mRNA_H-elongata_contig55724.13000.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig55724.13000.1 vs. uniprot
Match: D8LNY1_ECTSI (Probable extracellular nuclease n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LNY1_ECTSI) HSP 1 Score: 146 bits (369), Expect = 1.640e-38 Identity = 70/112 (62.50%), Postives = 89/112 (79.46%), Query Frame = 1
Query: 1 LWQPYRPEMYFYEAVECLRRVFLSGIVVFVFPNTAGQLGTTFLFALLFFVVLMVLNPYSNQRDGWLARIGHAIVMLSMFVALMAKVDTSDDDISSQDVFAGVLVAANCIMIL 336
LWQPYR +Y+YE VEC RRV LSG+V+F+ PNTAGQ+ T FL ++ FF + VL+PY+++RD WLARIGHAIVM+S+FVA+ KVD + DD SQDVFAG LVAAN ++ L
Sbjct: 893 LWQPYRQSVYYYEVVECFRRVTLSGLVIFILPNTAGQVMTGFLLSVAFFALFTVLDPYAHRRDTWLARIGHAIVMMSLFVAMAVKVDVTADDGFSQDVFAGALVAANVVLAL 1004
BLAST of mRNA_H-elongata_contig55724.13000.1 vs. uniprot
Match: A0A6H5JWT9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JWT9_9PHAE) HSP 1 Score: 132 bits (331), Expect = 2.190e-33 Identity = 63/113 (55.75%), Postives = 81/113 (71.68%), Query Frame = 1
Query: 1 LWQPYRPEMYFYEAVECLRRVFLSGIVVFVFPNTAGQLGTTFLFALLFFVVLMVLNPYSNQRDGWLARIGHAIVMLSMFVALMAKVDTSDDDISSQDVFAGVLVAANCIMILA 339
LW+PYRPE ++YE +EC RRV L+G+VVF++PNTA Q+ T L A F +V +L PY + D WL+R GH IV LSMF L+ KVD SD+ SQ VFAGV+VA +C+M LA
Sbjct: 1011 LWEPYRPERFYYEVIECGRRVLLTGVVVFIYPNTAAQVAVTILIAFFFLMVYEMLAPYRSDSDMWLSRGGHVIVFLSMFDVLLLKVDVSDERTESQRVFAGVIVAGHCLMFLA 1123
BLAST of mRNA_H-elongata_contig55724.13000.1 vs. uniprot
Match: A0A6H5J7J9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J7J9_9PHAE) HSP 1 Score: 129 bits (325), Expect = 1.410e-32 Identity = 61/113 (53.98%), Postives = 82/113 (72.57%), Query Frame = 1
Query: 1 LWQPYRPEMYFYEAVECLRRVFLSGIVVFVFPNTAGQLGTTFLFALLFFVVLMVLNPYSNQRDGWLARIGHAIVMLSMFVALMAKVDTSDDDISSQDVFAGVLVAANCIMILA 339
LW+PYRPE ++YE +EC RR+ L+G+V F+FPN A Q+ T L A F +V V++PY+++ D WL+R GH IV LSMF AL+ KVD S + SQDVFAGV VA + ++ILA
Sbjct: 912 LWEPYRPERFYYEVIECGRRIMLTGVVAFIFPNDAAQIAITMLVAFFFSLVFEVMSPYTSESDTWLSRGGHVIVFLSMFDALLLKVDVSSESEQSQDVFAGVFVAGHVLLILA 1024
BLAST of mRNA_H-elongata_contig55724.13000.1 vs. uniprot
Match: A0A6H5KX12_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KX12_9PHAE) HSP 1 Score: 127 bits (320), Expect = 6.640e-32 Identity = 62/113 (54.87%), Postives = 80/113 (70.80%), Query Frame = 1
Query: 1 LWQPYRPEMYFYEAVECLRRVFLSGIVVFVFPNTAGQLGTTFLFALLFFVVLMVLNPYSNQRDGWLARIGHAIVMLSMFVALMAKVDTSDDDISSQDVFAGVLVAANCIMILA 339
LW+PYRPE ++YE VEC RRV L+G+VVF+FPN A Q+ T L A FF + +++PY + D WL+R GH IV SMF L+ KVD SD+ SQ VFAGVLVA + +M+LA
Sbjct: 899 LWEPYRPERFYYEVVECGRRVMLTGVVVFIFPNDAAQIAITLLSAFCFFAIFEMVSPYKSDSDMWLSRGGHVIVFFSMFDLLLRKVDVSDEREESQAVFAGVLVAGHVLMVLA 1011
BLAST of mRNA_H-elongata_contig55724.13000.1 vs. uniprot
Match: A0A6H5K0E9_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5K0E9_9PHAE) HSP 1 Score: 127 bits (318), Expect = 1.250e-31 Identity = 58/112 (51.79%), Postives = 83/112 (74.11%), Query Frame = 1
Query: 1 LWQPYRPEMYFYEAVECLRRVFLSGIVVFVFPNTAGQLGTTFLFALLFFVVLMVLNPYSNQRDGWLARIGHAIVMLSMFVALMAKVDTSDDDISSQDVFAGVLVAANCIMIL 336
LW+PY+P +++YE +EC RRV L+G+VVF++PNTA Q+ T L A F ++ L PY+++ D W++R+GH +V LSM+VAL+ KVD SD+ SSQ+VF VLVA + MIL
Sbjct: 1368 LWEPYKPAVFYYEVIECFRRVLLAGVVVFIYPNTAAQIAVTLLIAFAFALLSEGLAPYASRWDTWISRVGHIVVFLSMYVALLLKVDVSDERASSQEVFESVLVAVHVCMIL 1479
BLAST of mRNA_H-elongata_contig55724.13000.1 vs. uniprot
Match: D8LH65_ECTSI (Polymorphic outer membrane protein G/I family protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LH65_ECTSI) HSP 1 Score: 126 bits (317), Expect = 1.420e-31 Identity = 59/112 (52.68%), Postives = 83/112 (74.11%), Query Frame = 1
Query: 1 LWQPYRPEMYFYEAVECLRRVFLSGIVVFVFPNTAGQLGTTFLFALLFFVVLMVLNPYSNQRDGWLARIGHAIVMLSMFVALMAKVDTSDDDISSQDVFAGVLVAANCIMIL 336
LW+PYRP +++YE EC RV L+G+VVF++P+TA Q+ T + A F +V VL+PYS++ D W+ R+GH +V +SMFVAL+ KVD +D+D SSQ VF VLVAA+ M+L
Sbjct: 554 LWKPYRPSVFYYEVFECGWRVLLAGVVVFIYPDTAAQIAVTLMIAFAFVIVSEVLSPYSSKWDRWVNRMGHVVVFVSMFVALLLKVDVADEDASSQKVFESVLVAAHVCMVL 665
BLAST of mRNA_H-elongata_contig55724.13000.1 vs. uniprot
Match: D7G2Z8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G2Z8_ECTSI) HSP 1 Score: 125 bits (315), Expect = 3.130e-31 Identity = 57/111 (51.35%), Postives = 83/111 (74.77%), Query Frame = 1
Query: 1 LWQPYRPEMYFYEAVECLRRVFLSGIVVFVFPNTAGQLGTTFLFALLFFVVLMVLNPYSNQRDGWLARIGHAIVMLSMFVALMAKVDTSDDDISSQDVFAGVLVAANCIMI 333
LW+PYRP +++YE +EC RRV L+G+VVF++PNTA Q+ L A++F ++ L PY+++ D WL R+GHA+V +SM+VAL+ KVD SD+ SSQ VF +LVAA+ M+
Sbjct: 833 LWKPYRPSVFYYEVIECARRVLLAGVVVFIYPNTAAQIAVALLIAVVFAMISEALAPYASRWDTWLCRMGHAVVAVSMYVALLLKVDVSDERASSQRVFESLLVAAHVCMV 943
BLAST of mRNA_H-elongata_contig55724.13000.1 vs. uniprot
Match: D7FHH1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FHH1_ECTSI) HSP 1 Score: 125 bits (314), Expect = 4.270e-31 Identity = 58/113 (51.33%), Postives = 83/113 (73.45%), Query Frame = 1
Query: 1 LWQPYRPEMYFYEAVECLRRVFLSGIVVFVFPNTAGQLGTTFLFALLFFVVLMVLNPYSNQRDGWLARIGHAIVMLSMFVALMAKVDTSDDDISSQDVFAGVLVAANCIMILA 339
LWQPYRP +Y+YE +EC RR+ L+G+VVF++PNTA Q+ T + ++F V+ L PY+ D W++R+ HA+V +S++VAL+ KVD S++ SSQ VF VLVAA+ MILA
Sbjct: 873 LWQPYRPSVYYYEVIECGRRILLTGLVVFIYPNTAAQIAITLIMTVVFAVLSEALRPYAQAWDTWVSRVSHAVVFMSVYVALLLKVDVSNEKGSSQKVFEAVLVAAHACMILA 985
BLAST of mRNA_H-elongata_contig55724.13000.1 vs. uniprot
Match: D7FHG7_ECTSI (LNR domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FHG7_ECTSI) HSP 1 Score: 125 bits (314), Expect = 4.420e-31 Identity = 58/113 (51.33%), Postives = 83/113 (73.45%), Query Frame = 1
Query: 1 LWQPYRPEMYFYEAVECLRRVFLSGIVVFVFPNTAGQLGTTFLFALLFFVVLMVLNPYSNQRDGWLARIGHAIVMLSMFVALMAKVDTSDDDISSQDVFAGVLVAANCIMILA 339
LWQPYRP +Y+YE +EC RR+ L+G+VVF++PNTA Q+ T + ++F V+ L PY+ D W++R+ HA+V +S++VAL+ KVD S++ SSQ VF VLVAA+ MILA
Sbjct: 2611 LWQPYRPSVYYYEVIECGRRILLTGLVVFIYPNTAAQIAITLIMTVVFAVLSEALRPYAQAWDTWVSRVSHAVVFMSVYVALLLKVDVSNEKGSSQKVFEAVLVAAHACMILA 2723
BLAST of mRNA_H-elongata_contig55724.13000.1 vs. uniprot
Match: D7G5Y7_ECTSI (Polymorphic Outer membrane protein G/I family n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G5Y7_ECTSI) HSP 1 Score: 125 bits (313), Expect = 5.990e-31 Identity = 60/112 (53.57%), Postives = 84/112 (75.00%), Query Frame = 1
Query: 1 LWQPYRPEMYFYEAVECLRRVFLSGIVVFVFPNTAGQLGTTFLFALLFFVVLMVLNPYSNQRDGWLARIGHAIVMLSMFVALMAKVDTSDDDISSQDVFAGVLVAANCIMIL 336
LW+PY+P +++YE +EC RRV L+G+VVF++PNTA Q+ T L A F VV L PY+++ D WL+R+GHA+V +SM+VAL+ KVD S++ + SQ VF VLVAA+ MIL
Sbjct: 1923 LWKPYKPSVFYYEVIECGRRVLLAGVVVFIYPNTAPQIAITLLMAFAFVVVSEGLAPYASRWDTWLSRMGHAVVFVSMYVALLLKVDVSNERVESQRVFEVVLVAAHACMIL 2034 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig55724.13000.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig55724.13000.1 >prot_H-elongata_contig55724.13000.1 ID=prot_H-elongata_contig55724.13000.1|Name=mRNA_H-elongata_contig55724.13000.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=106bp MYFYEAVECLRRVFLSGIVVFVFPNTAGQLGTTFLFALLFFVVLMVLNPYback to top mRNA from alignment at H-elongata_contig55724:2901..3242- Legend: UTRCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig55724.13000.1 ID=mRNA_H-elongata_contig55724.13000.1|Name=mRNA_H-elongata_contig55724.13000.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=342bp|location=Sequence derived from alignment at H-elongata_contig55724:2901..3242- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig55724:2901..3242- >mRNA_H-elongata_contig55724.13000.1 ID=mRNA_H-elongata_contig55724.13000.1|Name=mRNA_H-elongata_contig55724.13000.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=636bp|location=Sequence derived from alignment at H-elongata_contig55724:2901..3242- (Himanthalia elongata Himel1 dioecious)back to top |