mRNA_H-elongata_contig55856.13014.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig55856.13014.1
Unique NamemRNA_H-elongata_contig55856.13014.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig55856.13014.1 vs. uniprot
Match: D8LND5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LND5_ECTSI)

HSP 1 Score: 83.6 bits (205), Expect = 3.770e-17
Identity = 40/59 (67.80%), Postives = 44/59 (74.58%), Query Frame = 1
Query:    7 PSAERACDKAVYKMAEKFSRNDVVPAERDVAKRTYYLEEGRIRTLYHYPDGDVTRTSKV 183
            P  + A D  VYKM EKF R   V AERDVAKR+YYL EGRIRTLYHYP+GDVTR  K+
Sbjct:  413 PGTDGAGDLVVYKMTEKFERKGGVAAERDVAKRSYYLAEGRIRTLYHYPEGDVTRVRKM 471          
BLAST of mRNA_H-elongata_contig55856.13014.1 vs. uniprot
Match: A0A7S2BRU8_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2BRU8_9STRA)

HSP 1 Score: 64.7 bits (156), Expect = 1.610e-10
Identity = 31/56 (55.36%), Postives = 40/56 (71.43%), Query Frame = 1
Query:    7 PSAERA-CDKAVYKMAEKFSRNDVVPAERDVAKRTYYLEEGRIRTLYHYPDGDVTR 171
            PS E +  D    KM  KF+RN   PA++D+AKRT+YL+EGRIRTLYHY +  +TR
Sbjct:  159 PSGEPSTADLVTQKMTLKFARNPDKPADQDIAKRTFYLQEGRIRTLYHYAESRITR 214          
BLAST of mRNA_H-elongata_contig55856.13014.1 vs. uniprot
Match: F0YMP4_AURAN (Uncharacterized protein (Fragment) n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YMP4_AURAN)

HSP 1 Score: 62.0 bits (149), Expect = 1.470e-9
Identity = 29/59 (49.15%), Postives = 40/59 (67.80%), Query Frame = 1
Query:    7 PSAERACDKAVYKMAEKFSRNDVVPAERDVAKRTYYLEEGRIRTLYHYPDGDVTRTSKV 183
            P  E A +  V KM +KF RN    A+ DV KRT+Y++EGRIRT +HY D  +TR+++V
Sbjct:  521 PGGESAGELIVQKMTQKFVRNAARKADEDVQKRTFYVQEGRIRTQFHYDDLRITRSTRV 579          
BLAST of mRNA_H-elongata_contig55856.13014.1 vs. uniprot
Match: A0A7S0R7H1_9CHLO (Hypothetical protein n=1 Tax=Chlamydomonas leiostraca TaxID=1034604 RepID=A0A7S0R7H1_9CHLO)

HSP 1 Score: 62.0 bits (149), Expect = 1.480e-9
Identity = 28/50 (56.00%), Postives = 36/50 (72.00%), Query Frame = 1
Query:   37 VYKMAEKFSRNDVVPAERDVAKRTYYLEEGRIRTLYHYPDGDVTRTSKVL 186
            + KM EKF+R+  +PA+ DVAKR YYL EGRIR  +HY +G VTR  +V 
Sbjct:  959 IRKMTEKFARDPKLPADADVAKRVYYLAEGRIRVDFHYGEGRVTRAGRVF 1008          
BLAST of mRNA_H-elongata_contig55856.13014.1 vs. uniprot
Match: A0A7S4CRY7_9EUGL (Hypothetical protein n=1 Tax=Eutreptiella gymnastica TaxID=73025 RepID=A0A7S4CRY7_9EUGL)

HSP 1 Score: 60.8 bits (146), Expect = 3.760e-9
Identity = 29/49 (59.18%), Postives = 36/49 (73.47%), Query Frame = 1
Query:   43 KMAEKFSRNDVVPAERDVAKRTYY---LEEGRIRTLYHYPDGDVTRTSK 180
            KM EKF RN  VPA++DVAKRT+Y    +EG IR +YHY DG +TR S+
Sbjct:  596 KMTEKFDRNPDVPADQDVAKRTFYSPGTQEGLIRIIYHYADGKITRPSR 644          
BLAST of mRNA_H-elongata_contig55856.13014.1 vs. uniprot
Match: A0A7S1I6I9_9EUGL (Hypothetical protein n=1 Tax=Eutreptiella gymnastica TaxID=73025 RepID=A0A7S1I6I9_9EUGL)

HSP 1 Score: 59.7 bits (143), Expect = 9.600e-9
Identity = 28/49 (57.14%), Postives = 36/49 (73.47%), Query Frame = 1
Query:   43 KMAEKFSRNDVVPAERDVAKRTYY---LEEGRIRTLYHYPDGDVTRTSK 180
            KM EKF+RN  VPA++D+AKRT+Y     EG IR +YHY DG +TR S+
Sbjct:  562 KMCEKFARNPDVPADQDIAKRTFYNPGTPEGLIRIIYHYADGKITRPSR 610          
BLAST of mRNA_H-elongata_contig55856.13014.1 vs. uniprot
Match: A0A7S3VL57_DUNTE (Hypothetical protein n=2 Tax=Dunaliella tertiolecta TaxID=3047 RepID=A0A7S3VL57_DUNTE)

HSP 1 Score: 57.8 bits (138), Expect = 4.560e-8
Identity = 26/50 (52.00%), Postives = 36/50 (72.00%), Query Frame = 1
Query:   37 VYKMAEKFSRNDVVPAERDVAKRTYYLEEGRIRTLYHYPDGDVTRTSKVL 186
            + KM EKF+RN  + A++DVAKR +YL EGRIR  +HY +  VTR+ +V 
Sbjct:  466 IRKMTEKFARNQDISADQDVAKRVFYLAEGRIRVDHHYGEQRVTRSGRVF 515          
BLAST of mRNA_H-elongata_contig55856.13014.1 vs. uniprot
Match: A0A8J4CF74_9CHLO (Uncharacterized protein n=1 Tax=Volvox reticuliferus TaxID=1737510 RepID=A0A8J4CF74_9CHLO)

HSP 1 Score: 54.7 bits (130), Expect = 5.470e-8
Identity = 28/60 (46.67%), Postives = 37/60 (61.67%), Query Frame = 1
Query:   10 SAERACDKA---VYKMAEKFSRNDVVPAERDVAKRTYYLEEGRIRTLYHYPDGDVTRTSK 180
            S  R  DK    + KM EKF+RN  + A+ DVAKR YYL EGR+R  YH+    +T +S+
Sbjct:   13 SKNRGGDKRMLPIRKMTEKFARNSPLDADADVAKRVYYLTEGRMRVDYHFGTNRITNSSR 72          
BLAST of mRNA_H-elongata_contig55856.13014.1 vs. uniprot
Match: A0A835YIG5_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YIG5_9STRA)

HSP 1 Score: 57.4 bits (137), Expect = 6.250e-8
Identity = 25/41 (60.98%), Postives = 34/41 (82.93%), Query Frame = 1
Query:   28 DKAVYKMAEKFSRNDVVPAERDVAKRTYYLEEGRIRTLYHY 150
            ++ V KM EK++R + + AERDVAKRT+Y+ EGRIRTL+HY
Sbjct:  494 EQMVAKMTEKYAREERIRAERDVAKRTFYVTEGRIRTLFHY 534          
BLAST of mRNA_H-elongata_contig55856.13014.1 vs. uniprot
Match: A0A7S1KU27_9EUKA (Hypothetical protein n=1 Tax=Percolomonas cosmopolitus TaxID=63605 RepID=A0A7S1KU27_9EUKA)

HSP 1 Score: 57.0 bits (136), Expect = 8.580e-8
Identity = 26/55 (47.27%), Postives = 38/55 (69.09%), Query Frame = 1
Query:    4 YPSAERACDKAVYKMAEKFSRNDVVPAERDVAKRTYYLEEGRIRTLYHYPDGDVT 168
            +P+ +   +++V KM+EKF R+    A+ DVAKRT+YL EGR+R LYHY    +T
Sbjct:  610 HPTFKSMEERSVLKMSEKFERDSSKIADEDVAKRTFYLNEGRMRLLYHYGPDKIT 664          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig55856.13014.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LND5_ECTSI3.770e-1767.80Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A7S2BRU8_9STRA1.610e-1055.36Hypothetical protein n=1 Tax=Florenciella parvula ... [more]
F0YMP4_AURAN1.470e-949.15Uncharacterized protein (Fragment) n=1 Tax=Aureoco... [more]
A0A7S0R7H1_9CHLO1.480e-956.00Hypothetical protein n=1 Tax=Chlamydomonas leiostr... [more]
A0A7S4CRY7_9EUGL3.760e-959.18Hypothetical protein n=1 Tax=Eutreptiella gymnasti... [more]
A0A7S1I6I9_9EUGL9.600e-957.14Hypothetical protein n=1 Tax=Eutreptiella gymnasti... [more]
A0A7S3VL57_DUNTE4.560e-852.00Hypothetical protein n=2 Tax=Dunaliella tertiolect... [more]
A0A8J4CF74_9CHLO5.470e-846.67Uncharacterized protein n=1 Tax=Volvox reticulifer... [more]
A0A835YIG5_9STRA6.250e-860.98Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A7S1KU27_9EUKA8.580e-847.27Hypothetical protein n=1 Tax=Percolomonas cosmopol... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig55856contigH-elongata_contig55856:3547..3756 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score84.3
Seed ortholog evalue2.4e-14
Seed eggNOG ortholog2880.D8LND5
Preferred nameCCDC135
KEGG koko:K18402
GOsGO:0000003,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005929,GO:0006928,GO:0007320,GO:0007618,GO:0007620,GO:0008150,GO:0009987,GO:0019953,GO:0022414,GO:0030317,GO:0031514,GO:0032501,GO:0032504,GO:0040011,GO:0042995,GO:0043226,GO:0044424,GO:0044464,GO:0044703,GO:0044706,GO:0046692,GO:0046693,GO:0048609,GO:0048870,GO:0051179,GO:0051674,GO:0051704,GO:0097722,GO:0120025
EggNOG free text desc.multicellular organismal reproductive process
EggNOG OGs28JA6@1,2QRNZ@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03036
Hectar predicted targeting categoryother localisation
Exons1
Model size210
Cds size210
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930909.6761966-CDS-H-elongata_contig55856:3546..37561622930909.6761966-CDS-H-elongata_contig55856:3546..3756Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig55856 3547..3756 -
1691679620.7901828-CDS-H-elongata_contig55856:3546..37561691679620.7901828-CDS-H-elongata_contig55856:3546..3756Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig55856 3547..3756 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig55856.13014.1prot_H-elongata_contig55856.13014.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig55856 3547..3756 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig55856.13014.1

>prot_H-elongata_contig55856.13014.1 ID=prot_H-elongata_contig55856.13014.1|Name=mRNA_H-elongata_contig55856.13014.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=70bp
FYPSAERACDKAVYKMAEKFSRNDVVPAERDVAKRTYYLEEGRIRTLYHY
PDGDVTRTSKVLPHIFSTP*
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mRNA from alignment at H-elongata_contig55856:3547..3756-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig55856.13014.1 ID=mRNA_H-elongata_contig55856.13014.1|Name=mRNA_H-elongata_contig55856.13014.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=210bp|location=Sequence derived from alignment at H-elongata_contig55856:3547..3756- (Himanthalia elongata Himel1 dioecious)
TTCTATCCCTCTGCCGAACGCGCATGCGACAAGGCCGTATACAAGATGGC GGAGAAATTTTCACGCAACGATGTGGTGCCCGCCGAGCGCGACGTGGCCA AGAGGACCTACTACCTGGAGGAGGGGCGCATCCGTACACTTTATCACTAC CCAGACGGCGATGTCACACGGACGAGCAAGGTACTTCCGCACATATTTTC AACACCTTGA
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Coding sequence (CDS) from alignment at H-elongata_contig55856:3547..3756-

>mRNA_H-elongata_contig55856.13014.1 ID=mRNA_H-elongata_contig55856.13014.1|Name=mRNA_H-elongata_contig55856.13014.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=420bp|location=Sequence derived from alignment at H-elongata_contig55856:3547..3756- (Himanthalia elongata Himel1 dioecious)
TTCTATCCCTCTGCCGAACGCGCATGCGACAAGGCCGTATACAAGATGGC
GGAGAAATTTTCACGCAACGATGTGGTGCCCGCCGAGCGCGACGTGGCCA
AGAGGACCTACTACCTGGAGGAGGGGCGCATCCGTACACTTTATCACTAC
CCAGACGGCGATGTCACACGGACGAGCAAGGTACTTCCGCACATATTTTC
AACACCTTGATTCTATCCCTCTGCCGAACGCGCATGCGACAAGGCCGTAT
ACAAGATGGCGGAGAAATTTTCACGCAACGATGTGGTGCCCGCCGAGCGC
GACGTGGCCAAGAGGACCTACTACCTGGAGGAGGGGCGCATCCGTACACT
TTATCACTACCCAGACGGCGATGTCACACGGACGAGCAAGGTACTTCCGC
ACATATTTTCAACACCTTGA
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