAAGCTCTCGACACTCTAGGTGGATCCATG TTTTAAATATTGGACCTTTTTTCCGGTTTCACAAAATTCATGTTAAACCC AAACACTCTACAACTGACAGCCTTCTGCACCCAAAACAAGTTGTACGGAA ATTTACGAATTGCTCAAGGCGCCACTATCGACCCCGCCTGGTTTGGTTCT GTAGTGCGACTTTTTAGGATCGGCCTAGGTCGCATCCAAATATTCTTGGA TGACGCGATCGGATCTGATGACACACTGCTCAATCATATGGCGACACTGG CCAACTTCATCCCGCGGTTGAGCCTCCACAAACTGAAGCTCTCGCCTATT AAGTCGCGCGTTGAAGCCGCCCGCGTTAACTTTCTTGGCCACGTCATATT CTCTGGTGGCGTCCGCCCC
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Coding sequence (CDS) from alignment at H-elongata_contig5621:4565..5083-

>mRNA_H-elongata_contig5621.13066.1 ID=mRNA_H-elongata_contig5621.13066.1|Name=mRNA_H-elongata_contig5621.13066.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=660bp|location=Sequence derived from alignment at H-elongata_contig5621:4565..5083- (Himanthalia elongata Himel1 dioecious)
ATGTTAAACCCAAACACTCTACAACTGACAGCCTTCTGCACCCAAAACAA
GTTGTACGGAAATTTACGAATTGCTCAAGGCGCCACTATCGACCCCGCCT
GGTTTGGTTCTGTAGTGCGACTTTTTAGGATCGGCCTAGGTCGCATCCAA
ATATTCTTGGATGACGCGATCGGATCTGATGACACACTGCTCAATCATAT
GGCGACACTGGCCAACTTCATCCCGCGGTTGAGCCTCCACAAACTGAAGC
TCTCGCCTATTAAGTCGCGCGTTGAAGCCGCCCGCGTTAACTTTCTTGGC
CACGTCATATTCTCTGGTGGCGTCCGCCCCATGTTAAACCCAAACACTCT
ACAACTGACAGCCTTCTGCACCCAAAACAAGTTGTACGGAAATTTACGAA
TTGCTCAAGGCGCCACTATCGACCCCGCCTGGTTTGGTTCTGTAGTGCGA
CTTTTTAGGATCGGCCTAGGTCGCATCCAAATATTCTTGGATGACGCGAT
CGGATCTGATGACACACTGCTCAATCATATGGCGACACTGGCCAACTTCA
TCCCGCGGTTGAGCCTCCACAAACTGAAGCTCTCGCCTATTAAGTCGCGC
GTTGAAGCCGCCCGCGTTAACTTTCTTGGCCACGTCATATTCTCTGGTGG
CGTCCGCCCC
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