mRNA_H-elongata_contig55519.12969.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig55519.12969.1
Unique NamemRNA_H-elongata_contig55519.12969.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig55519.12969.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig55519contigH-elongata_contig55519:2734..3116 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size383
Cds size381
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930904.806407-UTR-H-elongata_contig55519:2733..27351622930904.806407-UTR-H-elongata_contig55519:2733..2735Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig55519 2734..2735 +
1691679618.9020371-UTR-H-elongata_contig55519:2733..27351691679618.9020371-UTR-H-elongata_contig55519:2733..2735Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig55519 2734..2735 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930904.8531618-CDS-H-elongata_contig55519:2735..31161622930904.8531618-CDS-H-elongata_contig55519:2735..3116Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig55519 2736..3116 +
1691679618.9114852-CDS-H-elongata_contig55519:2735..31161691679618.9114852-CDS-H-elongata_contig55519:2735..3116Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig55519 2736..3116 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig55519.12969.1prot_H-elongata_contig55519.12969.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig55519 2736..3116 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig55519.12969.1

>prot_H-elongata_contig55519.12969.1 ID=prot_H-elongata_contig55519.12969.1|Name=mRNA_H-elongata_contig55519.12969.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=127bp
MAGLSPSPNQFSSPSRTPFSSFGISPVPTDDDDSVLRRSSKSPPARRQIR
HVFSCPPSGGSSSSCRGGDGNPSSGSNGAQVRREGALNPATSFDDGNLSA
FSLPLLEDDVSAKSVGVVAHEATTKIR
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mRNA from alignment at H-elongata_contig55519:2734..3116+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig55519.12969.1 ID=mRNA_H-elongata_contig55519.12969.1|Name=mRNA_H-elongata_contig55519.12969.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=383bp|location=Sequence derived from alignment at H-elongata_contig55519:2734..3116+ (Himanthalia elongata Himel1 dioecious)
TGATGGCGGGTCTATCTCCGTCGCCGAATCAGTTTTCGTCTCCGTCTCGA
ACTCCTTTTAGCTCATTCGGCATCAGTCCCGTTCCCACCGACGACGATGA
CTCTGTCTTGAGGCGCTCATCCAAGAGCCCGCCAGCGCGGCGACAAATTC
GGCATGTTTTCTCCTGCCCCCCCAGCGGCGGGTCGAGCTCCTCCTGCCGT
GGCGGCGATGGAAACCCTTCTTCTGGAAGTAACGGTGCGCAGGTCCGCCG
CGAAGGTGCCTTGAATCCAGCGACTTCTTTTGACGATGGAAACCTGTCGG
CGTTTTCCTTGCCACTGTTAGAGGATGACGTCAGCGCCAAGAGCGTAGGC
GTCGTTGCTCACGAAGCAACAACCAAGATAAGG
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Coding sequence (CDS) from alignment at H-elongata_contig55519:2734..3116+

>mRNA_H-elongata_contig55519.12969.1 ID=mRNA_H-elongata_contig55519.12969.1|Name=mRNA_H-elongata_contig55519.12969.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=762bp|location=Sequence derived from alignment at H-elongata_contig55519:2734..3116+ (Himanthalia elongata Himel1 dioecious)
ATGGCGGGTCTATCTCCGTCGCCGAATCAGTTTTCGTCTCCGTCTCGAAC
TCCTTTTAGCTCATTCGGCATCAGTCCCGTTCCCACCGACGACGATGACT
CTGTCTTGAGGCGCTCATCCAAGAGCCCGCCAGCGCGGCGACAAATTCGG
CATGTTTTCTCCTGCCCCCCCAGCGGCGGGTCGAGCTCCTCCTGCCGTGG
CGGCGATGGAAACCCTTCTTCTGGAAGTAACGGTGCGCAGGTCCGCCGCG
AAGGTGCCTTGAATCCAGCGACTTCTTTTGACGATGGAAACCTGTCGGCG
TTTTCCTTGCCACTGTTAGAGGATGACGTCAGCGCCAAGAGCGTAGGCGT
CGTTGCTCACGAAGCAACAACCAAGATAAGGATGGCGGGTCTATCTCCGT
CGCCGAATCAGTTTTCGTCTCCGTCTCGAACTCCTTTTAGCTCATTCGGC
ATCAGTCCCGTTCCCACCGACGACGATGACTCTGTCTTGAGGCGCTCATC
CAAGAGCCCGCCAGCGCGGCGACAAATTCGGCATGTTTTCTCCTGCCCCC
CCAGCGGCGGGTCGAGCTCCTCCTGCCGTGGCGGCGATGGAAACCCTTCT
TCTGGAAGTAACGGTGCGCAGGTCCGCCGCGAAGGTGCCTTGAATCCAGC
GACTTCTTTTGACGATGGAAACCTGTCGGCGTTTTCCTTGCCACTGTTAG
AGGATGACGTCAGCGCCAAGAGCGTAGGCGTCGTTGCTCACGAAGCAACA
ACCAAGATAAGG
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