mRNA_H-elongata_contig5562.12987.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig5562.12987.1
Unique NamemRNA_H-elongata_contig5562.12987.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig5562.12987.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig5562contigH-elongata_contig5562:6148..6824 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size277
Cds size276
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930906.9734375-CDS-H-elongata_contig5562:6147..62041622930906.9734375-CDS-H-elongata_contig5562:6147..6204Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig5562 6148..6204 +
1691679619.6827416-CDS-H-elongata_contig5562:6147..62041691679619.6827416-CDS-H-elongata_contig5562:6147..6204Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig5562 6148..6204 +
1622930907.0008447-CDS-H-elongata_contig5562:6605..68241622930907.0008447-CDS-H-elongata_contig5562:6605..6824Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig5562 6606..6824 +
1691679619.6909597-CDS-H-elongata_contig5562:6605..68241691679619.6909597-CDS-H-elongata_contig5562:6605..6824Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig5562 6606..6824 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig5562.12987.1prot_H-elongata_contig5562.12987.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig5562 6148..6824 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig5562.12987.1

>prot_H-elongata_contig5562.12987.1 ID=prot_H-elongata_contig5562.12987.1|Name=mRNA_H-elongata_contig5562.12987.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=92bp
MASAAELKASNVWRQRLGQRWTPSRKTRGSRGSRKYAPDSAWIEKKNTLT
RDGTAEPVSRDQILRRKRGQGNIFFPVQLTTNRRQRNPVGPY
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mRNA from alignment at H-elongata_contig5562:6148..6824+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig5562.12987.1 ID=mRNA_H-elongata_contig5562.12987.1|Name=mRNA_H-elongata_contig5562.12987.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=677bp|location=Sequence derived from alignment at H-elongata_contig5562:6148..6824+ (Himanthalia elongata Himel1 dioecious)
ATGGCAAGCGCGGCAGAGCTGAAGGCTTCTAATGTCTGGAGGCAGCGACT
GGGGCAGGTGTTACGAAGACTTAATATGGAATATATTGCGGTCTTACCCT
ATCCTTGGAACCGCCTTTGTTAAGTGGGAGTTTCTATACCCACAACTCAA
ATAGAAGTGGCTCCCTGGTATAGCGTTGCGTGTCAGCCACAACGCAAGAT
TCAGACAAGTGACTCATGATACAGCATGTGACTGTATACTATACTATATA
GTACGTGTCCACTGTACCAATAGCGGGTGTGGGAAAATAGAGGCGCACAA
TAATTGGTCCATGGGGTTACCTGAAAAGGCTACACTCGTTACTCAAGCTA
GCTTGAGGACTGTTGTCACTGTCGGCGGACTCTCGGTAGTAAACGCAATC
AGTAAGCAATTACGTGACCTGATGAAATCAGGACTGGCCCGATGACGGTT
GACGGTAGAGATGGACGCCGTCACGGAAAACGAGAGGATCGAGAGGATCC
CGGAAGTACGCACCAGATTCAGCCTGGATTGAGAAGAAGAACACGCTGAC
GCGGGACGGGACGGCCGAACCCGTCTCGCGAGACCAAATTCTCAGGCGCA
AACGGGGACAGGGAAACATATTTTTCCCTGTTCAGCTGACCACAAACAGG
AGGCAACGAAATCCGGTTGGTCCTTAC
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Coding sequence (CDS) from alignment at H-elongata_contig5562:6148..6824+

>mRNA_H-elongata_contig5562.12987.1 ID=mRNA_H-elongata_contig5562.12987.1|Name=mRNA_H-elongata_contig5562.12987.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=552bp|location=Sequence derived from alignment at H-elongata_contig5562:6148..6824+ (Himanthalia elongata Himel1 dioecious)
ATGGCAAGCGCGGCAGAGCTGAAGGCTTCTAATGTCTGGAGGCAGCGACT
GGGGCAGATGGCAAGCGCGGCAGAGCTGAAGGCTTCTAATGTCTGGAGGC
AGCGACTGGGGCAGAGATGGACGCCGTCACGGAAAACGAGAGGATCGAGA
GGATCCCGGAAGTACGCACCAGATTCAGCCTGGATTGAGAAGAAGAACAC
GCTGACGCGGGACGGGACGGCCGAACCCGTCTCGCGAGACCAAATTCTCA
GGCGCAAACGGGGACAGGGAAACATATTTTTCCCTGTTCAGCTGACCACA
AACAGGAGGCAACGAAATCCGGTTGGTCCTTACAGATGGACGCCGTCACG
GAAAACGAGAGGATCGAGAGGATCCCGGAAGTACGCACCAGATTCAGCCT
GGATTGAGAAGAAGAACACGCTGACGCGGGACGGGACGGCCGAACCCGTC
TCGCGAGACCAAATTCTCAGGCGCAAACGGGGACAGGGAAACATATTTTT
CCCTGTTCAGCTGACCACAAACAGGAGGCAACGAAATCCGGTTGGTCCTT
AC
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