mRNA_H-elongata_contig55281.12943.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig55281.12943.1
Unique NamemRNA_H-elongata_contig55281.12943.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig55281.12943.1 vs. uniprot
Match: D8LNZ4_ECTSI (Pyridoxal phosphate homeostasis protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LNZ4_ECTSI)

HSP 1 Score: 219 bits (559), Expect = 4.120e-70
Identity = 104/124 (83.87%), Postives = 117/124 (94.35%), Query Frame = 1
Query:    1 ACESAGRERPLGVFIQIDTSGEEAKSGILHNDVDGCLSLSRHLKDSCPALELKGLMTIGAPGDMECFDRLCACRDAVAAGLGVEPQALELSMGMSGDFEEAIRRGSTNVRVGSTIFGARFYPNK 372
            AC S+ R+RPLGV++QIDTSGE++K+GI H+D+D CLSL+RHLKD+CPALELKGLMTIGAPGDMECFDRL ACRDAVA GLG+E QALELSMGMSGD+EEAIRRGSTNVRVGSTIFGARFYPNK
Sbjct:  128 ACVSSERKRPLGVYLQIDTSGEDSKAGIYHSDLDACLSLARHLKDNCPALELKGLMTIGAPGDMECFDRLNACRDAVAGGLGMEAQALELSMGMSGDYEEAIRRGSTNVRVGSTIFGARFYPNK 251          
BLAST of mRNA_H-elongata_contig55281.12943.1 vs. uniprot
Match: A0A835YW12_9STRA (Pyridoxal phosphate homeostasis protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YW12_9STRA)

HSP 1 Score: 164 bits (414), Expect = 2.790e-48
Identity = 82/124 (66.13%), Postives = 97/124 (78.23%), Query Frame = 1
Query:    1 ACESAGRERPLGVFIQIDTSGEEAKSGILHNDVDGCLSLSRHLKDSCPALELKGLMTIGAPGDMECFDRLCACRDAVAAGLGVEPQALELSMGMSGDFEEAIRRGSTNVRVGSTIFGARFYPNK 372
            AC +AGR   L V++Q+DTSGEE KSG+   D +G  +L++H+ + CP LELKGLMTIGAP D ECF+RL ACR  VA  LGV+  +LELSMGMSGDFEEAI RGST+VRVGSTIFGAR Y NK
Sbjct:  121 ACAAAGRASKLQVYLQVDTSGEETKSGV---DPEGAPTLAKHVVEDCPNLELKGLMTIGAPDDFECFNRLAACRHEVAEALGVDAASLELSMGMSGDFEEAIARGSTSVRVGSTIFGARNYANK 241          
BLAST of mRNA_H-elongata_contig55281.12943.1 vs. uniprot
Match: A0A7S2EMF2_TRICV (Hypothetical protein n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S2EMF2_TRICV)

HSP 1 Score: 140 bits (352), Expect = 2.900e-40
Identity = 71/120 (59.17%), Postives = 88/120 (73.33%), Query Frame = 1
Query:   10 SAGRERPLGVFIQIDTSGEEAKSGILHNDVDGCLSLSRHLKDSCPALELKGLMTIGAPGDMECFDRLCACRDAVAAGLGVEPQALELSMGMSGDFEEAIRRGSTNVRVGSTIFGARFYPN 369
            S G++  LG+++Q++TSGE+ KSG+  +  +  LSL   + +SCP L + GLMTIGAPGD  CFD L  CR   A  LGVE   LELSMGMSGDFEEAI+RG+T+VRVGSTIFGAR Y N
Sbjct:   11 SEGKKNKLGIYVQVNTSGEDTKSGV--SPGEELLSLLTAVTESCPHLSVDGLMTIGAPGDYGCFDALVQCRRDAAEALGVEESDLELSMGMSGDFEEAIKRGATSVRVGSTIFGARDYSN 128          
BLAST of mRNA_H-elongata_contig55281.12943.1 vs. uniprot
Match: A0A7S2V490_9STRA (Pyridoxal phosphate homeostasis protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V490_9STRA)

HSP 1 Score: 141 bits (355), Expect = 2.240e-39
Identity = 72/126 (57.14%), Postives = 89/126 (70.63%), Query Frame = 1
Query:    1 ACESAGRERPLGVFIQIDTSGEEAKSGILHNDVDGCLSLSRHLKDSCPALELKGLMTIGAPGDM--ECFDRLCACRDAVAAGLGVEPQALELSMGMSGDFEEAIRRGSTNVRVGSTIFGARFYPNK 372
            AC + GRE PLGV +Q++TSGE  KSG+   D   CL L+RH+ +SCP+L+ +GLMTIG  GD   +CF  L  CR  V+  LG+  + LE+SMGMSGD E A+  GSTNVRVGSTIFGAR Y NK
Sbjct:  119 ACMAIGREAPLGVMVQVNTSGETQKSGVAPED---CLDLARHISESCPSLKFQGLMTIGRLGDPSPDCFQCLLDCRKQVSEALGLGEEELEMSMGMSGDLELALEMGSTNVRVGSTIFGARTYANK 241          
BLAST of mRNA_H-elongata_contig55281.12943.1 vs. uniprot
Match: A0A7R9ZJB5_9STRA (Pyridoxal phosphate homeostasis protein n=1 Tax=Craspedostauros australis TaxID=1486917 RepID=A0A7R9ZJB5_9STRA)

HSP 1 Score: 142 bits (357), Expect = 5.220e-39
Identity = 70/113 (61.95%), Postives = 87/113 (76.99%), Query Frame = 1
Query:   31 LGVFIQIDTSGEEAKSGILHNDVDGCLSLSRHLKDSCPALELKGLMTIGAPGDMECFDRLCACRDAVAAGLGVEPQALELSMGMSGDFEEAIRRGSTNVRVGSTIFGARFYPN 369
            L +F+QI+TSGEE+KSG+  N+     +L + + D C  LELKG+MTIGAPGD++C + L ACRD VAA LG++   LE+SMGMSGDFE AI +GSTNVRVGSTIFGAR Y N
Sbjct:  190 LSIFVQINTSGEESKSGVQPNEA---AALCKQIVDECEHLELKGVMTIGAPGDVDCLESLVACRDDVAAELGIDKDTLEVSMGMSGDFEVAIAKGSTNVRVGSTIFGARDYSN 299          
BLAST of mRNA_H-elongata_contig55281.12943.1 vs. uniprot
Match: A0A7S0XFU7_9STRA (Hypothetical protein (Fragment) n=1 Tax=Chromulina nebulosa TaxID=96789 RepID=A0A7S0XFU7_9STRA)

HSP 1 Score: 140 bits (354), Expect = 5.350e-39
Identity = 70/124 (56.45%), Postives = 94/124 (75.81%), Query Frame = 1
Query:    1 ACESAGRERPLGVFIQIDTSGEEAKSGILHNDVDGCLSLSRHLKDSCPALELKGLMTIGAPGDMECFDRLCACRDAVAAGLGVEPQALELSMGMSGDFEEAIRRGSTNVRVGSTIFGARFYPNK 372
            ACE+  R+  L V+IQ+DTS E+ KSG+L  +V   + L + + + CP L++KG+MTIGAPGD+ CFD+L  CR+ +A  L + P  L++SMGMSGD+EEAI RG+T+VRVGSTIFGAR YPNK
Sbjct:  134 ACETVSRDC-LYVYIQVDTSLEDTKSGVLAEEV---IPLVQEIINECPNLKIKGVMTIGAPGDLSCFDKLIQCRNDLANYLSINPSELDVSMGMSGDYEEAIVRGATSVRVGSTIFGARIYPNK 253          
BLAST of mRNA_H-elongata_contig55281.12943.1 vs. uniprot
Match: A0A150G956_GONPE (Pyridoxal phosphate homeostasis protein n=1 Tax=Gonium pectorale TaxID=33097 RepID=A0A150G956_GONPE)

HSP 1 Score: 139 bits (350), Expect = 1.490e-38
Identity = 73/127 (57.48%), Postives = 89/127 (70.08%), Query Frame = 1
Query:    1 ACESAGRERPLGVFIQIDTSGEEAKSGILHNDVDGCLSLSRHLKDSCPALELKGLMTIGAP---GDMECFDRLCACRDAVAAGLGVEPQALELSMGMSGDFEEAIRRGSTNVRVGSTIFGARFYPNK 372
            A E AGR  PL V +Q++TSGEE+K G+   + DGC+ ++RH+  +CP L L GLMTIG P      E F  L  CR  VAA LG+  ++LELSMGMSGDFE+AI  GSTN+RVGSTIFGAR YP K
Sbjct:  115 AVEQAGRPEPLAVMVQVNTSGEESKYGV---EPDGCVDVARHIAKNCPRLRLAGLMTIGQPDYSSRPENFSCLADCRRRVAAELGLPDESLELSMGMSGDFEQAIEMGSTNIRVGSTIFGAREYPAK 238          
BLAST of mRNA_H-elongata_contig55281.12943.1 vs. uniprot
Match: A0A7S2NUX5_9STRA (Pyridoxal phosphate homeostasis protein n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2NUX5_9STRA)

HSP 1 Score: 140 bits (352), Expect = 2.660e-38
Identity = 70/121 (57.85%), Postives = 94/121 (77.69%), Query Frame = 1
Query:    7 ESAGRERPLGVFIQIDTSGEEAKSGILHNDVDGCLSLSRHLKDSCPALELKGLMTIGAPGDMECFDRLCACRDAVAAGLGVEPQALELSMGMSGDFEEAIRRGSTNVRVGSTIFGARFYPN 369
            E+AG +  LGV+IQ++TSGE++KSG+  + ++  +SL++ +   CP L+ +GLMTIGAPGD+ CFD+L   R  +A  LGV+  +LELSMGMSGDFEEAI+RG+TNVRVGSTIFG R Y N
Sbjct:  178 ENAG-DYKLGVYIQVNTSGEDSKSGV--SSIEDVISLAKDIHAQCPNLDFQGLMTIGAPGDVSCFDKLVQYRAELAQELGVDSSSLELSMGMSGDFEEAIKRGATNVRVGSTIFGQRDYSN 295          
BLAST of mRNA_H-elongata_contig55281.12943.1 vs. uniprot
Match: A0A7S4VXG3_9STRA (Hypothetical protein n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S4VXG3_9STRA)

HSP 1 Score: 137 bits (345), Expect = 2.850e-38
Identity = 69/117 (58.97%), Postives = 91/117 (77.78%), Query Frame = 1
Query:   22 ERPLGVFIQIDTSGEEAKSGILHNDVDGCLSLSRHLKDSCPALELKGLMTIGAPGDMECFDRLCACRDAVAAGLGVEPQ-ALELSMGMSGDFEEAIRRGSTNVRVGSTIFGARFYPN 369
            ++ LG+++Q++TSGEE+KSG+  ++V    +L+  +  +CP L++ GLMTIGAPGD  CFD L +CR  VA  LG+E + +LELSMGMSGDFEEAI RGST+VRVGSTIFGAR Y N
Sbjct:   91 KKRLGIYLQVNTSGEESKSGVTPDEVS---NLAVEISTNCPQLQILGLMTIGAPGDFTCFDSLVSCRTDVANALGLESEKSLELSMGMSGDFEEAIARGSTSVRVGSTIFGARDYSN 204          
BLAST of mRNA_H-elongata_contig55281.12943.1 vs. uniprot
Match: A0A7R9Y898_9VIRI (Pyridoxal phosphate homeostasis protein n=1 Tax=Prasinoderma coloniale TaxID=156133 RepID=A0A7R9Y898_9VIRI)

HSP 1 Score: 137 bits (345), Expect = 3.660e-38
Identity = 73/128 (57.03%), Postives = 92/128 (71.88%), Query Frame = 1
Query:    1 ACESAGRERPLGVFIQIDTSGEEAKSGILHNDVDGCLSLSRHL-KDSCPALELKGLMTIGAP---GDMECFDRLCACRDAVAAGLGVEPQALELSMGMSGDFEEAIRRGSTNVRVGSTIFGARFYPNK 372
            ACE+AGR   LGV +Q++TSGEE+K+G+     +  + L++H+  ++CP LEL GLMTIG P      E F+ L  CR  VAA L ++  AL+LSMGMSGDFE A+R GSTNVRVGSTIFGAR YPNK
Sbjct:   90 ACENAGRADKLGVMVQVNTSGEESKAGV--EPGEAAVELAKHIVSEACPNLELLGLMTIGMPDYTSKPENFECLARCRAEVAAALALDEDALDLSMGMSGDFEAAVRMGSTNVRVGSTIFGARSYPNK 215          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig55281.12943.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LNZ4_ECTSI4.120e-7083.87Pyridoxal phosphate homeostasis protein n=1 Tax=Ec... [more]
A0A835YW12_9STRA2.790e-4866.13Pyridoxal phosphate homeostasis protein n=1 Tax=Tr... [more]
A0A7S2EMF2_TRICV2.900e-4059.17Hypothetical protein n=1 Tax=Trieres chinensis Tax... [more]
A0A7S2V490_9STRA2.240e-3957.14Pyridoxal phosphate homeostasis protein n=1 Tax=Fi... [more]
A0A7R9ZJB5_9STRA5.220e-3961.95Pyridoxal phosphate homeostasis protein n=1 Tax=Cr... [more]
A0A7S0XFU7_9STRA5.350e-3956.45Hypothetical protein (Fragment) n=1 Tax=Chromulina... [more]
A0A150G956_GONPE1.490e-3857.48Pyridoxal phosphate homeostasis protein n=1 Tax=Go... [more]
A0A7S2NUX5_9STRA2.660e-3857.85Pyridoxal phosphate homeostasis protein n=1 Tax=Le... [more]
A0A7S4VXG3_9STRA2.850e-3858.97Hypothetical protein n=1 Tax=Ditylum brightwellii ... [more]
A0A7R9Y898_9VIRI3.660e-3857.03Pyridoxal phosphate homeostasis protein n=1 Tax=Pr... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig55281contigH-elongata_contig55281:2740..3135 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score219.5
Seed ortholog evalue9e-55
Seed eggNOG ortholog2880.D8LNZ4
Preferred namePROSC
KEGG rclassRC00553
KEGG koko:K01469,ko:K06997
KEGG ReactionR00251
KEGG Pathwayko00480,map00480
GOsGO:0003674,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006082,GO:0006520,GO:0006522,GO:0006807,GO:0008144,GO:0008150,GO:0008152,GO:0009078,GO:0009987,GO:0010467,GO:0019538,GO:0019752,GO:0019842,GO:0030170,GO:0036094,GO:0043167,GO:0043168,GO:0043170,GO:0043436,GO:0044237,GO:0044238,GO:0044281,GO:0044424,GO:0044464,GO:0048037,GO:0050662,GO:0051604,GO:0070279,GO:0071704,GO:0097159,GO:1901363,GO:1901564,GO:1901605
EggNOG free text desc.pyridoxal phosphate binding
EggNOG OGsCOG0325@1,KOG3157@2759
EC3.5.2.9
COG Functional cat.F
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionUncharacterised protein family UPF0001
Ec32 orthologEc-01_000520.1
Exons1
Model size396
Cds size396
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930901.5813134-CDS-H-elongata_contig55281:2739..31351622930901.5813134-CDS-H-elongata_contig55281:2739..3135Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig55281 2740..3135 +
1691679617.6568768-CDS-H-elongata_contig55281:2739..31351691679617.6568768-CDS-H-elongata_contig55281:2739..3135Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig55281 2740..3135 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig55281.12943.1prot_H-elongata_contig55281.12943.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig55281 2740..3135 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig55281.12943.1

>prot_H-elongata_contig55281.12943.1 ID=prot_H-elongata_contig55281.12943.1|Name=mRNA_H-elongata_contig55281.12943.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=132bp
ACESAGRERPLGVFIQIDTSGEEAKSGILHNDVDGCLSLSRHLKDSCPAL
ELKGLMTIGAPGDMECFDRLCACRDAVAAGLGVEPQALELSMGMSGDFEE
AIRRGSTNVRVGSTIFGARFYPNKVDGTTAA*
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mRNA from alignment at H-elongata_contig55281:2740..3135+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig55281.12943.1 ID=mRNA_H-elongata_contig55281.12943.1|Name=mRNA_H-elongata_contig55281.12943.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=396bp|location=Sequence derived from alignment at H-elongata_contig55281:2740..3135+ (Himanthalia elongata Himel1 dioecious)
GCGTGCGAGTCCGCGGGACGCGAGCGTCCACTGGGGGTCTTTATTCAAAT CGACACGAGCGGGGAGGAAGCTAAGTCAGGGATACTCCACAACGACGTAG ACGGGTGCTTGTCGCTGTCCCGTCACCTCAAGGATAGTTGCCCCGCCCTT GAATTGAAGGGGCTCATGACGATCGGAGCCCCAGGGGACATGGAATGCTT CGACAGGCTCTGCGCGTGTCGCGATGCCGTTGCGGCGGGCCTTGGCGTGG AGCCGCAGGCCCTGGAGCTCAGCATGGGCATGTCGGGAGACTTCGAAGAG GCTATTCGAAGGGGGAGCACGAACGTTCGCGTTGGAAGCACAATATTCGG CGCGAGATTCTATCCCAACAAGGTTGACGGTACCACTGCTGCTTAA
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Coding sequence (CDS) from alignment at H-elongata_contig55281:2740..3135+

>mRNA_H-elongata_contig55281.12943.1 ID=mRNA_H-elongata_contig55281.12943.1|Name=mRNA_H-elongata_contig55281.12943.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=792bp|location=Sequence derived from alignment at H-elongata_contig55281:2740..3135+ (Himanthalia elongata Himel1 dioecious)
GCGTGCGAGTCCGCGGGACGCGAGCGTCCACTGGGGGTCTTTATTCAAAT
CGACACGAGCGGGGAGGAAGCTAAGTCAGGGATACTCCACAACGACGTAG
ACGGGTGCTTGTCGCTGTCCCGTCACCTCAAGGATAGTTGCCCCGCCCTT
GAATTGAAGGGGCTCATGACGATCGGAGCCCCAGGGGACATGGAATGCTT
CGACAGGCTCTGCGCGTGTCGCGATGCCGTTGCGGCGGGCCTTGGCGTGG
AGCCGCAGGCCCTGGAGCTCAGCATGGGCATGTCGGGAGACTTCGAAGAG
GCTATTCGAAGGGGGAGCACGAACGTTCGCGTTGGAAGCACAATATTCGG
CGCGAGATTCTATCCCAACAAGGTTGACGGTACCACTGCTGCTTAAGCGT
GCGAGTCCGCGGGACGCGAGCGTCCACTGGGGGTCTTTATTCAAATCGAC
ACGAGCGGGGAGGAAGCTAAGTCAGGGATACTCCACAACGACGTAGACGG
GTGCTTGTCGCTGTCCCGTCACCTCAAGGATAGTTGCCCCGCCCTTGAAT
TGAAGGGGCTCATGACGATCGGAGCCCCAGGGGACATGGAATGCTTCGAC
AGGCTCTGCGCGTGTCGCGATGCCGTTGCGGCGGGCCTTGGCGTGGAGCC
GCAGGCCCTGGAGCTCAGCATGGGCATGTCGGGAGACTTCGAAGAGGCTA
TTCGAAGGGGGAGCACGAACGTTCGCGTTGGAAGCACAATATTCGGCGCG
AGATTCTATCCCAACAAGGTTGACGGTACCACTGCTGCTTAA
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