mRNA_H-elongata_contig55265.12938.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig55265.12938.1
Unique NamemRNA_H-elongata_contig55265.12938.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig55265.12938.1 vs. uniprot
Match: D8LAX2_ECTSI (Peptide-methionine (R)-S-oxide reductase n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LAX2_ECTSI)

HSP 1 Score: 144 bits (364), Expect = 1.340e-42
Identity = 64/84 (76.19%), Postives = 70/84 (83.33%), Query Frame = 1 
Query:    7 AELSSGCGWPAFDKCFKGSIVTKEDNAYGMRRVEIMCGACGGHLGHVFVGERMTPTNERHCVNSASVKFQPGAPSGGLEEDKVV 258
            ++  SGCGWPAFDKCFKG++VT  DNAYGM+RVEI+C  CGGHLGHVF GERMT TNERHCVNS SVKFQ G    GLEEDKVV
Sbjct:   71 SKFKSGCGWPAFDKCFKGAVVTNTDNAYGMQRVEIVCAKCGGHLGHVFEGERMTSTNERHCVNSVSVKFQKGPIPEGLEEDKVV 154
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BLAST of mRNA_H-elongata_contig55265.12938.1 vs. uniprot
Match: F2URT4_SALR5 (Peptide-methionine (R)-S-oxide reductase n=1 Tax=Salpingoeca rosetta (strain ATCC 50818 / BSB-021) TaxID=946362 RepID=F2URT4_SALR5)

HSP 1 Score: 137 bits (345), Expect = 1.040e-39
Identity = 57/84 (67.86%), Postives = 69/84 (82.14%), Query Frame = 1 
Query:    7 AELSSGCGWPAFDKCFKGSIVTKEDNAYGMRRVEIMCGACGGHLGHVFVGERMTPTNERHCVNSASVKFQPGAPSGGLEEDKVV 258
            A+ +SGCGWPAFDKC+KG++ T  DN++GMRRVEI+CGACGGHLGHVF GERMT TNERHCVNS S++F  G    G +E+KV 
Sbjct:   69 AKFNSGCGWPAFDKCYKGAVTTHVDNSFGMRRVEIVCGACGGHLGHVFEGERMTDTNERHCVNSVSIRFVKGVEPSGADEEKVT 152
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BLAST of mRNA_H-elongata_contig55265.12938.1 vs. uniprot
Match: A0A0G4FGB5_9ALVE (Peptide-methionine (R)-S-oxide reductase n=1 Tax=Chromera velia CCMP2878 TaxID=1169474 RepID=A0A0G4FGB5_9ALVE)

HSP 1 Score: 134 bits (338), Expect = 8.910e-39
Identity = 61/84 (72.62%), Postives = 66/84 (78.57%), Query Frame = 1 
Query:    7 AELSSGCGWPAFDKCFKGSIVTKEDNAYGMRRVEIMCGACGGHLGHVFVGERMTPTNERHCVNSASVKFQPGAPSGGLEEDKVV 258
            A+  SGCGWPAFDKCFKGS+VT+ D + GM R+EIMCG CGGHLGHVF GERMT TNERHCVNS SVKF       GLEE KVV
Sbjct:   61 AKFDSGCGWPAFDKCFKGSVVTERDASMGMVRIEIMCGKCGGHLGHVFEGERMTSTNERHCVNSVSVKFVDEPVPAGLEEAKVV 144
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BLAST of mRNA_H-elongata_contig55265.12938.1 vs. uniprot
Match: A9V0Z0_MONBE (Peptide-methionine (R)-S-oxide reductase n=1 Tax=Monosiga brevicollis TaxID=81824 RepID=A9V0Z0_MONBE)

HSP 1 Score: 129 bits (325), Expect = 8.960e-37
Identity = 56/84 (66.67%), Postives = 66/84 (78.57%), Query Frame = 1 
Query:    7 AELSSGCGWPAFDKCFKGSIVTKEDNAYGMRRVEIMCGACGGHLGHVFVGERMTPTNERHCVNSASVKFQPGAPSGGLEEDKVV 258
            A+ +SGCGWPAFDKC+ G++ T  DN++GMRRVEI+C AC GHLGHVF GER T TNERHCVNS SV++  G P  GL E KVV
Sbjct:   63 AKFASGCGWPAFDKCYAGAVKTHVDNSFGMRRVEIVCAACDGHLGHVFEGERFTETNERHCVNSVSVRYVEGEPDPGLTEAKVV 146
[Close]
BLAST of mRNA_H-elongata_contig55265.12938.1 vs. uniprot
Match: A0A830I253_9CHLO (Peptide-methionine (R)-S-oxide reductase n=1 Tax=Pycnococcus provasolii TaxID=41880 RepID=A0A830I253_9CHLO)

HSP 1 Score: 130 bits (328), Expect = 1.750e-36
Identity = 56/84 (66.67%), Postives = 64/84 (76.19%), Query Frame = 1 
Query:    7 AELSSGCGWPAFDKCFKGSIVTKEDNAYGMRRVEIMCGACGGHLGHVFVGERMTPTNERHCVNSASVKFQPGAPSGGLEEDKVV 258
            ++  SGCGWPAFDKC+KG ++T+ D+  GMRRVEIMCG CGGHLGHVF  E  TPT ERHCVNS SVK+  G P  GLEE K V
Sbjct:  123 SKFKSGCGWPAFDKCYKGGVITEVDSTMGMRRVEIMCGNCGGHLGHVFENEGFTPTMERHCVNSISVKYNAGEPPSGLEEAKAV 206
[Close]
BLAST of mRNA_H-elongata_contig55265.12938.1 vs. uniprot
Match: A0A835YX10_9STRA (Peptide-methionine (R)-S-oxide reductase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YX10_9STRA)

HSP 1 Score: 129 bits (323), Expect = 2.150e-36
Identity = 58/84 (69.05%), Postives = 68/84 (80.95%), Query Frame = 1 
Query:    7 AELSSGCGWPAFDKCFKGSIVTKEDNAYGMRRVEIMCGACGGHLGHVFVGERMTPTNERHCVNSASVKFQPGAPSGGLEEDKVV 258
            A+ +SGCGWPAFDKC+ GS+VT+ DN++G RRVEI+C  CGGHLGHVF GERMTPTNERHCVNSASV F  G     +EE KV+
Sbjct:   70 AKFNSGCGWPAFDKCYHGSVVTEVDNSWG-RRVEILCAKCGGHLGHVFEGERMTPTNERHCVNSASVTFIKGEAPKDVEESKVL 152
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BLAST of mRNA_H-elongata_contig55265.12938.1 vs. uniprot
Match: A0A0G4EFY5_VITBC (Peptide-methionine (R)-S-oxide reductase n=1 Tax=Vitrella brassicaformis (strain CCMP3155) TaxID=1169540 RepID=A0A0G4EFY5_VITBC)

HSP 1 Score: 129 bits (323), Expect = 2.570e-36
Identity = 56/84 (66.67%), Postives = 65/84 (77.38%), Query Frame = 1 
Query:    7 AELSSGCGWPAFDKCFKGSIVTKEDNAYGMRRVEIMCGACGGHLGHVFVGERMTPTNERHCVNSASVKFQPGAPSGGLEEDKVV 258
            A+  SGCGWPAFDKC+K S+ T+ D+++GM R+EIMC  CGGHLGHVF GER T TNERHCVNS SVK+  GAPS  LEE K  
Sbjct:   75 AKFDSGCGWPAFDKCYKESVYTETDSSFGMIRIEIMCANCGGHLGHVFTGERFTDTNERHCVNSVSVKYVKGAPSPPLEEAKCT 158
[Close]
BLAST of mRNA_H-elongata_contig55265.12938.1 vs. uniprot
Match: A0A6T7Y0U2_9CHLO (Peptide-methionine (R)-S-oxide reductase n=1 Tax=Pyramimonas obovata TaxID=1411642 RepID=A0A6T7Y0U2_9CHLO)

HSP 1 Score: 129 bits (325), Expect = 1.020e-35
Identity = 56/84 (66.67%), Postives = 65/84 (77.38%), Query Frame = 1 
Query:    7 AELSSGCGWPAFDKCFKGSIVTKEDNAYGMRRVEIMCGACGGHLGHVFVGERMTPTNERHCVNSASVKFQPGAPSGGLEEDKVV 258
            ++ +SGCGWPAFDKC+ GS+ T+ D+  GMRR+EIMC  C GHLGHVF GERMTPTNERHCVNS S KF  G P   L+EDKV 
Sbjct:  113 SKFNSGCGWPAFDKCYVGSVKTEIDSTMGMRRIEIMCAKCDGHLGHVFEGERMTPTNERHCVNSVSTKFVEGEPPVPLDEDKVA 196
[Close]
BLAST of mRNA_H-elongata_contig55265.12938.1 vs. uniprot
Match: C1EJ82_MICCC (Peptide-methionine (R)-S-oxide reductase n=1 Tax=Micromonas commoda (strain RCC299 / NOUM17 / CCMP2709) TaxID=296587 RepID=C1EJ82_MICCC)

HSP 1 Score: 124 bits (311), Expect = 1.130e-34
Identity = 52/84 (61.90%), Postives = 65/84 (77.38%), Query Frame = 1 
Query:    7 AELSSGCGWPAFDKCFKGSIVTKEDNAYGMRRVEIMCGACGGHLGHVFVGERMTPTNERHCVNSASVKFQPGAPSGGLEEDKVV 258
            ++ +SGCGWPAFDKC+KG+++T+ D  +GM+RVEIMCGAC GHLGHVF  E  TPT ERHCVNS SV ++ G P   LEE+K  
Sbjct:   61 SKFNSGCGWPAFDKCYKGALITETDMTFGMKRVEIMCGACDGHLGHVFENEGFTPTMERHCVNSVSVLYKEGPPPTPLEEEKCT 144
[Close]
BLAST of mRNA_H-elongata_contig55265.12938.1 vs. uniprot
Match: R7QFE0_CHOCR (Peptide-methionine (R)-S-oxide reductase n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QFE0_CHOCR)

HSP 1 Score: 125 bits (315), Expect = 1.260e-34
Identity = 59/84 (70.24%), Postives = 65/84 (77.38%), Query Frame = 1 
Query:    7 AELSSGCGWPAFDKCFKGSIVTKEDNAYGMRRVEIMCGACGGHLGHVFVGERMTPTNERHCVNSASVKFQPGAPSGGLEEDKVV 258
            A+  SGCGWPAFDKC+KGSI T+ D + GM+RVEIMCGAC GHLGHVF GE MTPTNERHCVNS S+KF  G      EE KVV
Sbjct:  116 AKFQSGCGWPAFDKCYKGSIRTETDASLGMKRVEIMCGACDGHLGHVFEGEGMTPTNERHCVNSVSIKFVDGKVE--KEEVKVV 197
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig55265.12938.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LAX2_ECTSI1.340e-4276.19Peptide-methionine (R)-S-oxide reductase n=2 Tax=E... [more]
F2URT4_SALR51.040e-3967.86Peptide-methionine (R)-S-oxide reductase n=1 Tax=S... [more]
A0A0G4FGB5_9ALVE8.910e-3972.62Peptide-methionine (R)-S-oxide reductase n=1 Tax=C... [more]
A9V0Z0_MONBE8.960e-3766.67Peptide-methionine (R)-S-oxide reductase n=1 Tax=M... [more]
A0A830I253_9CHLO1.750e-3666.67Peptide-methionine (R)-S-oxide reductase n=1 Tax=P... [more]
A0A835YX10_9STRA2.150e-3669.05Peptide-methionine (R)-S-oxide reductase n=1 Tax=T... [more]
A0A0G4EFY5_VITBC2.570e-3666.67Peptide-methionine (R)-S-oxide reductase n=1 Tax=V... [more]
A0A6T7Y0U2_9CHLO1.020e-3566.67Peptide-methionine (R)-S-oxide reductase n=1 Tax=P... [more]
C1EJ82_MICCC1.130e-3461.90Peptide-methionine (R)-S-oxide reductase n=1 Tax=M... [more]
R7QFE0_CHOCR1.260e-3470.24Peptide-methionine (R)-S-oxide reductase n=1 Tax=C... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig55265contigH-elongata_contig55265:234..851 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score144.4
Seed ortholog evalue2.4e-32
Seed eggNOG ortholog2880.D8LAX2
KEGG koko:K07305
EggNOG free text desc.peptide-methionine (R)-S-oxide reductase activity
EggNOG OGsCOG0229@1,KOG0856@2759
EC1.8.4.12
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionPeptide methionine sulphoxide reductase MrsB
Ec32 orthologEc-27_006120.1
Exons2
Model size261
Cds size261
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930901.1736364-CDS-H-elongata_contig55265:233..3471622930901.1736364-CDS-H-elongata_contig55265:233..347Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig55265 234..347 -
1691679617.544265-CDS-H-elongata_contig55265:233..3471691679617.544265-CDS-H-elongata_contig55265:233..347Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig55265 234..347 -
1622930901.1952486-CDS-H-elongata_contig55265:704..8511622930901.1952486-CDS-H-elongata_contig55265:704..851Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig55265 705..851 -
1691679617.5573378-CDS-H-elongata_contig55265:704..8511691679617.5573378-CDS-H-elongata_contig55265:704..851Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig55265 705..851 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig55265.12938.1prot_H-elongata_contig55265.12938.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig55265 234..851 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig55265.12938.1

>prot_H-elongata_contig55265.12938.1 ID=prot_H-elongata_contig55265.12938.1|Name=mRNA_H-elongata_contig55265.12938.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=87bp
SGAELSSGCGWPAFDKCFKGSIVTKEDNAYGMRRVEIMCGACGGHLGHVF
VGERMTPTNERHCVNSASVKFQPGAPSGGLEEDKVV*
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mRNA from alignment at H-elongata_contig55265:234..851-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig55265.12938.1 ID=mRNA_H-elongata_contig55265.12938.1|Name=mRNA_H-elongata_contig55265.12938.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=618bp|location=Sequence derived from alignment at H-elongata_contig55265:234..851- (Himanthalia elongata Himel1 dioecious)
TCTGGCGCCGAATTATCTAGTGGGTGCGGATGGCCTGCGTTTGACAAGTG
CTTCAAGGGCTCCATAGTAACCAAAGAGGACAATGCTTACGGAATGAGGA
GGGTGGAGATCATGTGTGGAGCTTGCGGGGGTCACCTTGGGCACGTGGTA
CGCCTCCTCGGGATCTTTTAGGAGCCATCGCAGCTGTATCCACATTTTCT
GCCCAATGCAGTGTTGTACAGAGCCGCTACCCGCGTTCGTTTTCCCGCGT
TCCTGAAAAACGTTGCACTTTTTTGCCTCGTAGCTTGAGAAGAATATGAA
AAATAAAAACAGGATTCGTGTGGTGTGGGCCATGTACGGCAAGAGGAAAT
GACCTTCACCGGAAGAAATGGCGCTGCCGTGCTAACATAGTGCCGTAGTG
ATGTGTAGCCGTAACCGCAGAGGGGAGCCGATCGAATGGTTGATGCCTTG
CTTTGCTTTCGCCTCCACCTCTGCCACCCCTTCCCGACGTGCACGCGCGC
GCAGTTCGTGGGCGAGCGCATGACGCCGACAAACGAGCGTCACTGCGTCA
ACTCCGCCAGCGTCAAATTCCAGCCGGGCGCTCCCTCCGGGGGCCTGGAA
GAGGACAAGGTTGTGTGA
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Coding sequence (CDS) from alignment at H-elongata_contig55265:234..851-

>mRNA_H-elongata_contig55265.12938.1 ID=mRNA_H-elongata_contig55265.12938.1|Name=mRNA_H-elongata_contig55265.12938.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=522bp|location=Sequence derived from alignment at H-elongata_contig55265:234..851- (Himanthalia elongata Himel1 dioecious)
TCTGGCGCCGAATTATCTAGTGGGTGCGGATGGCCTGCGTTTGACAAGTG
CTTCAAGGGCTCCATAGTAACCAAAGAGGACAATGCTTACGGAATGAGGA
GGGTGGAGATCATGTGTGGAGCTTGCGGGGGTCACCTTGGGCACGTGTCT
GGCGCCGAATTATCTAGTGGGTGCGGATGGCCTGCGTTTGACAAGTGCTT
CAAGGGCTCCATAGTAACCAAAGAGGACAATGCTTACGGAATGAGGAGGG
TGGAGATCATGTGTGGAGCTTGCGGGGGTCACCTTGGGCACGTGTTCGTG
GGCGAGCGCATGACGCCGACAAACGAGCGTCACTGCGTCAACTCCGCCAG
CGTCAAATTCCAGCCGGGCGCTCCCTCCGGGGGCCTGGAAGAGGACAAGG
TTGTGTGATTCGTGGGCGAGCGCATGACGCCGACAAACGAGCGTCACTGC
GTCAACTCCGCCAGCGTCAAATTCCAGCCGGGCGCTCCCTCCGGGGGCCT
GGAAGAGGACAAGGTTGTGTGA
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