mRNA_H-elongata_contig55546.12974.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig55546.12974.1
Unique NamemRNA_H-elongata_contig55546.12974.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig55546.12974.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig55546contigH-elongata_contig55546:1783..2391 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size609
Cds size306
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930905.6479821-CDS-H-elongata_contig55546:1782..20881622930905.6479821-CDS-H-elongata_contig55546:1782..2088Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig55546 1783..2088 +
1691679619.246644-CDS-H-elongata_contig55546:1782..20881691679619.246644-CDS-H-elongata_contig55546:1782..2088Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig55546 1783..2088 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930905.721407-UTR-H-elongata_contig55546:2088..23911622930905.721407-UTR-H-elongata_contig55546:2088..2391Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig55546 2089..2391 +
1691679619.2561245-UTR-H-elongata_contig55546:2088..23911691679619.2561245-UTR-H-elongata_contig55546:2088..2391Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig55546 2089..2391 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig55546.12974.1prot_H-elongata_contig55546.12974.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig55546 1783..2088 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig55546.12974.1

>prot_H-elongata_contig55546.12974.1 ID=prot_H-elongata_contig55546.12974.1|Name=mRNA_H-elongata_contig55546.12974.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=102bp
RSPLGGAYRREWCGSSNSRGCPIESGLSSGVLCNRCDSTSILAPWHCYAS
PGTERGSLEKGGLYHVLWSQAHHAAIPSLAPLLVGPHKLNKSPLGGGCQV
I*
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mRNA from alignment at H-elongata_contig55546:1783..2391+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig55546.12974.1 ID=mRNA_H-elongata_contig55546.12974.1|Name=mRNA_H-elongata_contig55546.12974.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=609bp|location=Sequence derived from alignment at H-elongata_contig55546:1783..2391+ (Himanthalia elongata Himel1 dioecious)
CGCTCGCCGCTTGGTGGAGCATATCGCCGTGAGTGGTGTGGTTCATCAAA
CTCCCGCGGGTGCCCGATAGAGAGTGGGCTGTCGTCAGGCGTTCTTTGCA
ACCGGTGCGATAGCACTTCCATCCTAGCGCCTTGGCATTGTTATGCGAGC
CCAGGCACCGAGCGGGGCTCTCTCGAAAAGGGCGGACTCTATCATGTCCT
CTGGTCGCAGGCTCATCATGCTGCCATCCCAAGCTTGGCTCCCCTTCTCG
TGGGCCCCCATAAGTTGAACAAGAGTCCGCTGGGTGGGGGCTGTCAAGTT
ATATAGCTGATACTGAGCAGAAGGAGAATCATAGAACGATGATTCTTCAT
CAGAGTAGTTAGCCCGCTCATACAGTTGTGTAGGGTCATATCATTACGTA
TGATATAGCCCATATGAAATCAGTCTTCAGGTAAACCACTAAGGTCTTAA
AGAGCCATTCTGGTCTTTACTGACCTTCACTGGTGGTATACTATGCGACG
CATACCCTGACGATACTGACGTACATTGTGTCTCCCCTATGCGGTGCTGT
TAATTAAATATGTTTCTATAAATCCTCTTCCCCAAGACTCTTTACCTTCC
CTCTGGCGA
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Coding sequence (CDS) from alignment at H-elongata_contig55546:1783..2391+

>mRNA_H-elongata_contig55546.12974.1 ID=mRNA_H-elongata_contig55546.12974.1|Name=mRNA_H-elongata_contig55546.12974.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=612bp|location=Sequence derived from alignment at H-elongata_contig55546:1783..2391+ (Himanthalia elongata Himel1 dioecious)
CGCTCGCCGCTTGGTGGAGCATATCGCCGTGAGTGGTGTGGTTCATCAAA
CTCCCGCGGGTGCCCGATAGAGAGTGGGCTGTCGTCAGGCGTTCTTTGCA
ACCGGTGCGATAGCACTTCCATCCTAGCGCCTTGGCATTGTTATGCGAGC
CCAGGCACCGAGCGGGGCTCTCTCGAAAAGGGCGGACTCTATCATGTCCT
CTGGTCGCAGGCTCATCATGCTGCCATCCCAAGCTTGGCTCCCCTTCTCG
TGGGCCCCCATAAGTTGAACAAGAGTCCGCTGGGTGGGGGCTGTCAAGTT
ATATAGCGCTCGCCGCTTGGTGGAGCATATCGCCGTGAGTGGTGTGGTTC
ATCAAACTCCCGCGGGTGCCCGATAGAGAGTGGGCTGTCGTCAGGCGTTC
TTTGCAACCGGTGCGATAGCACTTCCATCCTAGCGCCTTGGCATTGTTAT
GCGAGCCCAGGCACCGAGCGGGGCTCTCTCGAAAAGGGCGGACTCTATCA
TGTCCTCTGGTCGCAGGCTCATCATGCTGCCATCCCAAGCTTGGCTCCCC
TTCTCGTGGGCCCCCATAAGTTGAACAAGAGTCCGCTGGGTGGGGGCTGT
CAAGTTATATAG
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