mRNA_H-elongata_contig55320.12947.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig55320.12947.1
Unique NamemRNA_H-elongata_contig55320.12947.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig55320.12947.1 vs. uniprot
Match: D7G5N8_ECTSI (Ferredoxin n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G5N8_ECTSI)

HSP 1 Score: 183 bits (464), Expect = 1.260e-54
Identity = 97/162 (59.88%), Postives = 110/162 (67.90%), Query Frame = 1 
Query:    1 LYSTAAAQQRIDQWLRELGNIEPSTPTVDVTSVVVRQPAAAVSAPVAEEVEARPVEAPPAAGAPA-GSGYKVKIEWEGAIHEVTCDAEMTVLEAAMDAGLELPHSCMSGSCLTCPGKLVSGSVDQSEGVLEEDQTEAGYMLTCVSYPKSDVHFTVIEEDDLP 483
            L ST+AAQQRIDQWLRE G    S P                                        GSGYKVKIEWEGAIHEV CDAE T+LEAAMDAGLELP SCMSGSCLTCPGK+VSGSVDQSEGVLE++Q +AG++LTC+SYP+SDVHF V++E+DLP
Sbjct:  135 LVSTSAAQQRIDQWLRESGGEAASAPVAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGSGYKVKIEWEGAIHEVNCDAETTLLEAAMDAGLELPSSCMSGSCLTCPGKIVSGSVDQSEGVLEDEQKDAGFLLTCISYPESDVHFAVVDEEDLP 296
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BLAST of mRNA_H-elongata_contig55320.12947.1 vs. uniprot
Match: A0A835YL41_9STRA (Ferredoxin n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YL41_9STRA)

HSP 1 Score: 148 bits (374), Expect = 7.160e-42
Identity = 69/98 (70.41%), Postives = 79/98 (80.61%), Query Frame = 1 
Query:  187 APAGSGYKVKIEWEGAIHEVTCDAEMTVLEAAMDAGLELPHSCMSGSCLTCPGKLVSGSVDQSEGVLEEDQTEAGYMLTCVSYPKSDVHFTVIEEDDL 480
            AP G GY V I+W+GA H V CD E TVLEAAMDAGL+LPHSCMSGSCLTCPG+L +G V+Q +GVLE+DQ  AG MLTCVSYP SD+ F VI ED+L
Sbjct:  134 APPGDGYVVTIDWDGATHVVRCDGETTVLEAAMDAGLDLPHSCMSGSCLTCPGRLSAGRVEQGDGVLEDDQIAAGLMLTCVSYPLSDLRFEVIGEDEL 231
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BLAST of mRNA_H-elongata_contig55320.12947.1 vs. uniprot
Match: A0A2J6KNW1_LACSA (Ferredoxin n=3 Tax=Lactuca TaxID=4235 RepID=A0A2J6KNW1_LACSA)

HSP 1 Score: 116 bits (290), Expect = 3.410e-30
Identity = 52/92 (56.52%), Postives = 66/92 (71.74%), Query Frame = 1 
Query:  205 YKVKIEWEGAIHEVTCDAEMTVLEAAMDAGLELPHSCMSGSCLTCPGKLVSGSVDQSEGVLEEDQTEAGYMLTCVSYPKSDVHFTVIEEDDL 480
            YKV IE EG   E+  D + T+LE A+D+G+ +PH C  G C+TCP KL+SGSVDQSEG+L +D  E GY L CVSYPKSD H  +I E++L
Sbjct:   49 YKVAIEHEGETTELEVDPDETILEKALDSGMSVPHDCKLGVCMTCPAKLLSGSVDQSEGMLSDDVIERGYSLLCVSYPKSDCHIKIIPEEEL 140
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BLAST of mRNA_H-elongata_contig55320.12947.1 vs. uniprot
Match: A0A103Y2Z7_CYNCS (Ferredoxin n=1 Tax=Cynara cardunculus var. scolymus TaxID=59895 RepID=A0A103Y2Z7_CYNCS)

HSP 1 Score: 115 bits (289), Expect = 4.560e-30
Identity = 52/92 (56.52%), Postives = 66/92 (71.74%), Query Frame = 1 
Query:  205 YKVKIEWEGAIHEVTCDAEMTVLEAAMDAGLELPHSCMSGSCLTCPGKLVSGSVDQSEGVLEEDQTEAGYMLTCVSYPKSDVHFTVIEEDDL 480
            YKV IE EG   E+  D + T+LE A+D GL++PH C  G C+TCP KL+SGSV+QSEG+L +D  E GY L CVSYPKSD H  +I E++L
Sbjct:   47 YKVSIEHEGQTTELEVDPDETILEKALDTGLDVPHDCKLGVCMTCPAKLLSGSVNQSEGMLSDDVIERGYSLLCVSYPKSDCHIKIIPEEEL 138
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BLAST of mRNA_H-elongata_contig55320.12947.1 vs. uniprot
Match: UPI0010A2FF49 (ferredoxin C 1, chloroplastic n=1 Tax=Prosopis alba TaxID=207710 RepID=UPI0010A2FF49)

HSP 1 Score: 115 bits (288), Expect = 6.280e-30
Identity = 51/92 (55.43%), Postives = 65/92 (70.65%), Query Frame = 1 
Query:  205 YKVKIEWEGAIHEVTCDAEMTVLEAAMDAGLELPHSCMSGSCLTCPGKLVSGSVDQSEGVLEEDQTEAGYMLTCVSYPKSDVHFTVIEEDDL 480
            YKV IE +G + E+  D E T+L  A+D+GLE+PH C  G C+TCP +L+SGSVDQSEG+L +D  E GY L C SYP+SD H   I ED+L
Sbjct:   46 YKVVIEHQGELRELEIDPEETILSKALDSGLEVPHDCKLGVCMTCPARLLSGSVDQSEGMLSDDVVERGYALLCASYPRSDCHIRTIPEDEL 137
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BLAST of mRNA_H-elongata_contig55320.12947.1 vs. uniprot
Match: A0A1S2YX51_CICAR (ferredoxin C 1, chloroplastic n=1 Tax=Cicer arietinum TaxID=3827 RepID=A0A1S2YX51_CICAR)

HSP 1 Score: 113 bits (283), Expect = 3.780e-29
Identity = 50/94 (53.19%), Postives = 65/94 (69.15%), Query Frame = 1 
Query:  199 SGYKVKIEWEGAIHEVTCDAEMTVLEAAMDAGLELPHSCMSGSCLTCPGKLVSGSVDQSEGVLEEDQTEAGYMLTCVSYPKSDVHFTVIEEDDL 480
            S YKV IE EG   ++  + + T+L  A+D+GL +PH C  G C+TCP KL+SGSVDQS+G+L +D  E GY L C SYP+SD HF  I ED+L
Sbjct:   46 SSYKVVIEHEGQTTQLEVEPDETILSKALDSGLSVPHDCKLGVCMTCPAKLISGSVDQSDGMLSDDVVERGYALLCASYPRSDCHFRTIPEDEL 139
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BLAST of mRNA_H-elongata_contig55320.12947.1 vs. uniprot
Match: A0A5N6MZ86_9ASTR (Ferredoxin n=2 Tax=Mikania micrantha TaxID=192012 RepID=A0A5N6MZ86_9ASTR)

HSP 1 Score: 112 bits (281), Expect = 8.000e-29
Identity = 52/92 (56.52%), Postives = 65/92 (70.65%), Query Frame = 1 
Query:  205 YKVKIEWEGAIHEVTCDAEMTVLEAAMDAGLELPHSCMSGSCLTCPGKLVSGSVDQSEGVLEEDQTEAGYMLTCVSYPKSDVHFTVIEEDDL 480
            YKV IE +G   E+  D + T+LE A++AGL +PH C  G C+TCP KL+SGSVDQSEG+L ED  E GY L CVSYPKSD    +I E++L
Sbjct:   50 YKVAIEHDGQTTELEVDPDETILEKALEAGLAVPHDCKLGVCMTCPAKLLSGSVDQSEGMLSEDVIERGYSLLCVSYPKSDCQVKIIPEEEL 141
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BLAST of mRNA_H-elongata_contig55320.12947.1 vs. uniprot
Match: A0A7J7LHT5_9MAGN (Ferredoxin n=1 Tax=Kingdonia uniflora TaxID=39325 RepID=A0A7J7LHT5_9MAGN)

HSP 1 Score: 112 bits (280), Expect = 8.290e-29
Identity = 50/92 (54.35%), Postives = 65/92 (70.65%), Query Frame = 1 
Query:  205 YKVKIEWEGAIHEVTCDAEMTVLEAAMDAGLELPHSCMSGSCLTCPGKLVSGSVDQSEGVLEEDQTEAGYMLTCVSYPKSDVHFTVIEEDDL 480
            YKV IE EG+I E+  D + T+L  A+D GL +PH C  G C+TCP KL+SGSVDQSEG+L +D  + GY L CV+YP+SD H   I E++L
Sbjct:   39 YKVVIEHEGSIKELEVDEDETILNKALDIGLSVPHDCKLGVCMTCPAKLMSGSVDQSEGMLSDDVVDNGYALLCVAYPRSDCHIRTIPEEEL 130
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BLAST of mRNA_H-elongata_contig55320.12947.1 vs. uniprot
Match: A0A6J1IWL8_CUCMA (Ferredoxin n=4 Tax=Cucurbitaceae TaxID=3650 RepID=A0A6J1IWL8_CUCMA)

HSP 1 Score: 112 bits (279), Expect = 1.890e-28
Identity = 49/92 (53.26%), Postives = 66/92 (71.74%), Query Frame = 1 
Query:  205 YKVKIEWEGAIHEVTCDAEMTVLEAAMDAGLELPHSCMSGSCLTCPGKLVSGSVDQSEGVLEEDQTEAGYMLTCVSYPKSDVHFTVIEEDDL 480
            YKV IE EG   E+  DA+ ++L +A+D GL++PH C  G C+TCP +LVSG+VDQSEG+L +D  E GY L CV+YP+SD H   I E++L
Sbjct:   56 YKVVIEHEGQTTELEVDADESILNSALDKGLDIPHDCKLGVCMTCPARLVSGAVDQSEGMLSDDVVEKGYSLLCVAYPRSDCHIQTIPEEEL 147
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BLAST of mRNA_H-elongata_contig55320.12947.1 vs. uniprot
Match: A0A1Q3CXQ9_CEPFO (Fer2 domain-containing protein n=1 Tax=Cephalotus follicularis TaxID=3775 RepID=A0A1Q3CXQ9_CEPFO)

HSP 1 Score: 112 bits (279), Expect = 2.120e-28
Identity = 51/92 (55.43%), Postives = 63/92 (68.48%), Query Frame = 1 
Query:  205 YKVKIEWEGAIHEVTCDAEMTVLEAAMDAGLELPHSCMSGSCLTCPGKLVSGSVDQSEGVLEEDQTEAGYMLTCVSYPKSDVHFTVIEEDDL 480
            YKV IE EG   E+    + T+L  A+D+GL +PH C  G C+TCP KLVSG+VDQSEG+L +D  E GY L C SYP+SD HF  I E+DL
Sbjct:   60 YKVVIEHEGQATELDVGPDETILAKALDSGLSVPHDCKLGVCMTCPAKLVSGTVDQSEGMLSDDVVERGYALLCASYPRSDCHFRTIPEEDL 151
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig55320.12947.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G5N8_ECTSI1.260e-5459.88Ferredoxin n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G... [more]
A0A835YL41_9STRA7.160e-4270.41Ferredoxin n=1 Tax=Tribonema minus TaxID=303371 Re... [more]
A0A2J6KNW1_LACSA3.410e-3056.52Ferredoxin n=3 Tax=Lactuca TaxID=4235 RepID=A0A2J6... [more]
A0A103Y2Z7_CYNCS4.560e-3056.52Ferredoxin n=1 Tax=Cynara cardunculus var. scolymu... [more]
UPI0010A2FF496.280e-3055.43ferredoxin C 1, chloroplastic n=1 Tax=Prosopis alb... [more]
A0A1S2YX51_CICAR3.780e-2953.19ferredoxin C 1, chloroplastic n=1 Tax=Cicer arieti... [more]
A0A5N6MZ86_9ASTR8.000e-2956.52Ferredoxin n=2 Tax=Mikania micrantha TaxID=192012 ... [more]
A0A7J7LHT5_9MAGN8.290e-2954.35Ferredoxin n=1 Tax=Kingdonia uniflora TaxID=39325 ... [more]
A0A6J1IWL8_CUCMA1.890e-2853.26Ferredoxin n=4 Tax=Cucurbitaceae TaxID=3650 RepID=... [more]
A0A1Q3CXQ9_CEPFO2.120e-2855.43Fer2 domain-containing protein n=1 Tax=Cephalotus ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig55320contigH-elongata_contig55320:2167..3590 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeViridiplantae
Seed ortholog score112.5
Seed ortholog evalue1.9e-22
Seed eggNOG ortholog3827.XP_004511360.1
KEGG koko:K02639
KEGG Pathwayko00195,map00195
GOsGO:0003674,GO:0003824,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006091,GO:0008150,GO:0008152,GO:0009055,GO:0009314,GO:0009416,GO:0009507,GO:0009536,GO:0009628,GO:0009642,GO:0009644,GO:0009987,GO:0016491,GO:0022900,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044237,GO:0044424,GO:0044444,GO:0044464,GO:0048037,GO:0050896,GO:0051536,GO:0051537,GO:0051540,GO:0055114
EggNOG free text desc.Ferredoxins are iron-sulfur proteins that transfer electrons in a wide variety of metabolic reactions
EggNOG OGs2RZRG@2759,37VRI@33090,3GITD@35493,4JTZ2@91835,COG0633@1
COG Functional cat.C
Best tax levelfabids
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00194
Hectar predicted targeting categoryother localisation
Ec32 ortholog description2Fe-2S ferredoxin-type domain
Ec32 orthologEc-12_008550.1
Exons3
Model size486
Cds size486
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig55320.12947.1prot_H-elongata_contig55320.12947.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig55320 2167..3590 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930902.0928743-CDS-H-elongata_contig55320:2166..23761622930902.0928743-CDS-H-elongata_contig55320:2166..2376Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig55320 2167..2376 +
1691679617.8589537-CDS-H-elongata_contig55320:2166..23761691679617.8589537-CDS-H-elongata_contig55320:2166..2376Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig55320 2167..2376 +
1622930902.1098113-CDS-H-elongata_contig55320:2769..29671622930902.1098113-CDS-H-elongata_contig55320:2769..2967Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig55320 2770..2967 +
1691679617.8723993-CDS-H-elongata_contig55320:2769..29671691679617.8723993-CDS-H-elongata_contig55320:2769..2967Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig55320 2770..2967 +
1622930902.1220567-CDS-H-elongata_contig55320:3512..35901622930902.1220567-CDS-H-elongata_contig55320:3512..3590Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig55320 3513..3590 +
1691679617.8809943-CDS-H-elongata_contig55320:3512..35901691679617.8809943-CDS-H-elongata_contig55320:3512..3590Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig55320 3513..3590 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig55320.12947.1

>prot_H-elongata_contig55320.12947.1 ID=prot_H-elongata_contig55320.12947.1|Name=mRNA_H-elongata_contig55320.12947.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=162bp
LYSTAAAQQRIDQWLRELGNIEPSTPTVDVTSVVVRQPAAAVSAPVAEEV
EARPVEAPPAAGAPAGSGYKVKIEWEGAIHEVTCDAEMTVLEAAMDAGLE
LPHSCMSGSCLTCPGKLVSGSVDQSEGVLEEDQTEAGYMLTCVSYPKSDV
HFTVIEEDDLP*
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mRNA from alignment at H-elongata_contig55320:2167..3590+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig55320.12947.1 ID=mRNA_H-elongata_contig55320.12947.1|Name=mRNA_H-elongata_contig55320.12947.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1424bp|location=Sequence derived from alignment at H-elongata_contig55320:2167..3590+ (Himanthalia elongata Himel1 dioecious)
CTCTACAGCACGGCGGCAGCCCAGCAGCGGATTGACCAATGGCTCCGAGA
GTTGGGGAACATTGAACCCTCGACCCCGACAGTTGACGTTACGTCCGTTG
TGGTGAGGCAACCGGCAGCGGCTGTCAGCGCGCCAGTCGCGGAAGAAGTA
GAGGCTAGGCCAGTCGAAGCTCCGCCCGCAGCTGGTGCACCGGCAGGGTC
CGGGTACAAGGTACGGGGCTGGTGCGGTGTACAGATGTGTGATCGCCGGA
GAAGACATATGCTAGAGCACAATACTAAAGTAGCATACACAAATGAACTC
TGTGATCCGCTCCTTGCGCAAGACGGTAAAGCGTGATGCAATGCTTCAAA
TGCTTGTTATTTTCGGACTGCGATGGTGCCAAACGCCTCGCGTCGGGTAA
ATTTCTGTCTCGGTTCTACGCGATATCAATCGACGTGCTTAGTTCGGGAC
ACATTGTAATCCTTCAGACCCTGTAGGGATTCGTTCTTAATGCAAGCAAG
ACGACCGACCCTCATCGCTACCTTTACCTTGCGCTGAGGTCGGCGCGCTC
TCCTCTGAAGCCTCTGAAGGACACCCTATATGTCCTCGCGTTGCACATGG
AAGGTGAAAATCGAGTGGGAAGGAGCCATTCACGAGGTGACTTGCGATGC
CGAAATGACAGTGCTCGAGGCTGCCATGGATGCAGGGCTTGAGCTGCCGC
ACTCCTGCATGTCCGGTAGCTGCCTGACCTGTCCTGGCAAGCTCGTGAGC
GGCTCGGTCGACCAGAGCGAGGGGGTTCTAGAGGAAGACCAAACAGAAGC
GGTGGGTATCGTACGTACACAAGTTGGGCGACGGGAAGGTGGGAGGTGAC
GGTGGGGAGGGTGGACGAAATCATGATTATAACGTGTCACAGCAAAGCTC
TACCATGGGGCTGGTTTGGCGTAACCATATCCTCCGTCTTCGCTTTATTA
CGCAGTACGTGTGACAATACAAGGCACTGCTCATGCTGCTTCCCCCGCGA
TATTATCCGTTTTTTTTTGTCGTTGCATGGGCGACGGACCCAAAACATGA
TCCGTCGTTACCAGGACGAATGAGTGGGCTGCCAAACATCACAGAGTTGT
CGTGACACCCAGGAATTATATTAATAGGAAATCATCATAACCACGCCGCC
CTGACGTGTTAACTGTCAGAGTCACCAAGGGAGGAAGATGGTGCTCAGGG
TCTCAGTGTTGGCCGTTTCAAGAATACCTGGCTGCTGCAGTAGGATGATA
ACTAAACACAGCGAATCATCTATTTTTGCTCGGCAACTCTTAGACTCTTC
TCTCTCCTCGTTTTCTGTTTTAATTGTGCGTCCTAATGGATGACAGGGGT
ACATGCTGACGTGCGTGTCGTACCCGAAGAGCGATGTGCACTTCACCGTC
ATCGAAGAAGACGATCTGCCATGA
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Coding sequence (CDS) from alignment at H-elongata_contig55320:2167..3590+

>mRNA_H-elongata_contig55320.12947.1 ID=mRNA_H-elongata_contig55320.12947.1|Name=mRNA_H-elongata_contig55320.12947.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=972bp|location=Sequence derived from alignment at H-elongata_contig55320:2167..3590+ (Himanthalia elongata Himel1 dioecious)
CTCTACAGCACGGCGGCAGCCCAGCAGCGGATTGACCAATGGCTCCGAGA
GTTGGGGAACATTGAACCCTCGACCCCGACAGTTGACGTTACGTCCGTTG
TGGTGAGGCAACCGGCAGCGGCTGTCAGCGCGCCAGTCGCGGAAGAAGTA
GAGGCTAGGCCAGTCGAAGCTCCGCCCGCAGCTGGTGCACCGGCAGGGTC
CGGGTACAAGCTCTACAGCACGGCGGCAGCCCAGCAGCGGATTGACCAAT
GGCTCCGAGAGTTGGGGAACATTGAACCCTCGACCCCGACAGTTGACGTT
ACGTCCGTTGTGGTGAGGCAACCGGCAGCGGCTGTCAGCGCGCCAGTCGC
GGAAGAAGTAGAGGCTAGGCCAGTCGAAGCTCCGCCCGCAGCTGGTGCAC
CGGCAGGGTCCGGGTACAAGGTGAAAATCGAGTGGGAAGGAGCCATTCAC
GAGGTGACTTGCGATGCCGAAATGACAGTGCTCGAGGCTGCCATGGATGC
AGGGCTTGAGCTGCCGCACTCCTGCATGTCCGGTAGCTGCCTGACCTGTC
CTGGCAAGCTCGTGAGCGGCTCGGTCGACCAGAGCGAGGGGGTTCTAGAG
GAAGACCAAACAGAAGCGGTGAAAATCGAGTGGGAAGGAGCCATTCACGA
GGTGACTTGCGATGCCGAAATGACAGTGCTCGAGGCTGCCATGGATGCAG
GGCTTGAGCTGCCGCACTCCTGCATGTCCGGTAGCTGCCTGACCTGTCCT
GGCAAGCTCGTGAGCGGCTCGGTCGACCAGAGCGAGGGGGTTCTAGAGGA
AGACCAAACAGAAGCGGGGTACATGCTGACGTGCGTGTCGTACCCGAAGA
GCGATGTGCACTTCACCGTCATCGAAGAAGACGATCTGCCATGAGGGTAC
ATGCTGACGTGCGTGTCGTACCCGAAGAGCGATGTGCACTTCACCGTCAT
CGAAGAAGACGATCTGCCATGA
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