mRNA_H-elongata_contig55534.12971.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig55534.12971.1 vs. uniprot
Match: D7FWD1_ECTSI (Clathrin heavy chain n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FWD1_ECTSI) HSP 1 Score: 404 bits (1039), Expect = 3.170e-127 Identity = 205/243 (84.36%), Postives = 214/243 (88.07%), Query Frame = 1
Query: 4 AQGLLQIFHPEATSLLKSHTISEPIVFWRWITPMAIALVTASAVFHWSMEGDAGPQKMFNRDAKLEDCQARATFLYDIVIGYNVSADGKWCLAIGIFQAAPGVIAGTMQLYSVDKRVSQILNGHTGTFAKIKIPGRVEEAQARDYRVLCFEEKKMDSPAKLYVMEVGRDKDAPGGVFRLSPQQIPTAADTPNDFPVAMQVSPKQDIIFMITKMGYLFMFDIHSGKALYRAKISEQTIFVTTTQ 732
AQG LQIF+ EA S LKSHTISEPIVFW+W IALVTASAVFHWSM GD+GPQK+FNRDAKLE CQ VIGYNVSADGKWCLA+GI+QA+PGVIAGTMQLYSVDKRVSQILNGHTGTFAKIK+PGR EEAQ VLCFEEKK+DSPAKLYVMEVGRDKDAPGGVFRLSPQQIP AAD PNDFPVAMQVSPK DIIFMITKMGYLFMFDIHSGKALYRAKISEQTIFVTTTQ
Sbjct: 69 AQGQLQIFNLEAKSRLKSHTISEPIVFWKWFDATTIALVTASAVFHWSMGGDSGPQKIFNRDAKLEGCQ---------VIGYNVSADGKWCLAVGIYQASPGVIAGTMQLYSVDKRVSQILNGHTGTFAKIKVPGRAEEAQ-----VLCFEEKKVDSPAKLYVMEVGRDKDAPGGVFRLSPQQIPNAADAPNDFPVAMQVSPKHDIIFMITKMGYLFMFDIHSGKALYRAKISEQTIFVTTTQ 297
BLAST of mRNA_H-elongata_contig55534.12971.1 vs. uniprot
Match: A0A835YZH1_9STRA (Clathrin heavy chain n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YZH1_9STRA) HSP 1 Score: 333 bits (855), Expect = 9.590e-102 Identity = 167/241 (69.29%), Postives = 191/241 (79.25%), Query Frame = 1
Query: 4 AQGLLQIFHPEATSLLKSHTISEPIVFWRWITPMAIALVTASAVFHWSMEGDAGPQKMFNRDAKLEDCQARATFLYDIVIGYNVSADGKWCLAIGIFQAAPGVIAGTMQLYSVDKRVSQILNGHTGTFAKIKIPGRVEEAQARDYRVLCFEEKKMDSPAKLYVMEVGRDKDAPGGVFRLSPQQIPTAADTPNDFPVAMQVSPKQDIIFMITKMGYLFMFDIHSGKALYRAKISEQTIFVTT 726
A G LQIF+ + + +K+HTIS+PI +WRW+ P IALV+A+AV+HWSMEG P K+F+RD KLE Q +IGY+VS D KWCL GI QAAPGVIAGTMQLYSVDKRVSQILNGHTGTFA I PGR AQ VLCFEEKKMDSPAKL++MEVGRDKDAPGGVFR++PQQIP D PNDFPVAM VSP+ DIIFMITK GYLFMFD+H+GKALYRAKIS +T+FVTT
Sbjct: 81 AAGQLQIFNLDTKARVKAHTISDPIQYWRWLDPSTIALVSATAVYHWSMEGADPPAKVFDRDGKLEGSQ---------IIGYSVSMDRKWCLVTGISQAAPGVIAGTMQLYSVDKRVSQILNGHTGTFAVINRPGRDVPAQ-----VLCFEEKKMDSPAKLFIMEVGRDKDAPGGVFRVAPQQIPLPPDAPNDFPVAMNVSPRHDIIFMITKQGYLFMFDVHTGKALYRAKISNETVFVTT 307
BLAST of mRNA_H-elongata_contig55534.12971.1 vs. uniprot
Match: A0A7S2V2C2_9STRA (Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V2C2_9STRA) HSP 1 Score: 315 bits (806), Expect = 2.190e-96 Identity = 153/240 (63.75%), Postives = 182/240 (75.83%), Query Frame = 1
Query: 4 AQGLLQIFHPEATSLLKSHTISEPIVFWRWITPMAIALVTASAVFHWSMEGDAGPQKMFNRDAKLEDCQARATFLYDIVIGYNVSADGKWCLAIGIFQAAPGVIAGTMQLYSVDKRVSQILNGHTGTFAKIKIPGRVEEAQARDYRVLCFEEKKMDSPAKLYVMEVGRDKDAPGGVFRLSPQQIPTAADTPNDFPVAMQVSPKQDIIFMITKMGYLFMFDIHSGKALYRAKISEQTIFVT 723
AQG LQIF+ EA S +KSH +++ +VFWRW+ +A+VTA+AVFHWS+EGD+GP K+F+R A L +I Y VSADGKWCL +GI Q GVI GTMQLYSVD++VSQ+L GHTGTFA IK+PGR + AQ VLCFEEKK+DSP KL++MEVGRDKDAPGGVFR PQQIP + PNDFPVAMQ K D++FMI+KMGYLF+FDIHSGKALYRAKIS IF T
Sbjct: 76 AQGTLQIFNLEARSKMKSHALTDAVVFWRWVDTKTVAVVTATAVFHWSIEGDSGPVKVFDRHASLSTGNQ--------IINYKVSADGKWCLLVGISQHETGVIVGTMQLYSVDRKVSQVLQGHTGTFATIKVPGRADPAQ-----VLCFEEKKLDSPPKLFIMEVGRDKDAPGGVFRPQPQQIPMPNEAPNDFPVAMQAGTKHDVLFMISKMGYLFLFDIHSGKALYRAKISNDPIFTT 302
BLAST of mRNA_H-elongata_contig55534.12971.1 vs. uniprot
Match: A0A7S4DKD8_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4DKD8_HETAK) HSP 1 Score: 291 bits (745), Expect = 1.380e-94 Identity = 145/236 (61.44%), Postives = 176/236 (74.58%), Query Frame = 1
Query: 16 LQIFHPEATSLLKSHTISEPIVFWRWITPMAIALVTASAVFHWSMEGDAGPQKMFNRDAKLEDCQARATFLYDIVIGYNVSADGKWCLAIGIFQAAPGVIAGTMQLYSVDKRVSQILNGHTGTFAKIKIPGRVEEAQARDYRVLCFEEKKMDSPA-KLYVMEVGRDKDAPGGVFRLSPQQIPTAADTPNDFPVAMQVSPKQDIIFMITKMGYLFMFDIHSGKALYRAKISEQTIFV 720
+Q+F+ E+ S +K+H ++E VFWRWI+P I LVT +AV+HW +EGDA P K+F+R A L +I Y VS DGKWCL IGI Q G I GTMQLYS +K VSQ+L+GHTGTFA I++PGR + AQ VLCF EKK DSP KL+VMEVGRDK+APGGVFRL PQ+IP A + PNDFPVAMQ+ K D++FMITKMGYLF+FD+HSGKALYRAKIS +TIFV
Sbjct: 89 VQMFNLESRSKIKAHAMTETCVFWRWISPTVIGLVTPTAVYHWPLEGDATPAKVFDRHASLAAGSQ--------IINYKVSPDGKWCLLIGISQGEGGTIQGTMQLYSAEKGVSQVLSGHTGTFAMIRVPGREDPAQ-----VLCFTEKKADSPTYKLFVMEVGRDKNAPGGVFRLQPQEIPMAREAPNDFPVAMQLGSKHDVLFMITKMGYLFVFDVHSGKALYRAKISNETIFV 311
BLAST of mRNA_H-elongata_contig55534.12971.1 vs. uniprot
Match: A0A024GSW4_9STRA (Uncharacterized protein n=1 Tax=Albugo candida TaxID=65357 RepID=A0A024GSW4_9STRA) HSP 1 Score: 258 bits (658), Expect = 3.280e-82 Identity = 129/241 (53.53%), Postives = 169/241 (70.12%), Query Frame = 1
Query: 4 AQGLLQIFHPEATSLLKSHTISEPIVFWRWITPMAIALVTASAVFHWSMEGDAGPQKMFNRDAKLEDCQARATFLYDIVIGYNVSADGKWCLAIGIFQAAPGVIAGTMQLYSVDKRVSQILNGHTGTFAKIKIPGRVEEAQARDYRVLCFEEKKMDSPAKLYVMEVGRDKDAPGGVFRLSPQQIPTAADTPNDFPVAMQVSPKQDIIFMITKMGYLFMFDIHSGKALYRAKISEQTIFVTT 726
++ LQIF+ E + +KS ++E +VFWRWI+ +IALVTA+AVFHWS+EGD+ P K+F+R A L +I Y S D +W L +GI Q G I G MQLYS++K+VSQ+L GH G+F K+K PGR E D +L F K D P +L++MEVGRDKDAPGGVFRL PQ IP AAD NDFPV++ V+ +DII+MITKMGYLF+FD H+GK +YRA++S+ T+FVTT
Sbjct: 53 SENQLQIFNMELRAKMKSFLMTEAVVFWRWISVNSIALVTATAVFHWSLEGDSPPVKIFDRHANLGAGTQ--------IISYEASQDNQWMLLVGISQGEGGRIVGNMQLYSMEKKVSQVLQGHAGSFTKMKPPGRAE-----DGHILVFAGIKGDGPQQLFIMEVGRDKDAPGGVFRLPPQNIPFAADAQNDFPVSIVVAMDEDIIYMITKMGYLFLFDAHTGKPVYRARVSQDTVFVTT 280
BLAST of mRNA_H-elongata_contig55534.12971.1 vs. uniprot
Match: A0A7S1XLU7_9STRA (Clathrin heavy chain n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1XLU7_9STRA) HSP 1 Score: 275 bits (704), Expect = 2.260e-81 Identity = 139/240 (57.92%), Postives = 173/240 (72.08%), Query Frame = 1
Query: 4 AQGLLQIFHPEATSLLKSHTISEPIVFWRWITPMAIALVTASAVFHWSMEGDAGPQKMFNRDAKLEDCQARATFLYDIVIGYNVSADGKWCLAIGIFQAAPGVIAGTMQLYSVDKRVSQILNGHTGTFAKIKIPGRVEEAQARDYRVLCFEEKKMDSPAKLYVMEVGRDKDAPGGVFRLSPQQIPTAADTPNDFPVAMQVSPKQDIIFMITKMGYLFMFDIHSGKALYRAKISEQTIFVT 723
+Q LQIF+ E + +K+H ++E + FWRW+ IA+VT +AV+HWS+EGDA P K+F+R A+L + + VIGY VSADGKWCL +GI Q A G I GTMQLYS KRVSQ+L GHTG F IK+PGR + AQ VLCFEEKK PAKL+VMEVGRD PG FRL+PQ IP A+ DFPV+M S QDII+MITKMG+L++FD+HSGKA+YRA+IS +TIFVT
Sbjct: 81 SQSQLQIFNLELRTKMKAHAMTEAVKFWRWVNNNTIAIVTPTAVYHWSLEGDASPTKVFDRHAQLAEGKQ--------VIGYEVSADGKWCLLVGISQGAGG-IEGTMQLYSAAKRVSQVLQGHTGCFHTIKVPGREDPAQ-----VLCFEEKKPQQPAKLFVMEVGRDPSLPGEAFRLTPQAIPVPAEAQADFPVSMVASKAQDIIYMITKMGFLYLFDVHSGKAIYRARISTETIFVT 306
BLAST of mRNA_H-elongata_contig55534.12971.1 vs. uniprot
Match: F0XZJ1_AURAN (Clathrin heavy chain n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0XZJ1_AURAN) HSP 1 Score: 275 bits (703), Expect = 3.070e-81 Identity = 139/236 (58.90%), Postives = 170/236 (72.03%), Query Frame = 1
Query: 16 LQIFHPEATSLLKSHTISEPIVFWRWITPMAIALVTASAVFHWSMEGDAGPQKMFNRDAKLEDCQARATFLYDIVIGYNVSADGKWCLAIGIFQAAPGVIAGTMQLYSVDKRVSQILNGHTGTFAKIKIPGRVEEAQARDYRVLCFEEKKMDSPAKLYVMEVGRDKDAPGGVFRLSPQQIPTAADTPNDFPVAMQVSPKQDIIFMITKMGYLFMFDIHSGKALYRAKISEQTIFVT 723
LQIF+ E + +KSH ++E +VFWRW +P IALVT +AVFHWS+EG + P K+ +R A L + VI Y VS D KWCL +GI QAA GVI G MQLYSV+K+VSQ L GH G F + +PGR + AQ VL FEEKK D PAKL+VMEVGRDKDAPGGVFRL+P IP AD PNDFPV+M SPK D+++M+TKMGYL++FD SGKALYRA+I+ T+FVT
Sbjct: 59 LQIFNLELRAKMKSHNMTETVVFWRWTSPNNIALVTPTAVFHWSIEGTSEPVKVLDRHASLGEGTQ--------VINYQVSPDEKWCLLMGISQAAGGVIQGNMQLYSVEKKVSQTLQGHAGCFHSMAVPGRSDPAQ-----VLIFEEKKADQPAKLFVMEVGRDKDAPGGVFRLAPVAIPVPADAPNDFPVSMVPSPKHDVVYMVTKMGYLYLFDCLSGKALYRARITTDTVFVT 281
BLAST of mRNA_H-elongata_contig55534.12971.1 vs. uniprot
Match: A0A7S2WTJ7_9STRA (Hypothetical protein (Fragment) n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2WTJ7_9STRA) HSP 1 Score: 273 bits (697), Expect = 1.970e-80 Identity = 132/237 (55.70%), Postives = 172/237 (72.57%), Query Frame = 1
Query: 16 LQIFHPEATSLLKSHTISEPIVFWRWITPMAIALVTASAVFHWSMEGDAGPQKMFNRDAKLEDCQARATFLYDIVIGYNVSADGKWCLAIGIFQAAPGVIAGTMQLYSVDKRVSQILNGHTGTFAKIKIPGRVEEAQARDYRVLCFEEKKMDSPAKLYVMEVGRDKDAPGGVFRLSPQQIPTAADTPNDFPVAMQVSPKQDIIFMITKMGYLFMFDIHSGKALYRAKISEQTIFVTT 726
LQIF+ E + +K+H ++E +VFWRW +P IALVTA+AV+HWS+EG++ PQK+F+R+ L +I Y +S DG+WCL +GI A G I G MQLYSV+KRVSQ+LNGHTG F I + GR + AQ VLCFEEKK D P+KL+VMEVGRDKDAPGGVF+L P IP D NDFP+AMQ S Q +++M++KMGYL++FDI+S K +YRA+I++ TIFVTT
Sbjct: 90 LQIFNLELRARMKTHNMTEAVVFWRWTSPNNIALVTATAVYHWSIEGESPPQKVFDRNPNLSAAVQ--------IINYQISDDGQWCLLMGIKAGAAGAIDGHMQLYSVEKRVSQVLNGHTGVFCTIPVEGRADPAQ-----VLCFEEKKPDQPSKLFVMEVGRDKDAPGGVFKLVPVPIPVPPDAANDFPIAMQASSTQGVLYMVSKMGYLYLFDIYSAKCIYRARITQGTIFVTT 313
BLAST of mRNA_H-elongata_contig55534.12971.1 vs. uniprot
Match: A0A2D4BEN2_PYTIN (Clathrin heavy chain n=2 Tax=Pythium TaxID=4797 RepID=A0A2D4BEN2_PYTIN) HSP 1 Score: 273 bits (697), Expect = 2.020e-80 Identity = 134/240 (55.83%), Postives = 170/240 (70.83%), Query Frame = 1
Query: 4 AQGLLQIFHPEATSLLKSHTISEPIVFWRWITPMAIALVTASAVFHWSMEGDAGPQKMFNRDAKLEDCQARATFLYDIVIGYNVSADGKWCLAIGIFQAAPGVIAGTMQLYSVDKRVSQILNGHTGTFAKIKIPGRVEEAQARDYRVLCFEEKKMDSPAKLYVMEVGRDKDAPGGVFRLSPQQIPTAADTPNDFPVAMQVSPKQDIIFMITKMGYLFMFDIHSGKALYRAKISEQTIFVT 723
++ LQIF+ E + +KSH ++EP+VFWRWI+ IALVT SAV+HWS++GD+ P KMF+R A L +I Y S DGKW L +GI Q G I G MQLYSV+K+VSQ+LNGH G FA +K PGR + AQ VL F K D+P +L++MEVGRDKDAPGGVFRL PQ IP AAD NDFPV+M VSP +++MITKMGYLF+FD H+GK +YRA++S+ T+FVT
Sbjct: 515 SENQLQIFNMELRAKMKSHLMTEPVVFWRWISVNTIALVTGSAVYHWSLDGDSAPVKMFDRHASLGAGTQ--------IISYEASPDGKWLLLVGIAQGDGGRIVGNMQLYSVEKKVSQVLNGHAGAFASMKPPGRTDXAQ-----VLVFAGTKGDTPQQLFIMEVGRDKDAPGGVFRLPPQAIPFAADAANDFPVSMLVSPSDXVVYMITKMGYLFLFDAHTGKPIYRARVSQDTVFVT 741
BLAST of mRNA_H-elongata_contig55534.12971.1 vs. uniprot
Match: A0A2P4YLB1_9STRA (Clathrin heavy chain (Fragment) n=1 Tax=Phytophthora palmivora var. palmivora TaxID=611791 RepID=A0A2P4YLB1_9STRA) HSP 1 Score: 263 bits (672), Expect = 6.620e-80 Identity = 134/241 (55.60%), Postives = 169/241 (70.12%), Query Frame = 1
Query: 4 AQGLLQIFHPEATSLLKSHTISEPIVFWRWITPMAIALVTASAVFHWSMEGDAGPQKMFNRDAKLEDCQARATFLYDIVIGYNVSADGKWCLAIGIFQAAPGVIAGTMQLYSVDKRVSQILNGHTGTFAKIKIPGRVEEAQARDYRVLCFEEKK-MDSPAKLYVMEVGRDKDAPGGVFRLSPQQIPTAADTPNDFPVAMQVSPKQDIIFMITKMGYLFMFDIHSGKALYRAKISEQTIFVT 723
A+ LQIF+ E + +KSH ++E +VFWRWI+ IALVTASAVFHWS+EGD+ P K+F+R A L +I Y SAD +W L +GI Q G IAG MQLYS++K+VSQ+L GH G FA++K PGR ++AQ VL F K P +L++MEVGRD+DAPGGVFRL PQ IP AAD DFPV+M VSP DI++MITKMGYLF+FD HSGK +YRA++S+ T FVT
Sbjct: 84 AENQLQIFNMELRAKMKSHLMNEAVVFWRWISVNTIALVTASAVFHWSIEGDSPPTKIFDRHANLSSGTQ--------IISYEASADNQWMLLVGISQGEGGRIAGNMQLYSMEKKVSQVLQGHAGAFAQMKPPGRTDDAQ-----VLVFAGTKGAGEPMQLFIMEVGRDRDAPGGVFRLPPQPIPFAADAQADFPVSMLVSPSDDIVYMITKMGYLFLFDAHSGKPVYRARVSQDTTFVT 311 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig55534.12971.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig55534.12971.1 >prot_H-elongata_contig55534.12971.1 ID=prot_H-elongata_contig55534.12971.1|Name=mRNA_H-elongata_contig55534.12971.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=244bp TAQGLLQIFHPEATSLLKSHTISEPIVFWRWITPMAIALVTASAVFHWSMback to top mRNA from alignment at H-elongata_contig55534:364..3830- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig55534.12971.1 ID=mRNA_H-elongata_contig55534.12971.1|Name=mRNA_H-elongata_contig55534.12971.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=3467bp|location=Sequence derived from alignment at H-elongata_contig55534:364..3830- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig55534:364..3830- >mRNA_H-elongata_contig55534.12971.1 ID=mRNA_H-elongata_contig55534.12971.1|Name=mRNA_H-elongata_contig55534.12971.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1464bp|location=Sequence derived from alignment at H-elongata_contig55534:364..3830- (Himanthalia elongata Himel1 dioecious)back to top |