mRNA_H-elongata_contig55528.12970.1 (mRNA) Himanthalia elongata Himel1 dioecious
|
Overview
Homology
BLAST of mRNA_H-elongata_contig55528.12970.1 vs. uniprot
Match: D7G5M6_ECTSI (Delta-1-pyrroline-5-carboxylate synthase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G5M6_ECTSI) HSP 1 Score: 273 bits (699), Expect = 8.130e-86 Identity = 142/186 (76.34%), Postives = 157/186 (84.41%), Query Frame = 1
Query: 1 LIRKITAPIGVLLVVFESRPDSLPQIASLAIRSGNGLLLKGGKEAEHSNKCLHRIIVDAVAEGSVGRVPRDCIGLVTSRAAVGELLKLDHLIDLVIPRGSGKLVNTIKAWEGRGRGSLVNYPSACNAAETILVHEDCVVGDSSIFTQVLNALHGAGVTVLGGPVALRLGIVDKDKASPGFKTEYGE 558
++++IT+PIGVLL+VFESRPDSLPQIASLAIRSGNGLLLKGGKEAEHSN CLHRIIVDAVAEGS GRVPRDCIGLVTSRAAVGELLKLDHLIDLVIPRGSG LVN IK VNYPSACNAAETIL+H+ + + +QV+ ALH AGVTVLGGP A+ LG+V DK SPGFKTEYG+
Sbjct: 328 VLKQITSPIGVLLIVFESRPDSLPQIASLAIRSGNGLLLKGGKEAEHSNACLHRIIVDAVAEGSKGRVPRDCIGLVTSRAAVGELLKLDHLIDLVIPRGSGSLVNHIK----------VNYPSACNAAETILIHKALLEEGAGTCSQVVRALHSAGVTVLGGPRAVDLGVVGGDKISPGFKTEYGD 503
BLAST of mRNA_H-elongata_contig55528.12970.1 vs. uniprot
Match: A0A6H5JBC7_9PHAE (Delta-1-pyrroline-5-carboxylate synthase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JBC7_9PHAE) HSP 1 Score: 267 bits (682), Expect = 1.830e-81 Identity = 145/212 (68.40%), Postives = 159/212 (75.00%), Query Frame = 1
Query: 1 LIRKITAPIGVLLVVFESRPDSLPQIASLAIRSGNGLLLKGGKEAEHSNKCLHRIIVDAVAEGSVGRVPRDCIGLVTSRAAVGELLKLDHLIDLVIPRGSGKLVNTIKAWE-----GRGRG---------------------SLVNYPSACNAAETILVHEDCVVGDSSIFTQVLNALHGAGVTVLGGPVALRLGIVDKDKASPGFKTEYGE 558
++++IT+PIGVLL+VFESRPDSLPQIASLAIRSGNGLLLKGGKEAEHSN CLHRIIVDAVAEGS GRVPRDCIGLVTSRAAVGELLKLDHLIDLVIPRGSG LVN IKA G G + VNYPSACNAAETIL+H+ + + QV+ ALH GVTVLGGP A+ LG+V DK SPGFKTEYGE
Sbjct: 507 VLKQITSPIGVLLIVFESRPDSLPQIASLAIRSGNGLLLKGGKEAEHSNACLHRIIVDAVAEGSKGRVPRDCIGLVTSRAAVGELLKLDHLIDLVIPRGSGSLVNHIKASTKIPVMGHSEGICHVYIDKAADPTKAVEIAVDAKVNYPSACNAAETILIHKALLEEGAGTCAQVVRALHSTGVTVLGGPRAVDLGVVGGDKISPGFKTEYGE 718
BLAST of mRNA_H-elongata_contig55528.12970.1 vs. uniprot
Match: A0A835ZBW4_9STRA (Delta-1-pyrroline-5-carboxylate synthase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZBW4_9STRA) HSP 1 Score: 213 bits (541), Expect = 1.660e-61 Identity = 121/212 (57.08%), Postives = 144/212 (67.92%), Query Frame = 1
Query: 1 LIRKITAPIGVLLVVFESRPDSLPQIASLAIRSGNGLLLKGGKEAEHSNKCLHRIIVDAVAEGSVGRVPRDCIGLVTSRAAVGELLKLDHLIDLVIPRGSGKLVNTIKAWE-----GRGRG---------------------SLVNYPSACNAAETILVHEDCVVGDSSIFTQVLNALHGAGVTVLGGPVALRLGIVDKDKASPGFKTEYGE 558
+++++T PIGVLLVVFESRPDSLPQIASLA+RSGNGLLLKGGKEAEHSN CLH II DAV E + GRV R+ IGLV R AV ELLKLD LIDLVIPRGSG+LVN IK+ G G + +NYP+ACNA ET+LVH+DCV + + +V +AL AG VLGGP A+ G+ + +P FKTEYGE
Sbjct: 443 VLKQVTTPIGVLLVVFESRPDSLPQIASLALRSGNGLLLKGGKEAEHSNACLHGIIADAVFESTGGRVCREVIGLVVGRQAVAELLKLDALIDLVIPRGSGELVNRIKSTTKIPVLGHAEGVCHMFIDTAADEAKAIALAVDAKINYPAACNALETLLVHQDCVA--TGLAKKVADALVSAGGKVLGGPRAIAAGLATEP--TPSFKTEYGE 650
BLAST of mRNA_H-elongata_contig55528.12970.1 vs. uniprot
Match: A0A1W0A8G2_9STRA (Delta-1-pyrroline-5-carboxylate synthase n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1W0A8G2_9STRA) HSP 1 Score: 195 bits (495), Expect = 3.700e-55 Identity = 112/211 (53.08%), Postives = 137/211 (64.93%), Query Frame = 1
Query: 1 LIRKITAPIGVLLVVFESRPDSLPQIASLAIRSGNGLLLKGGKEAEHSNKCLHRIIVDAVAEGSVGRVPRDCIGLVTSRAAVGELLKLDHLIDLVIPRGSGKLVNTIKAWE-----GRGRG----------------SLV-----NYPSACNAAETILVHEDCVVGDSSIFTQVLNALHGAGVTVLGGPVALRLGIVDKDKASPGFKTEYG 555
++ ++T PIGVLL+VFESRPDSLPQIA+LA+RSGNGLLLKGGKEA HSN CLH++I DA+ + GRVPR IGLVT+R V ELLKLDH+IDL IPRGS LV IK G G SLV +YP+ACNA ET+LV D V DS +++ALH AGV +L GP A LG++ + +A+P EYG
Sbjct: 398 VLEQLTCPIGVLLIVFESRPDSLPQIAALALRSGNGLLLKGGKEASHSNACLHKLIGDAIESETQGRVPRGVIGLVTTRDDVSELLKLDHVIDLCIPRGSNSLVTYIKKNTRIPVLGHAEGVCHMYIHSGANMEKAKSLVVDAKTDYPAACNALETLLV--DKVHVDSGAIQSIIDALHDAGVKILVGPTAASLGVLPEAEAAPSLSHEYG 606
BLAST of mRNA_H-elongata_contig55528.12970.1 vs. uniprot
Match: A0A7S2UVN0_9STRA (Glutamate-5-semialdehyde dehydrogenase n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2UVN0_9STRA) HSP 1 Score: 186 bits (471), Expect = 4.150e-55 Identity = 106/192 (55.21%), Postives = 124/192 (64.58%), Query Frame = 1
Query: 58 PDSLPQIASLAIRSGNGLLLKGGKEAEHSNKCLHRIIVDAVAEGSVGRVPRDCIGLVTSRAAVGELLKLDHLIDLVIPRGSGKLVNTIKAWE-----GRGRG---------------------SLVNYPSACNAAETILVHEDCVVGDSSIFTQVLNALHGAGVTVLGGPVALRLGIVDKDKASPGFKTEYG 555
PDSLPQIASLA+RSGNGLLLKGG+EAEHSN+ LHR+IVDAV + G+V R+ IGLV SR+ V ELLKLD +IDLVIPRGSG LV +IK+ G G S NYP+ACNAAETIL HED V + + +VL L AGV VLGGP+A+ G+VD FKTEYG
Sbjct: 1 PDSLPQIASLALRSGNGLLLKGGREAEHSNRALHRVIVDAVHSATGGKVSREVIGLVQSRSEVAELLKLDDVIDLVIPRGSGALVRSIKSGTRIPVLGHAEGICHVYVDKQADLKKAVALCVDSKTNYPAACNAAETILFHEDTVA--TGVANEVLRGLRQAGVQVLGGPLAISQGLVDARAPVETFKTEYG 190
BLAST of mRNA_H-elongata_contig55528.12970.1 vs. uniprot
Match: A0A7S2BH10_9STRA (Delta-1-pyrroline-5-carboxylate synthase n=2 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2BH10_9STRA) HSP 1 Score: 191 bits (486), Expect = 9.220e-54 Identity = 108/209 (51.67%), Postives = 133/209 (63.64%), Query Frame = 1
Query: 10 KITAPIGVLLVVFESRPDSLPQIASLAIRSGNGLLLKGGKEAEHSNKCLHRIIVDAVAEGSVGRVPRDCIGLVTSRAAVGELLKLDHLIDLVIPRGSGKLVNTIKAWE-----GRGRG---------------------SLVNYPSACNAAETILVHEDCVVGDSSIFTQVLNALHGAGVTVLGGPVALRLGIVDKDKASPGFKTEYGE 558
+++ PIGVLL+VFESRPDSLPQIASLA+ SGNGLLLKGGKEAEHSN LH+++VDAVA S G+VPR+ +GLVTSR V +LLKLD LIDLVIPRGS LV IK G G +NYP+ACNA ET+L+H+ V DS V+ L AGV++ GGP A+ G++D A+ EYG+
Sbjct: 425 QLSVPIGVLLIVFESRPDSLPQIASLALLSGNGLLLKGGKEAEHSNYTLHKVVVDAVAAASDGKVPREIVGLVTSRTQVSDLLKLDRLIDLVIPRGSKALVTNIKKNTRIPVLGHADGICHTYIDQHADDVKAAAIAVDGKINYPAACNATETVLIHQAKV--DSGGCATVMRELRKAGVSLKGGPNAIAQGLIDMSCAAKSLSVEYGD 631
BLAST of mRNA_H-elongata_contig55528.12970.1 vs. uniprot
Match: W7U194_9STRA (Delta-1-pyrroline-5-carboxylate synthase n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7U194_9STRA) HSP 1 Score: 191 bits (484), Expect = 2.080e-53 Identity = 106/207 (51.21%), Postives = 134/207 (64.73%), Query Frame = 1
Query: 16 TAPIGVLLVVFESRPDSLPQIASLAIRSGNGLLLKGGKEAEHSNKCLHRIIVDAVAEGSVGRVPRDCIGLVTSRAAVGELLKLDHLIDLVIPRGSGKLVNTIKAWE-----GRGRG---------------------SLVNYPSACNAAETILVHEDCVVGDSSIFTQVLNALHGAGVTVLGGPVALRLGIVDKDKASPGFKTEYGE 558
T PIGVLL+VFESRPDSLPQIA+LA+RSGNGLLLKGGKEA HSN+ LHR+I DA+ S GRVP + IGLVT+R+ V LL+LD +IDLVIPRGS LV +IK+ G G + +YP+ACNA ET+L+H V + +++L AL AGVTVLGGP A++ G+V A+ + EYG+
Sbjct: 440 TVPIGVLLIVFESRPDSLPQIAALALRSGNGLLLKGGKEALHSNQVLHRVITDAMTTASEGRVPAEAIGLVTTRSEVSALLELDDVIDLVIPRGSSALVRSIKSSTRIPVLGHAEGVCHIYVDKGADLRKAARIVVDAKTDYPAACNAVETLLLHRSFVADGAIGASKLLRALMSAGVTVLGGPEAVKEGLVSPGHAAKDLRQEYGD 646
BLAST of mRNA_H-elongata_contig55528.12970.1 vs. uniprot
Match: A0A7S4S1J2_9STRA (Glutamate-5-semialdehyde dehydrogenase n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S4S1J2_9STRA) HSP 1 Score: 179 bits (454), Expect = 2.100e-50 Identity = 104/208 (50.00%), Postives = 130/208 (62.50%), Query Frame = 1
Query: 13 ITAPIGVLLVVFESRPDSLPQIASLAIRSGNGLLLKGGKEAEHSNKCLHRIIVDAVAEGSVGRVPRDCIGLVTSRAAVGELLKLDHLIDLVIPRGSGKLVNTIKAWE-----GRGRG---------------------SLVNYPSACNAAETILVHEDCVVGDSSIFTQVLNALHGAGVTVLGGPVALRLGIVDKDKASPGFKTEYGE 558
IT PIGVL+++FESRPDSLPQI++LA+ SGNGLLLKGGKEA HSN LHR+I DA+ GS G V RD I LVTSR V ++L LD +IDLVIPRGS LV+ IKA G G + ++YPSACNA ET+L+H+D + +++ VL L AGV LGGP A+++GI D K EYG+
Sbjct: 213 ITVPIGVLMIIFESRPDSLPQISALALASGNGLLLKGGKEAVHSNAALHRVIGDAIESGSGGNVKRDIIALVTSRGQVADMLGLDDVIDLVIPRGSNALVSYIKANTRIPVLGHADGVCHVYVDKSAKSEDATKLVVDAKIDYPSACNAMETLLLHKDTI--GNTVAMNVLMGLRRAGVKCLGGPRAMKMGICDVPAEQ--MKCEYGD 416
BLAST of mRNA_H-elongata_contig55528.12970.1 vs. uniprot
Match: A0A7S2WAW7_9STRA (Delta-1-pyrroline-5-carboxylate synthase n=2 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2WAW7_9STRA) HSP 1 Score: 182 bits (462), Expect = 2.350e-50 Identity = 105/212 (49.53%), Postives = 129/212 (60.85%), Query Frame = 1
Query: 1 LIRKITAPIGVLLVVFESRPDSLPQIASLAIRSGNGLLLKGGKEAEHSNKCLHRIIVDAVAEGSVGRVPRDCIGLVTSRAAVGELLKLDHLIDLVIPRGSGKLVNTIKAWE-----GRGRG---------------------SLVNYPSACNAAETILVHEDCVVGDSSIFTQVLNALHGAGVTVLGGPVALRLGIVDKDKASPGFKTEYGE 558
++ K+T PIGVLL++FESRPDSLPQIA+LAIRSGNGLLLKGG+EAEHSN LHRIIV AV + G+V +D + LVTSR V LL LD IDLV+PRGS LV IK G G S +YP+ACNAAETIL+HE ++ +L L AGVT+ GG A+ LG++ A+ TEYG+
Sbjct: 420 ILSKVTVPIGVLLIIFESRPDSLPQIAALAIRSGNGLLLKGGREAEHSNATLHRIIVTAVQTATAGKVSQDLVSLVTSREQVSSLLALDDCIDLVVPRGSKALVEHIKQHTRIPVLGHADGICHVFVDESADLEKAVDIAIDSKTDYPAACNAAETILIHEAAA---ETMGGTILGGLRRAGVTIKGGARAVALGMIPHSDAAESMSTEYGD 628
BLAST of mRNA_H-elongata_contig55528.12970.1 vs. uniprot
Match: A0A6G0WZZ7_9STRA (Delta-1-pyrroline-5-carboxylate synthase n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0WZZ7_9STRA) HSP 1 Score: 179 bits (455), Expect = 1.740e-49 Identity = 103/211 (48.82%), Postives = 130/211 (61.61%), Query Frame = 1
Query: 1 LIRKITAPIGVLLVVFESRPDSLPQIASLAIRSGNGLLLKGGKEAEHSNKCLHRIIVDAVAEGSVGRVPRDCIGLVTSRAAVGELLKLDHLIDLVIPRGSGKLVNTIKAWE-----GRGRG---------------------SLVNYPSACNAAETILVHEDCVVGDSSIFTQVLNALHGAGVTVLGGPVALRLGIVDKDKASPGFKTEYG 555
++ ++T PIGV+LVVFESRPDSLPQIA+LA+RSGNGL+LKGGKEA HSN CLH ++ A+ E + GRVP IGLVTSR VG LL LDH+IDL IPRGS LV IK G G + +YP+ACNA ET+++ E+ VV S + +L+AL AGVT+ GP A R ++ A+P EYG
Sbjct: 395 VLEQVTTPIGVILVVFESRPDSLPQIAALALRSGNGLILKGGKEARHSNACLHSLVQAAIREETKGRVPESVIGLVTSRDDVGALLALDHVIDLCIPRGSNSLVTHIKKNTKIPVLGHAEGVCHMYIHAKADIAKAARLAVDAKTDYPAACNALETLVLDEEVVV--SGAHSSILSALADAGVTLHVGPEAARRQLIPHAPAAPSLSHEYG 603 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig55528.12970.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig55528.12970.1 >prot_H-elongata_contig55528.12970.1 ID=prot_H-elongata_contig55528.12970.1|Name=mRNA_H-elongata_contig55528.12970.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=186bp LIRKITAPIGVLLVVFESRPDSLPQIASLAIRSGNGLLLKGGKEAEHSNKback to top mRNA from alignment at H-elongata_contig55528:886..3832- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig55528.12970.1 ID=mRNA_H-elongata_contig55528.12970.1|Name=mRNA_H-elongata_contig55528.12970.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=2947bp|location=Sequence derived from alignment at H-elongata_contig55528:886..3832- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig55528:886..3832- >mRNA_H-elongata_contig55528.12970.1 ID=mRNA_H-elongata_contig55528.12970.1|Name=mRNA_H-elongata_contig55528.12970.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1116bp|location=Sequence derived from alignment at H-elongata_contig55528:886..3832- (Himanthalia elongata Himel1 dioecious)back to top |