mRNA_H-elongata_contig5525.12936.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	mRNA_H-elongata_contig5525.12936.1
Unique Name	mRNA_H-elongata_contig5525.12936.1
Type	mRNA
Organism	Himanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)

Homology

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BLAST of mRNA_H-elongata_contig5525.12936.1 vs. uniprot
Match: D7FVK7_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FVK7_ECTSI)

HSP 1 Score: 103 bits (258), Expect = 1.750e-22
Identity = 52/91 (57.14%), Postives = 67/91 (73.63%), Query Frame = 1

Query:  439 QADMDATLELCHPGNEPSAGRWKDNVDAVRSGVRSIQAMTTSLLSGTYVAPLARERLHQQASLSSLGRASSVRPVGGHGKSPTGQDLVLEL 711
            + D++A LELCH GNEPSAG W+D+V+ +R+GVRSI+ +  SLL+ TYVAP ARERLH++ SLSS G   S R  G  G+  T Q+ VLEL
Sbjct:   52 KTDINAALELCHSGNEPSAGEWQDDVETLRAGVRSIKTIAVSLLNNTYVAPRARERLHREPSLSSFG--GSTRAGGALGQPSTDQEFVLEL 140

The following BLAST results are available for this feature:

BLAST of mRNA_H-elongata_contig5525.12936.1 vs. uniprot

BLAST of mRNA_H-elongata_contig5525.12936.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1


Match Name	E-value	Identity	Description
D7FVK7_ECTSI	1.750e-22	57.14	Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2...	[more]

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
H-elongata_contig5525	contig	H-elongata_contig5525:417..3309 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 vs UniRef90	2022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious	2021-02-24

Properties


Property Name	Value
Hectar predicted targeting category	other localisation
Ec32 ortholog description	expressed unknown protein
Ec32 ortholog	Ec-15_003660.1
Exons	3
Model size	1958
Cds size	330
Stop	1
Start	1

Relationships

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
mRNA_H-elongata_contig5525.12936.1	prot_H-elongata_contig5525.12936.1	Himanthalia elongata Himel1 dioecious	polypeptide	H-elongata_contig5525 801..2065 +

The following UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1622930900.9192257-UTR-H-elongata_contig5525:416..800	1622930900.9192257-UTR-H-elongata_contig5525:416..800	Himanthalia elongata Himel1 dioecious	UTR	H-elongata_contig5525 417..800 +
1691679617.4663005-UTR-H-elongata_contig5525:416..800	1691679617.4663005-UTR-H-elongata_contig5525:416..800	Himanthalia elongata Himel1 dioecious	UTR	H-elongata_contig5525 417..800 +
1622930901.004857-UTR-H-elongata_contig5525:2065..3309	1622930901.004857-UTR-H-elongata_contig5525:2065..3309	Himanthalia elongata Himel1 dioecious	UTR	H-elongata_contig5525 2066..3309 +
1691679617.5068326-UTR-H-elongata_contig5525:2065..3309	1691679617.5068326-UTR-H-elongata_contig5525:2065..3309	Himanthalia elongata Himel1 dioecious	UTR	H-elongata_contig5525 2066..3309 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1622930900.9466798-CDS-H-elongata_contig5525:800..951	1622930900.9466798-CDS-H-elongata_contig5525:800..951	Himanthalia elongata Himel1 dioecious	CDS	H-elongata_contig5525 801..951 +
1691679617.4746864-CDS-H-elongata_contig5525:800..951	1691679617.4746864-CDS-H-elongata_contig5525:800..951	Himanthalia elongata Himel1 dioecious	CDS	H-elongata_contig5525 801..951 +
1622930900.968448-CDS-H-elongata_contig5525:1530..1598	1622930900.968448-CDS-H-elongata_contig5525:1530..1598	Himanthalia elongata Himel1 dioecious	CDS	H-elongata_contig5525 1531..1598 +
1691679617.4831386-CDS-H-elongata_contig5525:1530..1598	1691679617.4831386-CDS-H-elongata_contig5525:1530..1598	Himanthalia elongata Himel1 dioecious	CDS	H-elongata_contig5525 1531..1598 +
1622930900.9884262-CDS-H-elongata_contig5525:1954..2065	1622930900.9884262-CDS-H-elongata_contig5525:1954..2065	Himanthalia elongata Himel1 dioecious	CDS	H-elongata_contig5525 1955..2065 +
1691679617.4914467-CDS-H-elongata_contig5525:1954..2065	1691679617.4914467-CDS-H-elongata_contig5525:1954..2065	Himanthalia elongata Himel1 dioecious	CDS	H-elongata_contig5525 1955..2065 +

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at H-elongata_contig5525:417..3309+
coding sequence from alignment at H-elongata_contig5525:417..3309+

protein sequence of mRNA_H-elongata_contig5525.12936.1

>prot_H-elongata_contig5525.12936.1 ID=prot_H-elongata_contig5525.12936.1|Name=mRNA_H-elongata_contig5525.12936.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=110bp
MPGTARSPAPGYALSVLRQADMDATLELCHPGNEPSAGRWKDNVDAVRSG
VRSIQAMTTSLLSGTYVAPLARERLHQQASLSSLGRASSVRPVGGHGKSP
TGQDLVLEL*

mRNA from alignment at H-elongata_contig5525:417..3309+

Legend: UTRpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_H-elongata_contig5525.12936.1 ID=mRNA_H-elongata_contig5525.12936.1|Name=mRNA_H-elongata_contig5525.12936.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=2893bp|location=Sequence derived from alignment at H-elongata_contig5525:417..3309+ (Himanthalia elongata Himel1 dioecious)
CAACATCAACTGCAACTCTAACGATTACCCATCCCGCCTTTAGTCTTTTG
GAATCTATCTTTTTCTCTCATATATATATATAATACAATATATACATATT
TCCATCTCTCGGCGAAAAAATAGACTGTCCTGTTTTCAAGTCTGGTACGT
GTTCACGCCTCTGCGCCTTATCCACTTCCCCCCCCCACGAGCGCATGAAA
AGAACCTCATACCCCCGCCTCCGCTCGTCGCATGAAACGGACGCTCGAAA
CCGAATGTTTTGTGCAACAAACTCTCGCCCTCTGCGACGACCTTGATCGT
CTCTCAATATTTAGAGTACAGTAGAGTGGTAGATTATGTTAACCTTTAGC
CTGGATTTTCCATCGGCGGATTGGCAATGGGGTTATGCCGGGCACTGCCC
GTTCACCCGCCCCGGGGTACGCGTTGTCCGTTTTGCGTCAGGCCGATATG
GATGCCACCCTGGAGCTCTGTCATCCCGGGAACGAACCCTCGGCGGGACG
TTGGAAGGACAACGTTGACGCTGTCCGTTCGGGCGGTAAGCACCCAAGAG
TCGATCGCAGCCTTCAGCAGCCGCAGCGTCACCTGACGCTTTTCGAAAGC
ACCACACGGTCATGCGTAGAACTCGACGGTCGTAACGCAGGAGGCATGAG
TGCTGCCCACCTACCTACACACAGCAGTTGCAAGAATTATTTTTCCTGAT
ACTGTTGGCACAAAAGCAGCGAGCCCGGGTGAAATCGTTCACACCTAGGG
AGCGATTACCGACCCGTTGAACGCCTATGTACCGAAAACGTTCTCGTACA
ACGATTGTACCATCTAATCTTTTCCGATCCTTGACGCATTGCTCTTGCTC
TTGCGCTTGGTGATCACCGAACGTTACACCATAAAAATATTGAGGCAGGG
AACCTCTGCAGCGGCAGCAGGAGCTCTTACCTTAAAGCTACAAGCCGAGC
CCGATGCTTAGATCGATGGTTCAAAATTACATCCGCGTTGTCGATTCGGT
CGTTGGAGGCCCTGTCGAAGCCCTTATCGACGGCTAGCGAGGCAATTCAC
GGAGTACCCGCCGTTTGCGATATGCTCTACGTGTGTCTCTGCGTGTCCTT
GTTGCGTCCGACAGTGCGATCGATTCAGGCGATGACGACGAGCCTACTGA
GCGGCACGTACGTGGCACCCTTGGCACGAGAGGTGAGGCTAACGAGCCCA
GACTGCTTTCAGCACAGAATCAATCCAAGCTTGTTCGACCCATACCTCCT
ATGTCGGAAGTACTGTGCCATGTTACGCGTTTGTGGATATCCATGGGACA
ATGAGATCACCCGACAGTTGAAGTCGGCTTCCGGTCCGGCCAGAGGTTTG
CCGATAATGAGATCCCCGCTCCACCCGCGCGCGCGCCGTCAAATCAGACT
CCTTTGTTGCCCGTCCCTTTTTGACCCTGTCCGCCTCACACCAGCCCCCT
CTTTCCCTACGGTCACTCCCTCCCACCGACTCTTTTGTCGTTCTGCTCGT
CTGCTCTTCGCCACGCCTTCACCGGTTCCGAACGAAAGCGCCTCCATCAA
CAAGCTTCCCTGTCCTCCCTTGGACGCGCTTCAAGCGTGCGCCCTGTCGG
GGGGCACGGGAAATCACCAACGGGCCAGGACCTTGTTTTGGAACTTTGAG
CGATTCCGATTGCCGTGGAAGCAATGCCCCGGTCGCGACAGCGCCACCTC
TCTCTCTCTCAGTGTGCGGGAAGCACAGGAGACTCCCTCGCGTATCTACT
TGATGCGTGCATGATCGTGGAGTTCTTCTTTATAGGTGCGGGGGACATAT
TGGCGTTGTGACCCTCTCGAAGACCCAGTCCCCTTAGAATTTTCCTCATG
GCGCTGTCATCGCGCACTAAGCGTGAGTACTGCGGACCGAAGAGAGCGGC
GGAGTCTTCTCGGTGCTTGCGGCAAACAAAATGTAATTAGAGAGGGTCGT
GACCCATACTTTTCGAGCACCATTGCTTGTTTAATTGGGCTCGGGATAGA
AAATACAAAGTACAAGTAGGCTCTAGTTCTCGCCTCTACGGCGTTGGGCA
GTTGATTCTCGTGTGTCGGACGACCAAGTTGGAGGAGATTTTTTCAAACG
TTGGCGTTCGAAGGGTTTCTTAACAGTGTGCGGAGGCGTTTGTTGTCCCC
GTAAAGCTTTTGTAGCAAGAGCTACGCTCTGGCACGATAAAATTCAATCC
CATATAACCTTTTCTGATAGTGTTCCTTCGTTGAAGATTTTTTTTTGTCG
TCTGAGGAGGGCACGTTTCAAGGATGTATACTCCTATGAATACTAAGCAC
GCCAACTGAAGTGCGATCGTTCTTAGTTTCAAAACGCCCTCCGGGATATA
CTCCTTGGAGGCAGAAGGGTCTGTGCGCGAACGCCCACTGTCATAGTAAC
ATATTGAGCGCAGCAAGACATCAATATGTACTCACGACTTTGTTCGAGCA
ACGTTGCTCCCAGAAAGCCTGTATCGCCATAGCCAGGAAGGGAGAGGGCG
GCCTAGTTATATTCCGCAGGAAGTGGCTAGCGCACGCGTTATGACATCTA
TATATCTTTCTATCTATATATTACGAGTATTTCTCCCTTGTGTCGTATGA
CCTAGAGCGGTTTGTGTGGCGTTATTTCCAAACCTCGTGTGACTCGTAGC
GGATAAGACATCACTACTATTCCCTGTGGGAAATGTTACCGTTACCCCCT
TTTACCAGCCGTCGGTGCATCTCTCACCCCAGCCCCTCACCCCTTGCCAT
CTTCGGTGCTTCCTCAGCGAGGTAGTGCTCGACGGGGGTCTGCTCGCCGG
AATAGTTCAGATCATTGCTGATGTTGCTGTTGCTGTTGTTGCTCCATGAA
CAGCATGCCGCCAGAACATGTTCATAATATTGCTTATTTACCC

Coding sequence (CDS) from alignment at H-elongata_contig5525:417..3309+

>mRNA_H-elongata_contig5525.12936.1 ID=mRNA_H-elongata_contig5525.12936.1|Name=mRNA_H-elongata_contig5525.12936.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=660bp|location=Sequence derived from alignment at H-elongata_contig5525:417..3309+ (Himanthalia elongata Himel1 dioecious)
ATGCCGGGCACTGCCCGTTCACCCGCCCCGGGGTACGCGTTGTCCGTTTT
GCGTCAGGCCGATATGGATGCCACCCTGGAGCTCTGTCATCCCGGGAACG
AACCCTCGGCGGGACGTTGGAAGGACAACGTTGACGCTGTCCGTTCGGGC
GATGCCGGGCACTGCCCGTTCACCCGCCCCGGGGTACGCGTTGTCCGTTT
TGCGTCAGGCCGATATGGATGCCACCCTGGAGCTCTGTCATCCCGGGAAC
GAACCCTCGGCGGGACGTTGGAAGGACAACGTTGACGCTGTCCGTTCGGG
CGTGCGATCGATTCAGGCGATGACGACGAGCCTACTGAGCGGCACGTACG
TGGCACCCTTGGCACGAGAGTGCGATCGATTCAGGCGATGACGACGAGCC
TACTGAGCGGCACGTACGTGGCACCCTTGGCACGAGAGCGCCTCCATCAA
CAAGCTTCCCTGTCCTCCCTTGGACGCGCTTCAAGCGTGCGCCCTGTCGG
GGGGCACGGGAAATCACCAACGGGCCAGGACCTTGTTTTGGAACTTTGAC
GCCTCCATCAACAAGCTTCCCTGTCCTCCCTTGGACGCGCTTCAAGCGTG
CGCCCTGTCGGGGGGCACGGGAAATCACCAACGGGCCAGGACCTTGTTTT
GGAACTTTGA