mRNA_H-elongata_contig55856.13014.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig55856.13014.1 vs. uniprot
Match: D8LND5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LND5_ECTSI) HSP 1 Score: 83.6 bits (205), Expect = 3.770e-17 Identity = 40/59 (67.80%), Postives = 44/59 (74.58%), Query Frame = 1
Query: 7 PSAERACDKAVYKMAEKFSRNDVVPAERDVAKRTYYLEEGRIRTLYHYPDGDVTRTSKV 183
P + A D VYKM EKF R V AERDVAKR+YYL EGRIRTLYHYP+GDVTR K+
Sbjct: 413 PGTDGAGDLVVYKMTEKFERKGGVAAERDVAKRSYYLAEGRIRTLYHYPEGDVTRVRKM 471
BLAST of mRNA_H-elongata_contig55856.13014.1 vs. uniprot
Match: A0A7S2BRU8_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2BRU8_9STRA) HSP 1 Score: 64.7 bits (156), Expect = 1.610e-10 Identity = 31/56 (55.36%), Postives = 40/56 (71.43%), Query Frame = 1
Query: 7 PSAERA-CDKAVYKMAEKFSRNDVVPAERDVAKRTYYLEEGRIRTLYHYPDGDVTR 171
PS E + D KM KF+RN PA++D+AKRT+YL+EGRIRTLYHY + +TR
Sbjct: 159 PSGEPSTADLVTQKMTLKFARNPDKPADQDIAKRTFYLQEGRIRTLYHYAESRITR 214
BLAST of mRNA_H-elongata_contig55856.13014.1 vs. uniprot
Match: F0YMP4_AURAN (Uncharacterized protein (Fragment) n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YMP4_AURAN) HSP 1 Score: 62.0 bits (149), Expect = 1.470e-9 Identity = 29/59 (49.15%), Postives = 40/59 (67.80%), Query Frame = 1
Query: 7 PSAERACDKAVYKMAEKFSRNDVVPAERDVAKRTYYLEEGRIRTLYHYPDGDVTRTSKV 183
P E A + V KM +KF RN A+ DV KRT+Y++EGRIRT +HY D +TR+++V
Sbjct: 521 PGGESAGELIVQKMTQKFVRNAARKADEDVQKRTFYVQEGRIRTQFHYDDLRITRSTRV 579
BLAST of mRNA_H-elongata_contig55856.13014.1 vs. uniprot
Match: A0A7S0R7H1_9CHLO (Hypothetical protein n=1 Tax=Chlamydomonas leiostraca TaxID=1034604 RepID=A0A7S0R7H1_9CHLO) HSP 1 Score: 62.0 bits (149), Expect = 1.480e-9 Identity = 28/50 (56.00%), Postives = 36/50 (72.00%), Query Frame = 1
Query: 37 VYKMAEKFSRNDVVPAERDVAKRTYYLEEGRIRTLYHYPDGDVTRTSKVL 186
+ KM EKF+R+ +PA+ DVAKR YYL EGRIR +HY +G VTR +V
Sbjct: 959 IRKMTEKFARDPKLPADADVAKRVYYLAEGRIRVDFHYGEGRVTRAGRVF 1008
BLAST of mRNA_H-elongata_contig55856.13014.1 vs. uniprot
Match: A0A7S4CRY7_9EUGL (Hypothetical protein n=1 Tax=Eutreptiella gymnastica TaxID=73025 RepID=A0A7S4CRY7_9EUGL) HSP 1 Score: 60.8 bits (146), Expect = 3.760e-9 Identity = 29/49 (59.18%), Postives = 36/49 (73.47%), Query Frame = 1
Query: 43 KMAEKFSRNDVVPAERDVAKRTYY---LEEGRIRTLYHYPDGDVTRTSK 180
KM EKF RN VPA++DVAKRT+Y +EG IR +YHY DG +TR S+
Sbjct: 596 KMTEKFDRNPDVPADQDVAKRTFYSPGTQEGLIRIIYHYADGKITRPSR 644
BLAST of mRNA_H-elongata_contig55856.13014.1 vs. uniprot
Match: A0A7S1I6I9_9EUGL (Hypothetical protein n=1 Tax=Eutreptiella gymnastica TaxID=73025 RepID=A0A7S1I6I9_9EUGL) HSP 1 Score: 59.7 bits (143), Expect = 9.600e-9 Identity = 28/49 (57.14%), Postives = 36/49 (73.47%), Query Frame = 1
Query: 43 KMAEKFSRNDVVPAERDVAKRTYY---LEEGRIRTLYHYPDGDVTRTSK 180
KM EKF+RN VPA++D+AKRT+Y EG IR +YHY DG +TR S+
Sbjct: 562 KMCEKFARNPDVPADQDIAKRTFYNPGTPEGLIRIIYHYADGKITRPSR 610
BLAST of mRNA_H-elongata_contig55856.13014.1 vs. uniprot
Match: A0A7S3VL57_DUNTE (Hypothetical protein n=2 Tax=Dunaliella tertiolecta TaxID=3047 RepID=A0A7S3VL57_DUNTE) HSP 1 Score: 57.8 bits (138), Expect = 4.560e-8 Identity = 26/50 (52.00%), Postives = 36/50 (72.00%), Query Frame = 1
Query: 37 VYKMAEKFSRNDVVPAERDVAKRTYYLEEGRIRTLYHYPDGDVTRTSKVL 186
+ KM EKF+RN + A++DVAKR +YL EGRIR +HY + VTR+ +V
Sbjct: 466 IRKMTEKFARNQDISADQDVAKRVFYLAEGRIRVDHHYGEQRVTRSGRVF 515
BLAST of mRNA_H-elongata_contig55856.13014.1 vs. uniprot
Match: A0A8J4CF74_9CHLO (Uncharacterized protein n=1 Tax=Volvox reticuliferus TaxID=1737510 RepID=A0A8J4CF74_9CHLO) HSP 1 Score: 54.7 bits (130), Expect = 5.470e-8 Identity = 28/60 (46.67%), Postives = 37/60 (61.67%), Query Frame = 1
Query: 10 SAERACDKA---VYKMAEKFSRNDVVPAERDVAKRTYYLEEGRIRTLYHYPDGDVTRTSK 180
S R DK + KM EKF+RN + A+ DVAKR YYL EGR+R YH+ +T +S+
Sbjct: 13 SKNRGGDKRMLPIRKMTEKFARNSPLDADADVAKRVYYLTEGRMRVDYHFGTNRITNSSR 72
BLAST of mRNA_H-elongata_contig55856.13014.1 vs. uniprot
Match: A0A835YIG5_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YIG5_9STRA) HSP 1 Score: 57.4 bits (137), Expect = 6.250e-8 Identity = 25/41 (60.98%), Postives = 34/41 (82.93%), Query Frame = 1
Query: 28 DKAVYKMAEKFSRNDVVPAERDVAKRTYYLEEGRIRTLYHY 150
++ V KM EK++R + + AERDVAKRT+Y+ EGRIRTL+HY
Sbjct: 494 EQMVAKMTEKYAREERIRAERDVAKRTFYVTEGRIRTLFHY 534
BLAST of mRNA_H-elongata_contig55856.13014.1 vs. uniprot
Match: A0A7S1KU27_9EUKA (Hypothetical protein n=1 Tax=Percolomonas cosmopolitus TaxID=63605 RepID=A0A7S1KU27_9EUKA) HSP 1 Score: 57.0 bits (136), Expect = 8.580e-8 Identity = 26/55 (47.27%), Postives = 38/55 (69.09%), Query Frame = 1
Query: 4 YPSAERACDKAVYKMAEKFSRNDVVPAERDVAKRTYYLEEGRIRTLYHYPDGDVT 168
+P+ + +++V KM+EKF R+ A+ DVAKRT+YL EGR+R LYHY +T
Sbjct: 610 HPTFKSMEERSVLKMSEKFERDSSKIADEDVAKRTFYLNEGRMRLLYHYGPDKIT 664 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig55856.13014.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig55856.13014.1 >prot_H-elongata_contig55856.13014.1 ID=prot_H-elongata_contig55856.13014.1|Name=mRNA_H-elongata_contig55856.13014.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=70bp FYPSAERACDKAVYKMAEKFSRNDVVPAERDVAKRTYYLEEGRIRTLYHYback to top mRNA from alignment at H-elongata_contig55856:3547..3756- Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig55856.13014.1 ID=mRNA_H-elongata_contig55856.13014.1|Name=mRNA_H-elongata_contig55856.13014.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=210bp|location=Sequence derived from alignment at H-elongata_contig55856:3547..3756- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig55856:3547..3756- >mRNA_H-elongata_contig55856.13014.1 ID=mRNA_H-elongata_contig55856.13014.1|Name=mRNA_H-elongata_contig55856.13014.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=420bp|location=Sequence derived from alignment at H-elongata_contig55856:3547..3756- (Himanthalia elongata Himel1 dioecious)back to top |