mRNA_H-elongata_contig55580.12978.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig55580.12978.1
Unique NamemRNA_H-elongata_contig55580.12978.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig55580.12978.1 vs. uniprot
Match: A0A7S0CS56_MICPS (Hypothetical protein n=1 Tax=Micromonas pusilla TaxID=38833 RepID=A0A7S0CS56_MICPS)

HSP 1 Score: 80.9 bits (198), Expect = 2.360e-15
Identity = 47/119 (39.50%), Postives = 72/119 (60.50%), Query Frame = 1
Query:    1 QLANFWLTVAFAAEMVLKLWALGPRKYVSDRFNIFDGAIVLLSLLELVLTALGSVEGLGGVVSSXXXXXXXXXXXXXXXXXXXRRIITTAGDSLSEMVHIVALLALFIYIFSLLGMELF 357
            ++ N+ +T  FA EM +KL  L PR YV+D+FNIFDG +V++S++EL++T+    +G GG++S+                   R IITT   ++  M  +  +L LFI+IF LLGM+LF
Sbjct:  421 EIVNYVITSYFALEMAVKLVGLTPRGYVADKFNIFDGVVVIVSVVELIITSTTG-DG-GGMLSALRTGRLLRVFKLARSWPQLRNIITTILATIPSMSSLAGMLLLFIFIFDLLGMQLF 537          
BLAST of mRNA_H-elongata_contig55580.12978.1 vs. uniprot
Match: UPI00077A36BF (sodium channel protein 1 brain-like isoform X1 n=3 Tax=Acropora digitifera TaxID=70779 RepID=UPI00077A36BF)

HSP 1 Score: 74.3 bits (181), Expect = 4.640e-13
Identity = 40/119 (33.61%), Postives = 69/119 (57.98%), Query Frame = 1
Query:    1 QLANFWLTVAFAAEMVLKLWALGPRKYVSDRFNIFDGAIVLLSLLELVLTALGSVEGLGGVVSSXXXXXXXXXXXXXXXXXXXRRIITTAGDSLSEMVHIVALLALFIYIFSLLGMELF 357
            +  N   TV F  EMVLKL A GP++Y  +++N+FDGAIV+LS+L++ LT   +++G G  +S                      ++ T G S+  + +I  +LA+ +Y+F+++GM++F
Sbjct:  517 EYCNLVFTVVFIMEMVLKLIAFGPKEYCKNKWNLFDGAIVILSVLDMALTYSNTIDGAG--LSVLRTFRLLRVLKLAQSWKTMGDLLNTIGSSVGAVGNITVILAIIVYMFAVVGMQIF 633          
BLAST of mRNA_H-elongata_contig55580.12978.1 vs. uniprot
Match: C1FFJ7_MICCC (Voltage-gated ion channel superfamily n=1 Tax=Micromonas commoda (strain RCC299 / NOUM17 / CCMP2709) TaxID=296587 RepID=C1FFJ7_MICCC)

HSP 1 Score: 73.2 bits (178), Expect = 1.180e-12
Identity = 43/116 (37.07%), Postives = 67/116 (57.76%), Query Frame = 1
Query:   10 NFWLTVAFAAEMVLKLWALGPRKYVSDRFNIFDGAIVLLSLLELVLTALGSVEGLGGVVSSXXXXXXXXXXXXXXXXXXXRRIITTAGDSLSEMVHIVALLALFIYIFSLLGMELF 357
            N+++T  FA EMV+K+  L  R Y++DRFNIFDG +V++S++EL +      +G GG ++                    R+II T  D++  M  +  +L LFI+IF LLG++LF
Sbjct:  621 NYFVTAYFALEMVMKMIGLKWRAYIADRFNIFDGVVVIISIIELAVA-----DG-GGNLTVLRSFRLLRILKLARSWPQLRKIIATILDTIPSMSSLAGMLFLFIFIFDLLGLQLF 730          
BLAST of mRNA_H-elongata_contig55580.12978.1 vs. uniprot
Match: UPI0009E34887 (sodium channel protein 1 brain-like isoform X1 n=3 Tax=Orbicella faveolata TaxID=48498 RepID=UPI0009E34887)

HSP 1 Score: 72.8 bits (177), Expect = 1.610e-12
Identity = 40/119 (33.61%), Postives = 68/119 (57.14%), Query Frame = 1
Query:    1 QLANFWLTVAFAAEMVLKLWALGPRKYVSDRFNIFDGAIVLLSLLELVLTALGSVEGLGGVVSSXXXXXXXXXXXXXXXXXXXRRIITTAGDSLSEMVHIVALLALFIYIFSLLGMELF 357
            +  N   TV F  EM+LKL A G ++Y  +++N+FDG IV+LS+L++VLT  G++ G G  +S                      ++ T G S+  + +I  +LA+ +Y+F+++GM+LF
Sbjct:  541 EYCNLVFTVVFIMEMILKLIAFGVKEYCKNKWNLFDGTIVILSVLDMVLTYSGAISGAG--LSVLRTFRLLRVLKLAQSWKTMGDLLNTIGSSVGPVGNITVILAIIVYMFAVVGMQLF 657          
BLAST of mRNA_H-elongata_contig55580.12978.1 vs. uniprot
Match: A0A7S3D7G8_9EUKA (Hypothetical protein n=1 Tax=Palpitomonas bilix TaxID=652834 RepID=A0A7S3D7G8_9EUKA)

HSP 1 Score: 72.4 bits (176), Expect = 2.170e-12
Identity = 53/121 (43.80%), Postives = 75/121 (61.98%), Query Frame = 1
Query:    1 QLANFWLTVAFAAEMVLKLWALGPRKYVSDRFNIFDGAIVLLSLLELVLTALGSV--EGLGGVVSSXXXXXXXXXXXXXXXXXXXRRIITTAGDSLSEMVHIVALLALFIYIFSLLGMELF 357
            +  N  LT+ F  EM+LKL  LG R YV D FNIFDG IV+LS++EL++T  GS   +   G++    XXXXXXXXX          I+ +   S+  +  ++ +L +FI+IFSLLGM+L+
Sbjct:  574 ETVNIVLTIVFFLEMMLKLLGLGFRGYVHDTFNIFDGIIVILSMIELIVTNTGSQASDASAGIIPLFRXXXXXXXXXLARSWKGLSAILKSISFSIRSVAPLLIVLIVFIFIFSLLGMQLY 694          
BLAST of mRNA_H-elongata_contig55580.12978.1 vs. uniprot
Match: A0A7S3D7M4_9EUKA (Hypothetical protein n=2 Tax=Palpitomonas bilix TaxID=652834 RepID=A0A7S3D7M4_9EUKA)

HSP 1 Score: 72.4 bits (176), Expect = 2.200e-12
Identity = 53/121 (43.80%), Postives = 75/121 (61.98%), Query Frame = 1
Query:    1 QLANFWLTVAFAAEMVLKLWALGPRKYVSDRFNIFDGAIVLLSLLELVLTALGSV--EGLGGVVSSXXXXXXXXXXXXXXXXXXXRRIITTAGDSLSEMVHIVALLALFIYIFSLLGMELF 357
            +  N  LT+ F  EM+LKL  LG R YV D FNIFDG IV+LS++EL++T  GS   +   G++    XXXXXXXXX          I+ +   S+  +  ++ +L +FI+IFSLLGM+L+
Sbjct:  574 ETVNIVLTIVFFLEMMLKLLGLGFRGYVHDTFNIFDGIIVILSMIELIVTNTGSQASDASAGIIPLFRXXXXXXXXXLARSWKGLSAILKSISFSIRSVAPLLIVLIVFIFIFSLLGMQLY 694          
BLAST of mRNA_H-elongata_contig55580.12978.1 vs. uniprot
Match: K3WVK7_GLOUD (Uncharacterized protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WVK7_GLOUD)

HSP 1 Score: 72.0 bits (175), Expect = 2.800e-12
Identity = 57/116 (49.14%), Postives = 81/116 (69.83%), Query Frame = 1
Query:   10 NFWLTVAFAAEMVLKLWALGPRKYVSDRFNIFDGAIVLLSLLELVLTALGSVEGLGGVVSSXXXXXXXXXXXXXXXXXXXRRIITTAGDSLSEMVHIVALLALFIYIFSLLGMELF 357
            N  LT+ F+ EM  K+  LGPR+Y SD +N+FDG IVL+SL+EL+   +         +S+XXXXXXXXXXXXXXXXXX R ++ T G+S+ ++ +   LL L +Y+F+L+GM+ F
Sbjct:  399 NVVLTIIFSGEMAFKVIGLGPREYCSDNYNLFDGVIVLISLIELLFNFVNPDSKNNTGLSAXXXXXXXXXXXXXXXXXXLRELLVTIGNSILDVANFGLLLLLLMYVFALIGMQFF 514          
BLAST of mRNA_H-elongata_contig55580.12978.1 vs. uniprot
Match: UPI001ED8B30D (voltage-dependent T-type calcium channel subunit alpha-1I n=1 Tax=Ischnura elegans TaxID=197161 RepID=UPI001ED8B30D)

HSP 1 Score: 71.6 bits (174), Expect = 4.130e-12
Identity = 54/119 (45.38%), Postives = 73/119 (61.34%), Query Frame = 1
Query:    1 QLANFWLTVAFAAEMVLKLWALGPRKYVSDRFNIFDGAIVLLSLLELVLTALGSVEGLGGVVSSXXXXXXXXXXXXXXXXXXXRRIITTAGDSLSEMVHIVALLALFIYIFSLLGMELF 357
            +++NF  +  FA EM+LK+ A GP  Y+S+ FN+FDG IV+LS++EL  T LG   G  G+ S    XXXXXXXX        RR +     ++  +    ALL LFI+IFS+LGM LF
Sbjct:  866 EVSNFVFSAIFAVEMMLKITAEGPFGYISNGFNVFDGVIVVLSIVELCQTFLGEKGGSSGL-SVLRTXXXXXXXXLVRFMPNLRRQLFVMLRTMDNVAVFFALLILFIFIFSILGMNLF 983          
BLAST of mRNA_H-elongata_contig55580.12978.1 vs. uniprot
Match: A0A3M6T7T4_POCDA (Sodium channel protein n=5 Tax=Pocilloporidae TaxID=46729 RepID=A0A3M6T7T4_POCDA)

HSP 1 Score: 71.2 bits (173), Expect = 5.550e-12
Identity = 40/116 (34.48%), Postives = 66/116 (56.90%), Query Frame = 1
Query:   10 NFWLTVAFAAEMVLKLWALGPRKYVSDRFNIFDGAIVLLSLLELVLTALGSVEGLGGVVSSXXXXXXXXXXXXXXXXXXXRRIITTAGDSLSEMVHIVALLALFIYIFSLLGMELF 357
            N   TV F  EM+LKL A G ++Y  + +N+FDG IV+LS+L++VLT  G++ G G  +S                      ++ T G S+  + +I  +LA+ +Y+F+++GM+LF
Sbjct:  489 NLVFTVVFIMEMILKLIAFGLKEYCKNSWNLFDGTIVILSILDMVLTYSGAISGAG--LSVLRTFRLLRVLKLAQSWKTMGDLLNTIGSSVGPVGNITVILAIIVYMFAVVGMQLF 602          
BLAST of mRNA_H-elongata_contig55580.12978.1 vs. uniprot
Match: A0A1B6CL99_9HEMI (Ion_trans domain-containing protein (Fragment) n=1 Tax=Clastoptera arizonana TaxID=38151 RepID=A0A1B6CL99_9HEMI)

HSP 1 Score: 69.7 bits (169), Expect = 5.570e-12
Identity = 45/119 (37.82%), Postives = 65/119 (54.62%), Query Frame = 1
Query:    1 QLANFWLTVAFAAEMVLKLWALGPRKYVSDRFNIFDGAIVLLSLLELVLTALGSVEGLGGVVSSXXXXXXXXXXXXXXXXXXXRRIITTAGDSLSEMVHIVALLALFIYIFSLLGMELF 357
            + +N   +  FA EM+LK+ A GP  Y+S+ +N+FDG IV+LS++ELV T LG  EG  G+ S                    RR +     ++  +    +LL LFI+IFS+LGM LF
Sbjct:   60 ETSNIVFSAIFAVEMLLKVLAEGPFGYISNGYNVFDGIIVVLSVIELVQTFLGEGEGSSGL-SVLRTFRLLRILKLVRFMPSLRRQLVVMLRTMDNVAVFFSLLILFIFIFSILGMYLF 177          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig55580.12978.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7S0CS56_MICPS2.360e-1539.50Hypothetical protein n=1 Tax=Micromonas pusilla Ta... [more]
UPI00077A36BF4.640e-1333.61sodium channel protein 1 brain-like isoform X1 n=3... [more]
C1FFJ7_MICCC1.180e-1237.07Voltage-gated ion channel superfamily n=1 Tax=Micr... [more]
UPI0009E348871.610e-1233.61sodium channel protein 1 brain-like isoform X1 n=3... [more]
A0A7S3D7G8_9EUKA2.170e-1243.80Hypothetical protein n=1 Tax=Palpitomonas bilix Ta... [more]
A0A7S3D7M4_9EUKA2.200e-1243.80Hypothetical protein n=2 Tax=Palpitomonas bilix Ta... [more]
K3WVK7_GLOUD2.800e-1249.14Uncharacterized protein n=1 Tax=Globisporangium ul... [more]
UPI001ED8B30D4.130e-1245.38voltage-dependent T-type calcium channel subunit a... [more]
A0A3M6T7T4_POCDA5.550e-1234.48Sodium channel protein n=5 Tax=Pocilloporidae TaxI... [more]
A0A1B6CL99_9HEMI5.570e-1237.82Ion_trans domain-containing protein (Fragment) n=1... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig55580contigH-elongata_contig55580:2095..2934 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score72.8
Seed ortholog evalue1.2e-10
Seed eggNOG ortholog36331.EPrPI00000022391
KEGG koko:K04851,ko:K04857
KEGG TC1.A.1.11.1,1.A.1.11.2,1.A.1.11.20,1.A.1.11.21
KEGG Pathwayko04010,ko04020,ko04022,ko04024,ko04218,ko04260,ko04261,ko04270,ko04530,ko04713,ko04723,ko04724,ko04725,ko04726,ko04727,ko04728,ko04911,ko04912,ko04921,ko04924,ko04925,ko04927,ko04930,ko04934,ko04973,ko05010,ko05031,ko05410,ko05412,ko05414,map04010,map04020,map04022,map04024,map04218,map04260,map04261,map04270,map04530,map04713,map04723,map04724,map04725,map04726,map04727,map04728,map04911,map04912,map04921,map04924,map04925,map04927,map04930,map04934,map04973,map05010,map05031,map05410,map05412,map05414
EggNOG free text desc.Voltage-gated Ion Channel (VIC) Superfamily. Source PGD
EggNOG OGs1MAGS@121069,KOG2301@1,KOG2301@2759
COG Functional cat.PT
Best tax levelPythiales
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko04040
Hectar predicted targeting categorysignal peptide
Exons2
Model size357
Cds size357
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930905.9135704-CDS-H-elongata_contig55580:2094..22171622930905.9135704-CDS-H-elongata_contig55580:2094..2217Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig55580 2095..2217 -
1691679619.309673-CDS-H-elongata_contig55580:2094..22171691679619.309673-CDS-H-elongata_contig55580:2094..2217Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig55580 2095..2217 -
1622930905.9301383-CDS-H-elongata_contig55580:2700..29341622930905.9301383-CDS-H-elongata_contig55580:2700..2934Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig55580 2701..2934 -
1691679619.3213043-CDS-H-elongata_contig55580:2700..29341691679619.3213043-CDS-H-elongata_contig55580:2700..2934Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig55580 2701..2934 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig55580.12978.1prot_H-elongata_contig55580.12978.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig55580 2095..2934 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig55580.12978.1

>prot_H-elongata_contig55580.12978.1 ID=prot_H-elongata_contig55580.12978.1|Name=mRNA_H-elongata_contig55580.12978.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=119bp
QLANFWLTVAFAAEMVLKLWALGPRKYVSDRFNIFDGAIVLLSLLELVLT
ALGSVEGLGGVVSSLRFFRILRVLKLAKSLKSMRRIITTAGDSLSEMVHI
VALLALFIYIFSLLGMELF
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mRNA from alignment at H-elongata_contig55580:2095..2934-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig55580.12978.1 ID=mRNA_H-elongata_contig55580.12978.1|Name=mRNA_H-elongata_contig55580.12978.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=840bp|location=Sequence derived from alignment at H-elongata_contig55580:2095..2934- (Himanthalia elongata Himel1 dioecious)
CAGCTCGCGAACTTCTGGCTGACGGTAGCGTTCGCCGCGGAGATGGTTCT CAAGCTTTGGGCTTTAGGTCCGCGCAAATATGTCTCTGATCGGTTTAACA TCTTTGATGGGGCCATTGTCTTGCTCTCGCTTCTGGAGCTGGTGCTCACC GCTCTGGGGTCGGTAGAGGGACTCGGCGGGGTCGTTTCATCGCTTCGTTT CTTCCGCATCCTTCGAGTGCTGAAGCTGGCTAAGGTACATGTCTTCACGG TTGGCGAGGGGTGGCAAGTGAACATGTGGTACCCGCGGGCGTGGATATCC CCCAGGGGCGCCGCGGTTTTGAGTGGTCATCCACACTGACATCTTCCACA TATTGTGAAATGTCGGAACTAGCGTAATAATCGTTGGACAGACCTCCGAC GTCATCCCAGATCATTACTATGAGACGTCGGAAACTCCATAGTCCCTCAA AACTTCCCCCTGAAGAGTTAATGAGTTGAGGTGTAACACCCATCATGCCA TGCCTTACAACGTTCGTCCAGGTGGCATAAAGAACTTGCTTACCGTACAG GTACTGCTCGAATGTTTGAAGAATGGCGACGCAAATTGCAGAAAATAGAA AGCTTGAAAAGTACCACGTGCTGCATACCGCCGCGATTCCTTTTTCTCCT TCAACAACAACAACAGCAGTAGGATCGCCAATCAATATCCCTCCGTTCGT TGGATTACAATTCACAGTCGTTAAAGTCAATGCGACGCATTATTACCACT GCCGGCGACTCGCTATCGGAGATGGTCCACATCGTGGCACTTTTGGCCCT TTTCATTTATATATTTTCTCTCCTCGGCATGGAACTCTTC
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Coding sequence (CDS) from alignment at H-elongata_contig55580:2095..2934-

>mRNA_H-elongata_contig55580.12978.1 ID=mRNA_H-elongata_contig55580.12978.1|Name=mRNA_H-elongata_contig55580.12978.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=714bp|location=Sequence derived from alignment at H-elongata_contig55580:2095..2934- (Himanthalia elongata Himel1 dioecious)
CAGCTCGCGAACTTCTGGCTGACGGTAGCGTTCGCCGCGGAGATGGTTCT
CAAGCTTTGGGCTTTAGGTCCGCGCAAATATGTCTCTGATCGGTTTAACA
TCTTTGATGGGGCCATTGTCTTGCTCTCGCTTCTGGAGCTGGTGCTCACC
GCTCTGGGGTCGGTAGAGGGACTCGGCGGGGTCGTTTCATCGCTTCGTTT
CTTCCGCATCCTTCGAGTGCTGAAGCTGGCTAAGCAGCTCGCGAACTTCT
GGCTGACGGTAGCGTTCGCCGCGGAGATGGTTCTCAAGCTTTGGGCTTTA
GGTCCGCGCAAATATGTCTCTGATCGGTTTAACATCTTTGATGGGGCCAT
TGTCTTGCTCTCGCTTCTGGAGCTGGTGCTCACCGCTCTGGGGTCGGTAG
AGGGACTCGGCGGGGTCGTTTCATCGCTTCGTTTCTTCCGCATCCTTCGA
GTGCTGAAGCTGGCTAAGTCGTTAAAGTCAATGCGACGCATTATTACCAC
TGCCGGCGACTCGCTATCGGAGATGGTCCACATCGTGGCACTTTTGGCCC
TTTTCATTTATATATTTTCTCTCCTCGGCATGGAACTCTTCTCGTTAAAG
TCAATGCGACGCATTATTACCACTGCCGGCGACTCGCTATCGGAGATGGT
CCACATCGTGGCACTTTTGGCCCTTTTCATTTATATATTTTCTCTCCTCG
GCATGGAACTCTTC
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