mRNA_H-elongata_contig55441.12958.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig55441.12958.1
Unique NamemRNA_H-elongata_contig55441.12958.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
[Close]
BLAST of mRNA_H-elongata_contig55441.12958.1 vs. uniprot
Match: A0A6H5K7B9_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5K7B9_9PHAE)

HSP 1 Score: 273 bits (698), Expect = 5.170e-90
Identity = 143/199 (71.86%), Postives = 168/199 (84.42%), Query Frame = 1 
Query:    1 QLVMNYLIVEGYRDAAERFLQESGTEPKVDLRTIEDRVAIRKAMMEGDVVKAMRLANEMDPMMLDGDRDLRFGLLKQRLLELVRRGETEEALNFAAECLAPESAGNPEMRRQVEEVITLLAFEDVTKCPLSEMLDIEQRQVAASRLNAAVLQSQQQEKGPWLPDLLRQLVHMQARCRWSGRSLAETVEFPRIEGIDGTK 597
            +LVMNYL+VEGYRDAAE F++ESGT+ KVDL TIE+RVAIRKAMM+G+VV+AM+LAN++DP MLD DR+LRFGLLKQRLLELVRRG+ +EAL+FAAE LAPE A +P + RQ+EE +TLLAFED T  PLS +LD+EQR  AA RLNAAVLQSQQQE GPWLPDLLRQLV+ Q        +L+E VEFPRIEGI GTK
Sbjct:   47 ELVMNYLVVEGYRDAAEHFVEESGTDAKVDLTTIEERVAIRKAMMQGNVVEAMKLANDLDPTMLDRDRELRFGLLKQRLLELVRRGDADEALSFAAEHLAPEGAQDPAILRQIEEAVTLLAFEDATSSPLSGLLDMEQRHAAAGRLNAAVLQSQQQETGPWLPDLLRQLVYTQ-------NALSERVEFPRIEGIGGTK 238
[Close]
BLAST of mRNA_H-elongata_contig55441.12958.1 vs. uniprot
Match: A0A1Y1Y6B0_9FUNG (Uncharacterized protein n=2 Tax=Basidiobolus meristosporus CBS 931.73 TaxID=1314790 RepID=A0A1Y1Y6B0_9FUNG)

HSP 1 Score: 182 bits (461), Expect = 1.730e-54
Identity = 96/195 (49.23%), Postives = 130/195 (66.67%), Query Frame = 1 
Query:    1 QLVMNYLIVEGYRDAAERFLQESGTEPKVDLRTIEDRVAIRKAMMEGDVVKAMRLANEMDPMMLDGDRDLRFGLLKQRLLELVRRGETEEALNFAAECLAPESAGNPEMRRQVEEVITLLAFEDVTKCPLSEMLDIEQRQVAASRLNAAVLQSQQQEKGPWLPDLLRQLVHMQARCRWSGRSLAETVEFPRIEGI 585
            +LVMNYL++EGY+DAAE+F QE G  P +DL +IEDR+ IR A+  GD+ +A+   N++DP +LD +  L F L +QRL+EL+R+G  +EAL FA E LAP    NPEM +++E+ + LLAFED+ K P+ E+LD   RQ  AS LNAA+L SQ Q+K P LP LL+ LV       W+   L E   +PRI   
Sbjct:   31 KLVMNYLVIEGYKDAAEKFSQECGLSPNIDLTSIEDRMNIRNAVHSGDIGEAVERVNDLDPEILDTNPKLFFHLQQQRLIELIRKGNVDEALEFAQEELAPRGEENPEMLQELEQTMALLAFEDLNKSPVGELLDHTHRQKTASELNAAILTSQSQDKDPKLPGLLKMLV-------WAQNQLDEKTNYPRINNF 218
[Close]
BLAST of mRNA_H-elongata_contig55441.12958.1 vs. uniprot
Match: A0A6A6LUI4_HEVBR (Uncharacterized protein n=1 Tax=Hevea brasiliensis TaxID=3981 RepID=A0A6A6LUI4_HEVBR)

HSP 1 Score: 178 bits (451), Expect = 1.050e-52
Identity = 95/195 (48.72%), Postives = 127/195 (65.13%), Query Frame = 1 
Query:    1 QLVMNYLIVEGYRDAAERFLQESGTEPKVDLRTIEDRVAIRKAMMEGDVVKAMRLANEMDPMMLDGDRDLRFGLLKQRLLELVRRGETEEALNFAAECLAPESAGNPEMRRQVEEVITLLAFEDVTKCPLSEMLDIEQRQVAASRLNAAVLQSQQQEKGPWLPDLLRQLVHMQARCRWSGRSLAETVEFPRIEGI 585
            +LVMN+L+ EGY DAAE+F  ESGTEP +DL TI DR+A++KA+  G+V  A+   N+++P +LD +  L F L +QRL+EL+R G+ EEAL FA E LAP    N     ++E  + LLAFEDVT CP+ E+LDI QR   AS +NAA+L SQ  EK P LP LL+ L+       W+   L E   +PRI  +
Sbjct:   50 KLVMNFLVTEGYVDAAEKFRMESGTEPDIDLATITDRMAVKKAVQCGNVEDAIEKVNDLNPEILDTNPQLFFHLQQQRLIELIRNGKVEEALEFAQEELAPRGEENQSFLEELERTVALLAFEDVTNCPVGELLDISQRLKTASEVNAAILTSQSHEKDPKLPSLLKMLI-------WAQNQLDEKAAYPRISNL 237
[Close]
BLAST of mRNA_H-elongata_contig55441.12958.1 vs. uniprot
Match: D8QSL2_SELML (Uncharacterized protein n=1 Tax=Selaginella moellendorffii TaxID=88036 RepID=D8QSL2_SELML)

HSP 1 Score: 177 bits (448), Expect = 1.800e-52
Identity = 96/195 (49.23%), Postives = 127/195 (65.13%), Query Frame = 1 
Query:    1 QLVMNYLIVEGYRDAAERFLQESGTEPKVDLRTIEDRVAIRKAMMEGDVVKAMRLANEMDPMMLDGDRDLRFGLLKQRLLELVRRGETEEALNFAAECLAPESAGNPEMRRQVEEVITLLAFEDVTKCPLSEMLDIEQRQVAASRLNAAVLQSQQQEKGPWLPDLLRQLVHMQARCRWSGRSLAETVEFPRIEGI 585
            +LVMN+L+ EGY DAAE+F  ESGT P+VDL +I DR+A+RKA+  G+V  A+   N+++P +LD +  L F L +QRL+EL+R G+ EEAL FA E LAP    N     ++E  + LLAFED + CP+ ++LD  QRQ  AS LNAA+L SQ  EK P LP LL+ L+       WS   L E V +PRI  I
Sbjct:   33 KLVMNFLVTEGYVDAAEKFQHESGTSPEVDLGSITDRMAVRKAVQCGNVEDAIEKVNDLNPEILDTNPQLFFHLQQQRLIELIRSGKLEEALEFAQEELAPRGEENHSFLEELERTVALLAFEDTSNCPVGDLLDFSQRQKTASELNAAILTSQSHEKDPKLPSLLKMLI-------WSQNQLDEKVSYPRINDI 220
[Close]
BLAST of mRNA_H-elongata_contig55441.12958.1 vs. uniprot
Match: A0A1Y1HP05_KLENI (Uncharacterized protein n=1 Tax=Klebsormidium nitens TaxID=105231 RepID=A0A1Y1HP05_KLENI)

HSP 1 Score: 176 bits (447), Expect = 2.480e-52
Identity = 95/195 (48.72%), Postives = 127/195 (65.13%), Query Frame = 1 
Query:    1 QLVMNYLIVEGYRDAAERFLQESGTEPKVDLRTIEDRVAIRKAMMEGDVVKAMRLANEMDPMMLDGDRDLRFGLLKQRLLELVRRGETEEALNFAAECLAPESAGNPEMRRQVEEVITLLAFEDVTKCPLSEMLDIEQRQVAASRLNAAVLQSQQQEKGPWLPDLLRQLVHMQARCRWSGRSLAETVEFPRIEGI 585
            +LVMNYL+ EGY DAAE+F  ESG +P++DL TI DR+ +RKA+  G+V  A+   N+++P +LD +  L F L +QRL+EL+R G+ EEAL FA E LAP    N +   ++E  + LLAFED    P+S++LDI QRQ  AS LNAA+L SQ  EK P LP LL+ LV       W+   L E V +PRI  +
Sbjct:   33 KLVMNYLVTEGYVDAAEKFQLESGVKPEIDLSTITDRMTVRKAVQSGNVEDALEKVNDLNPEILDTNPQLFFHLQQQRLIELIRSGKVEEALEFAQEELAPRGEENHQFLEELERTVALLAFEDTANSPVSDLLDISQRQKTASELNAAILTSQSHEKDPRLPSLLKMLV-------WAQNQLDEKVSYPRINDL 220
[Close]
BLAST of mRNA_H-elongata_contig55441.12958.1 vs. uniprot
Match: A0A3Q7FDD0_SOLLC (Uncharacterized protein n=18 Tax=Pentapetalae TaxID=1437201 RepID=A0A3Q7FDD0_SOLLC)

HSP 1 Score: 177 bits (448), Expect = 2.580e-52
Identity = 93/199 (46.73%), Postives = 130/199 (65.33%), Query Frame = 1 
Query:    1 QLVMNYLIVEGYRDAAERFLQESGTEPKVDLRTIEDRVAIRKAMMEGDVVKAMRLANEMDPMMLDGDRDLRFGLLKQRLLELVRRGETEEALNFAAECLAPESAGNPEMRRQVEEVITLLAFEDVTKCPLSEMLDIEQRQVAASRLNAAVLQSQQQEKGPWLPDLLRQLVHMQARCRWSGRSLAETVEFPRIEGIDGTK 597
            +LVMN+L+ EGY +AAE+F +ESGT+P +DL TI DR+A++KA+  G+V  A+   N+++P +LD +  L F L +QRL+EL+R G+ EEAL FA E LAP    N     ++E+ + LLAFEDV+ CP+ E+LD+ QR   AS +NAA+L SQ  EK P LP LL+ L+       W+   L E   FPRI  +   K
Sbjct:   45 KLVMNFLVTEGYVEAAEKFRKESGTDPDIDLATITDRMAVKKAVQAGNVEDAIEKVNDLNPEILDTNPQLFFHLQQQRLIELIRNGKIEEALEFAQEELAPRGEENQSFLEELEKTVALLAFEDVSNCPVGELLDVSQRLKTASEVNAAILTSQSHEKDPKLPSLLKMLI-------WAQNQLGEKAVFPRITDLSTAK 236
[Close]
BLAST of mRNA_H-elongata_contig55441.12958.1 vs. uniprot
Match: A0A0B0NQE1_GOSAR (glucose-induced degradation protein 8 homolog isoform X1 n=36 Tax=Pentapetalae TaxID=1437201 RepID=A0A0B0NQE1_GOSAR)

HSP 1 Score: 176 bits (446), Expect = 5.320e-52
Identity = 93/195 (47.69%), Postives = 128/195 (65.64%), Query Frame = 1 
Query:    1 QLVMNYLIVEGYRDAAERFLQESGTEPKVDLRTIEDRVAIRKAMMEGDVVKAMRLANEMDPMMLDGDRDLRFGLLKQRLLELVRRGETEEALNFAAECLAPESAGNPEMRRQVEEVITLLAFEDVTKCPLSEMLDIEQRQVAASRLNAAVLQSQQQEKGPWLPDLLRQLVHMQARCRWSGRSLAETVEFPRIEGI 585
            +LVMN+L+ EGY +AAE+F  ESGTEP +DL TI DR+A++KA+  G+V  A+   N+++P +LD +  L F L +QRL+EL+R G+ EEAL FA E LAP    N     ++E  ++LLAFEDV+ CP+ E+LDI QR   AS +NAA+L SQ  EK P LP LL+ L+       W+   L E   +PRI  +
Sbjct:   46 KLVMNFLVTEGYVEAAEKFQMESGTEPDIDLATITDRMAVKKAVQSGNVEDAIEKVNDLNPEILDTNPQLFFHLQQQRLIELIRNGKIEEALEFAQEELAPRGEENQSFLEELERTVSLLAFEDVSNCPVGELLDISQRLKTASEVNAAILTSQSHEKDPKLPSLLKMLI-------WAQNQLDEKAAYPRINDL 233
[Close]
BLAST of mRNA_H-elongata_contig55441.12958.1 vs. uniprot
Match: A0A0D6QUP9_ARACU (Uncharacterized protein n=1 Tax=Araucaria cunninghamii TaxID=56994 RepID=A0A0D6QUP9_ARACU)

HSP 1 Score: 176 bits (446), Expect = 6.540e-52
Identity = 94/195 (48.21%), Postives = 127/195 (65.13%), Query Frame = 1 
Query:    1 QLVMNYLIVEGYRDAAERFLQESGTEPKVDLRTIEDRVAIRKAMMEGDVVKAMRLANEMDPMMLDGDRDLRFGLLKQRLLELVRRGETEEALNFAAECLAPESAGNPEMRRQVEEVITLLAFEDVTKCPLSEMLDIEQRQVAASRLNAAVLQSQQQEKGPWLPDLLRQLVHMQARCRWSGRSLAETVEFPRIEGI 585
            +LVMN+L+ EGY +AAERF  ESGTEP++DL TI DR+A+R+A+  G+V  A+   N+++P +LD +  L F L +QRL+EL+R G+ EEAL FA E LAP    N     ++E  + LLAFED + CPL+E+LDI QR   AS +NAA+L SQ  EK P LP LL+ L+       W+   L E   +P I  I
Sbjct:   53 KLVMNFLVTEGYVEAAERFRMESGTEPEIDLATITDRMAVRRAVQSGNVQDAIEKVNDLNPEILDTNPQLFFHLQQQRLIELIRSGKLEEALEFAQEELAPRGEENQAFLEELERTVALLAFEDTSNCPLAELLDISQRLKTASEVNAAILTSQSHEKDPKLPSLLKMLI-------WAQNQLDEKARYPHISDI 240
[Close]
BLAST of mRNA_H-elongata_contig55441.12958.1 vs. uniprot
Match: A0A1U8AR27_NELNU (glucose-induced degradation protein 8 homolog isoform X1 n=114 Tax=Mesangiospermae TaxID=1437183 RepID=A0A1U8AR27_NELNU)

HSP 1 Score: 176 bits (445), Expect = 7.320e-52
Identity = 95/195 (48.72%), Postives = 127/195 (65.13%), Query Frame = 1 
Query:    1 QLVMNYLIVEGYRDAAERFLQESGTEPKVDLRTIEDRVAIRKAMMEGDVVKAMRLANEMDPMMLDGDRDLRFGLLKQRLLELVRRGETEEALNFAAECLAPESAGNPEMRRQVEEVITLLAFEDVTKCPLSEMLDIEQRQVAASRLNAAVLQSQQQEKGPWLPDLLRQLVHMQARCRWSGRSLAETVEFPRIEGI 585
            +LVMN+L+ EGY +AAE+F  ESGTEP +DL TI DR+A++KA+  G+V  A+   N+++P +LD +  L F L +QRL+EL+R G+ EEAL FA E LAP    N     ++E  I LLAFEDVT CP+ E+LDI QR   AS +NAA+L SQ  EK P LP LL+ L+       W+   L E   +PRI  +
Sbjct:   45 RLVMNFLVTEGYVEAAEKFRMESGTEPDIDLATITDRMAVKKAVQCGNVEDAIEKVNDLNPEILDTNPQLFFHLQQQRLIELIRNGKVEEALEFAQEELAPRGEENQSFLEELERTIALLAFEDVTNCPVGELLDISQRLKTASEVNAAILTSQSHEKDPKLPSLLKLLI-------WAQNQLDEKAAYPRINDL 232
[Close]
BLAST of mRNA_H-elongata_contig55441.12958.1 vs. uniprot
Match: M1C1M8_SOLTU (Uncharacterized protein n=4 Tax=Solanum TaxID=4107 RepID=M1C1M8_SOLTU)

HSP 1 Score: 176 bits (445), Expect = 7.760e-52
Identity = 93/195 (47.69%), Postives = 128/195 (65.64%), Query Frame = 1 
Query:    1 QLVMNYLIVEGYRDAAERFLQESGTEPKVDLRTIEDRVAIRKAMMEGDVVKAMRLANEMDPMMLDGDRDLRFGLLKQRLLELVRRGETEEALNFAAECLAPESAGNPEMRRQVEEVITLLAFEDVTKCPLSEMLDIEQRQVAASRLNAAVLQSQQQEKGPWLPDLLRQLVHMQARCRWSGRSLAETVEFPRIEGI 585
            +LVMN+L+ EGY +AAE+F  ESGTEP++DL TI+DR+A+ KA+  G+V  A+ + N+++P +LD +  L F L +QRL+EL+R G+ EEAL FA E LAP    N      +E+ + LLAFEDV+KCP   +LD+ QR   AS +NAA+L SQ  EK P LP LL+ L+       W    L E V +PRI  +
Sbjct:   47 RLVMNFLVTEGYAEAAEKFKMESGTEPEIDLATIKDRMAVNKAVQSGNVEDAIEMVNDLNPEILDTNPQLFFHLQQQRLIELIRNGKVEEALEFAQEELAPMGEENQSFLEDLEKTVALLAFEDVSKCPAGALLDVSQRLKTASEVNAAILTSQNHEKDPKLPSLLKMLI-------WVQDQLDEKVYYPRITNL 234
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig55441.12958.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5K7B9_9PHAE5.170e-9071.86Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A1Y1Y6B0_9FUNG1.730e-5449.23Uncharacterized protein n=2 Tax=Basidiobolus meris... [more]
A0A6A6LUI4_HEVBR1.050e-5248.72Uncharacterized protein n=1 Tax=Hevea brasiliensis... [more]
D8QSL2_SELML1.800e-5249.23Uncharacterized protein n=1 Tax=Selaginella moelle... [more]
A0A1Y1HP05_KLENI2.480e-5248.72Uncharacterized protein n=1 Tax=Klebsormidium nite... [more]
A0A3Q7FDD0_SOLLC2.580e-5246.73Uncharacterized protein n=18 Tax=Pentapetalae TaxI... [more]
A0A0B0NQE1_GOSAR5.320e-5247.69glucose-induced degradation protein 8 homolog isof... [more]
A0A0D6QUP9_ARACU6.540e-5248.21Uncharacterized protein n=1 Tax=Araucaria cunningh... [more]
A0A1U8AR27_NELNU7.320e-5248.72glucose-induced degradation protein 8 homolog isof... [more]
M1C1M8_SOLTU7.760e-5247.69Uncharacterized protein n=4 Tax=Solanum TaxID=4107... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig55441contigH-elongata_contig55441:893..2967 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score270.4
Seed ortholog evalue6.6e-70
Seed eggNOG ortholog2880.D7G2A7
Preferred nameGID8
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0006109,GO:0006111,GO:0006508,GO:0006511,GO:0006807,GO:0007089,GO:0007346,GO:0008150,GO:0008152,GO:0009056,GO:0009057,GO:0009889,GO:0009890,GO:0009892,GO:0009987,GO:0010498,GO:0010564,GO:0010675,GO:0010677,GO:0010906,GO:0019222,GO:0019538,GO:0019941,GO:0030054,GO:0030163,GO:0031323,GO:0031324,GO:0031326,GO:0031327,GO:0031974,GO:0031981,GO:0032991,GO:0034657,GO:0043161,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043255,GO:0043632,GO:0044237,GO:0044238,GO:0044248,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044464,GO:0045721,GO:0045787,GO:0045912,GO:0045931,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0050789,GO:0050794,GO:0051603,GO:0051726,GO:0062012,GO:0062014,GO:0065007,GO:0070013,GO:0071704,GO:0080090,GO:0090068,GO:1900087,GO:1901564,GO:1901565,GO:1901575,GO:1901987,GO:1901989,GO:1901990,GO:1901992,GO:1902806,GO:1902808,GO:2000045
EggNOG free text desc.negative regulation of gluconeogenesis
EggNOG OGsKOG2659@1,KOG2659@2759
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionLisH dimerisation motif, subgroup
Ec32 orthologEc-16_001850.1
Exons5
Model size597
Cds size588
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig55441.12958.1prot_H-elongata_contig55441.12958.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig55441 902..2967 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930903.4488616-UTR-H-elongata_contig55441:892..9011622930903.4488616-UTR-H-elongata_contig55441:892..901Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig55441 893..901 +
1691679618.3377345-UTR-H-elongata_contig55441:892..9011691679618.3377345-UTR-H-elongata_contig55441:892..901Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig55441 893..901 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930903.465971-CDS-H-elongata_contig55441:901..10181622930903.465971-CDS-H-elongata_contig55441:901..1018Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig55441 902..1018 +
1691679618.3548977-CDS-H-elongata_contig55441:901..10181691679618.3548977-CDS-H-elongata_contig55441:901..1018Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig55441 902..1018 +
1622930903.484045-CDS-H-elongata_contig55441:1700..17771622930903.484045-CDS-H-elongata_contig55441:1700..1777Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig55441 1701..1777 +
1691679618.3638687-CDS-H-elongata_contig55441:1700..17771691679618.3638687-CDS-H-elongata_contig55441:1700..1777Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig55441 1701..1777 +
1622930903.499733-CDS-H-elongata_contig55441:1967..21331622930903.499733-CDS-H-elongata_contig55441:1967..2133Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig55441 1968..2133 +
1691679618.3723314-CDS-H-elongata_contig55441:1967..21331691679618.3723314-CDS-H-elongata_contig55441:1967..2133Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig55441 1968..2133 +
1622930903.516275-CDS-H-elongata_contig55441:2500..26741622930903.516275-CDS-H-elongata_contig55441:2500..2674Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig55441 2501..2674 +
1691679618.3818102-CDS-H-elongata_contig55441:2500..26741691679618.3818102-CDS-H-elongata_contig55441:2500..2674Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig55441 2501..2674 +
1622930903.5304112-CDS-H-elongata_contig55441:2913..29671622930903.5304112-CDS-H-elongata_contig55441:2913..2967Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig55441 2914..2967 +
1691679618.39371-CDS-H-elongata_contig55441:2913..29671691679618.39371-CDS-H-elongata_contig55441:2913..2967Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig55441 2914..2967 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig55441.12958.1

>prot_H-elongata_contig55441.12958.1 ID=prot_H-elongata_contig55441.12958.1|Name=mRNA_H-elongata_contig55441.12958.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=196bp
MNYLIVEGYRDAAERFLQESGTEPKVDLRTIEDRVAIRKAMMEGDVVKAM
RLANEMDPMMLDGDRDLRFGLLKQRLLELVRRGETEEALNFAAECLAPES
AGNPEMRRQVEEVITLLAFEDVTKCPLSEMLDIEQRQVAASRLNAAVLQS
QQQEKGPWLPDLLRQLVHMQARCRWSGRSLAETVEFPRIEGIDGTK
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mRNA from alignment at H-elongata_contig55441:893..2967+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig55441.12958.1 ID=mRNA_H-elongata_contig55441.12958.1|Name=mRNA_H-elongata_contig55441.12958.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=2075bp|location=Sequence derived from alignment at H-elongata_contig55441:893..2967+ (Himanthalia elongata Himel1 dioecious)
CAGCTGGTAATGAATTACCTGATCGTGGAGGGCTACCGGGACGCGGCGGA
GCGTTTCTTGCAGGAGTCGGGCACCGAGCCCAAGGTGGACCTTCGGACGA
TAGAGGATAGGGTGGCGATCAGGAAGGTGGGTGGCGAGTGTCGTTGGACG
ACACACATTGGACACAAAGTACAGGGCTGTGTCGTGGCGAGGAACACGTA
TGATGTGTACAGCTAACTTGTTAATAGCAATCATGTTATGCAGAGAAATC
GCGACGATCCCCTGCACCGCAGAGCGTCATCGATGTCTGCAACGTAAAGC
TGTGTACATTAGTATATACGTGCGTGTGGTAAGAGTACCTCCGGCATCAG
TGGCGGTCGGAAAGGGTGTTCTGGAAATGTGTAGCTGTCACAAATGCTGA
GCTCTAGAGAGGGTCATACAAGAGAGTTACGAGCTAGGAACGTGAGTCCA
GCCACCACTCCAATTGCCAACGAAAATACCTTCGGCGCTGATAGGACAAC
TTCCACGGCACGATATACCAATGTCTCCTGTCACATACCCTTCGTTCTTG
CACACTTAGTCACAGCTCGTACACCAAGGGCTACCATACCGGAAATGTGT
TCGACTGCTTATATTTTGCAAATCCCGTTGGGTAGATTTTTCGGAACAAT
AGTCGTACTCAAGGGAGGTGAAGTCGATTCCATGGTTTGTGTGGTGACCC
CTTTGCCGCTGCTGCTACTGTTTCTGCTGTGTGGTATTATTCTCACTACG
AACTCCCTCGCACGGCAATCTTGAAAACGCAAAACTTGCATTCGATGCTC
GCGGGAAGGCGATGATGGAAGGTGACGTGGTGAAGGCGATGAGGCTGGCA
AATGAGATGGATCCCATGATGCTCGACGGAGACAGGTGCGGGTGGTGTGG
GGAATGTGCCATGCACTGGCAAACGATGGTGAAGCGCGTGGTGCATACAC
TTTTTTTTTAATTTCGGAGCCCCGGCAGAATTCTAACCGGTGGCGCATTG
TCATCAAAACGCTTTCCACCGATACACACGTGGTCCGCGCGCCCAAGCTT
TCTGCTGCGGGTAATACTCTTCCAGGGATCTCCGCTTCGGGCTCTTGAAG
CAGCGGCTGCTGGAATTGGTACGCCGCGGGGAAACGGAGGAAGCTCTGAA
CTTTGCGGCCGAGTGCCTCGCACCGGAGAGCGCGGGGAATCCCGAAATGC
GGCGGCAAGTGGAAGAGGTCATCACGTTGCTGGCGTTCGAGGTGCGTATT
TCGTCAGGCGTTCGGGAGGCTCTTACCACACGCGCTTCCCCTTCGCCGAG
TTTTACCAGTGGACTTCTCTCCGTCGAATAGAAACGAGTGTTGTTTGTAC
TTCAGCAGAAGCAGCGTTGGCTCTACCGGTCGCGAGATATAACCCAGCGC
TTTGTTGGTGAAATTCAAGATACGAATGACGGCGTGGACGGTAACGGTCT
ACAGCATTTCTTGTGGTACAGTTGGACCACCAAGAAAACGTCGTGGTAAG
TCTTCGGTGTTGAGCGTCGCCGGAGGATCGAACACTGGCTTCTTGTTGTA
ACATGCCCCCTTCCCCCCCCAACACACACACTTTGCACGGCATGTTGCGC
CATTTCAGGACGTTACGAAATGCCCTCTGTCCGAGATGCTGGACATCGAA
CAGCGTCAGGTCGCAGCAAGCCGGCTTAACGCAGCGGTGCTACAGAGCCA
GCAACAAGAGAAAGGGCCGTGGTTGCCTGACCTCCTGCGACAGCTAGTGC
ACATGCAGGCGAGGTGCCGATGGTCTGGCCGCGTTCGAATCTCGCTCTTA
CCGCTCTCTTCTGGATTTCACGCTGTGAACATTTTGAATTGTTTTGGTTG
GTGCAGCCTTGTATTCGCCTTTTCTTGAACGTCCTCGAAAAGTGATACTT
ATTTTGGGACGTGTCACACAAGATGAGCTCAGGTGTCCGGCTCAAGATGT
TAGGTCTAATTTACTCTTTCTCATGCTTTTTTTTATGCACATCAAATACA
CCTCCCCGTCCCTCGCAGAAGTCCCTGGCCGAGACAGTGGAGTTCCCGCG
GATAGAAGGCATAGATGGGACCAAG
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Coding sequence (CDS) from alignment at H-elongata_contig55441:893..2967+

>mRNA_H-elongata_contig55441.12958.1 ID=mRNA_H-elongata_contig55441.12958.1|Name=mRNA_H-elongata_contig55441.12958.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1176bp|location=Sequence derived from alignment at H-elongata_contig55441:893..2967+ (Himanthalia elongata Himel1 dioecious)
ATGAATTACCTGATCGTGGAGGGCTACCGGGACGCGGCGGAGCGTTTCTT
GCAGGAGTCGGGCACCGAGCCCAAGGTGGACCTTCGGACGATAGAGGATA
GGGTGGCGATCAGGAAGATGAATTACCTGATCGTGGAGGGCTACCGGGAC
GCGGCGGAGCGTTTCTTGCAGGAGTCGGGCACCGAGCCCAAGGTGGACCT
TCGGACGATAGAGGATAGGGTGGCGATCAGGAAGGCGATGATGGAAGGTG
ACGTGGTGAAGGCGATGAGGCTGGCAAATGAGATGGATCCCATGATGCTC
GACGGAGACAGGCGATGATGGAAGGTGACGTGGTGAAGGCGATGAGGCTG
GCAAATGAGATGGATCCCATGATGCTCGACGGAGACAGGGATCTCCGCTT
CGGGCTCTTGAAGCAGCGGCTGCTGGAATTGGTACGCCGCGGGGAAACGG
AGGAAGCTCTGAACTTTGCGGCCGAGTGCCTCGCACCGGAGAGCGCGGGG
AATCCCGAAATGCGGCGGCAAGTGGAAGAGGTCATCACGTTGCTGGCGTT
CGAGGGATCTCCGCTTCGGGCTCTTGAAGCAGCGGCTGCTGGAATTGGTA
CGCCGCGGGGAAACGGAGGAAGCTCTGAACTTTGCGGCCGAGTGCCTCGC
ACCGGAGAGCGCGGGGAATCCCGAAATGCGGCGGCAAGTGGAAGAGGTCA
TCACGTTGCTGGCGTTCGAGGACGTTACGAAATGCCCTCTGTCCGAGATG
CTGGACATCGAACAGCGTCAGGTCGCAGCAAGCCGGCTTAACGCAGCGGT
GCTACAGAGCCAGCAACAAGAGAAAGGGCCGTGGTTGCCTGACCTCCTGC
GACAGCTAGTGCACATGCAGGCGAGGTGCCGATGGTCTGGCCGCGACGTT
ACGAAATGCCCTCTGTCCGAGATGCTGGACATCGAACAGCGTCAGGTCGC
AGCAAGCCGGCTTAACGCAGCGGTGCTACAGAGCCAGCAACAAGAGAAAG
GGCCGTGGTTGCCTGACCTCCTGCGACAGCTAGTGCACATGCAGGCGAGG
TGCCGATGGTCTGGCCGCTCCCTGGCCGAGACAGTGGAGTTCCCGCGGAT
AGAAGGCATAGATGGGACCAAGTCCCTGGCCGAGACAGTGGAGTTCCCGC
GGATAGAAGGCATAGATGGGACCAAG
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