mRNA_H-elongata_contig55249.12935.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig55249.12935.1
Unique NamemRNA_H-elongata_contig55249.12935.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
[Close]
BLAST of mRNA_H-elongata_contig55249.12935.1 vs. uniprot
Match: D8LM31_ECTSI (RING-type domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LM31_ECTSI)

HSP 1 Score: 102 bits (255), Expect = 9.640e-21
Identity = 70/182 (38.46%), Postives = 90/182 (49.45%), Query Frame = 2 
Query:  215 TGDVGNTKA--SPSLQRSAGDDALAPSSPLLPLLDLRLAEEDEEENITSSLRRD-GCYTGKYLRAKSI-----NTRRRSLAPVFRSHCKVESGTYRERRDGQCSVAKKGPRMD--GDVDGGEAKSRAICRLCFKMEHDTILRPCGHMLCSVCARKLRLAADISGEELFCPWDRQPVDELNPL 730
            T DVG T+A  +P+      D    P SPLLPLL LRL+EE+++E    SL    G   G               RRRSLA  F SH   +     E    + +    G   +  GD  GG   +   CRLC +   DT+++PC H  C VC  KLR  A+ SG+ L CPWDR+ VDE+ PL
Sbjct:  835 TDDVGRTRAVAAPAAATVDTDGQPTPDSPLLPLLQLRLSEEEDDERFEYSLAWGAGAEAGXXXXXXXXXQAGGKARRRSLAKAFSSHKTRKEPKAHEGVGARPAAQAAGNESEARGDGVGGGKTTTLTCRLCCRNACDTVMKPCQHSACGVCVDKLRGQAEQSGQALSCPWDRRGVDEIRPL 1016
[Close]
BLAST of mRNA_H-elongata_contig55249.12935.1 vs. uniprot
Match: A0A6H5KMM5_9PHAE (RING-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KMM5_9PHAE)

HSP 1 Score: 102 bits (253), Expect = 1.880e-20
Identity = 91/279 (32.62%), Postives = 121/279 (43.37%), Query Frame = 2 
Query:    2 AALAEYRVGVALLESKHRNV--------------STSLKLEKKGGALDVP---ATVDAVMGNERDTA-----DTAVSGPPQYGKDKLQAWETS--TGDVGNTKA--SPSLQRSAGDDALAPSSPLLPLLDLRLAEEDEEENITSSLRRDGC--------YTGKYLRAKSINTRRRSLAPVFRSHCKVESGTYRERRDGQCSVAKKGPRMD--GDVDGGEAKSRAICRLCFKMEHDTILRPCGHMLCSVCARKLRLAADISGEELFCPWDRQPVDELNPL 730
            AAL EY  GVAL+ S+  +               ST+L      GA   P   A V     +   +      +   SG P     K    +T+  TGDV  T+A  +P+      D    P SPLLPLL LRL+EE+++E    SL   G               +A+    RRRSLA  F SH   +     E    + +    G   +  GD  GG   +R  C        DT+++PC H  CSVC  KLR   + SG+ L CPWDR+ VDE+ PL
Sbjct: 1080 AALREYHDGVALVRSRRNHHAFATAGAASETEENSTALSCVPDAGAAATPPPAAQVGETAASRTSSGLGLEEEAYASGLPA----KAAPVDTTPLTGDVDRTRAVAAPAAATVEHDGQPTPDSPLLPLLQLRLSEEEDDERFEYSLAWGGAGAXXXXXXXXXXXXKARGGKPRRRSLAKAFSSHKTRKEPKVHEGAGARSAAQVAGIESEARGDGVGGGKTTRLTCXXXXXNACDTVMKPCQHSACSVCVDKLRSQGEQSGQALSCPWDRRGVDEICPL 1354
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig55249.12935.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LM31_ECTSI9.640e-2138.46RING-type domain-containing protein n=1 Tax=Ectoca... [more]
A0A6H5KMM5_9PHAE1.880e-2032.62RING-type domain-containing protein n=1 Tax=Ectoca... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig55249contigH-elongata_contig55249:2975..3860 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Ec32 ortholog descriptionZinc finger, RING/FYVE/PHD-type
Ec32 orthologEc-14_002690.1
Hectar predicted targeting categoryother localisation
Exons1
Model size886
Cds size606
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig55249.12935.1prot_H-elongata_contig55249.12935.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig55249 3102..3707 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930900.8287857-UTR-H-elongata_contig55249:2974..31011622930900.8287857-UTR-H-elongata_contig55249:2974..3101Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig55249 2975..3101 +
1691679617.4248939-UTR-H-elongata_contig55249:2974..31011691679617.4248939-UTR-H-elongata_contig55249:2974..3101Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig55249 2975..3101 +
1622930900.866738-UTR-H-elongata_contig55249:3707..38601622930900.866738-UTR-H-elongata_contig55249:3707..3860Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig55249 3708..3860 +
1691679617.4559577-UTR-H-elongata_contig55249:3707..38601691679617.4559577-UTR-H-elongata_contig55249:3707..3860Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig55249 3708..3860 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930900.8456087-CDS-H-elongata_contig55249:3101..37071622930900.8456087-CDS-H-elongata_contig55249:3101..3707Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig55249 3102..3707 +
1691679617.445213-CDS-H-elongata_contig55249:3101..37071691679617.445213-CDS-H-elongata_contig55249:3101..3707Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig55249 3102..3707 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig55249.12935.1

>prot_H-elongata_contig55249.12935.1 ID=prot_H-elongata_contig55249.12935.1|Name=mRNA_H-elongata_contig55249.12935.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=202bp
MGNERDTADTAVSGPPQYGKDKLQAWETSTGDVGNTKASPSLQRSAGDDA
LAPSSPLLPLLDLRLAEEDEEENITSSLRRDGCYTGKYLRAKSINTRRRS
LAPVFRSHCKVESGTYRERRDGQCSVAKKGPRMDGDVDGGEAKSRAICRL
CFKMEHDTILRPCGHMLCSVCARKLRLAADISGEELFCPWDRQPVDELNP
L*
back to top

mRNA from alignment at H-elongata_contig55249:2975..3860+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig55249.12935.1 ID=mRNA_H-elongata_contig55249.12935.1|Name=mRNA_H-elongata_contig55249.12935.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=886bp|location=Sequence derived from alignment at H-elongata_contig55249:2975..3860+ (Himanthalia elongata Himel1 dioecious)
CGCCGCCCTCGCAGAATACCGGGTCGGGGTCGCTCTGCTTGAATCGAAAC
ACCGCAATGTGTCGACCTCTCTAAAATTGGAGAAGAAGGGAGGAGCTTTG
GATGTACCAGCGACCGTTGATGCAGTAATGGGTAACGAGCGAGATACAGC
CGACACTGCGGTATCAGGACCTCCGCAGTATGGAAAGGACAAATTGCAGG
CGTGGGAGACGTCTACGGGAGACGTCGGTAACACAAAGGCGTCGCCTTCG
CTTCAGAGAAGTGCGGGAGACGATGCGCTCGCCCCCTCGTCGCCACTTTT
ACCTCTATTGGATCTGCGGCTTGCAGAGGAGGATGAGGAGGAAAATATAA
CTTCTTCACTCCGCCGCGACGGTTGTTACACCGGAAAATACCTACGGGCA
AAGAGTATCAACACGCGACGAAGGAGCCTTGCGCCCGTGTTCCGCTCTCA
TTGTAAGGTGGAAAGCGGGACCTATCGCGAGCGACGGGATGGGCAGTGTT
CTGTGGCGAAAAAAGGCCCAAGGATGGACGGCGATGTCGATGGAGGTGAA
GCCAAAAGTCGTGCTATATGTAGGCTTTGTTTCAAGATGGAACACGACAC
GATCCTTCGCCCTTGTGGGCACATGTTGTGCAGCGTGTGCGCGAGGAAGC
TGAGGCTTGCGGCAGATATATCGGGAGAAGAACTATTCTGTCCTTGGGAT
CGACAGCCTGTAGATGAATTAAATCCTCTGTAAAGCTTATACTACGCCGT
ATTGGAAACGTCTCGGGGGTCGCGTGAGACTCGGAATCGTCCGAGAGTCT
TTTAAAGTTTCCTCTAGGGCTACTGTCGGTCGATCAAACGCATCCCTCAG
TGGATAATTTCGATGAAGGAGCGTCGTCTTTCCTCA
back to top

Coding sequence (CDS) from alignment at H-elongata_contig55249:2975..3860+

>mRNA_H-elongata_contig55249.12935.1 ID=mRNA_H-elongata_contig55249.12935.1|Name=mRNA_H-elongata_contig55249.12935.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1212bp|location=Sequence derived from alignment at H-elongata_contig55249:2975..3860+ (Himanthalia elongata Himel1 dioecious)
ATGGGTAACGAGCGAGATACAGCCGACACTGCGGTATCAGGACCTCCGCA
GTATGGAAAGGACAAATTGCAGGCGTGGGAGACGTCTACGGGAGACGTCG
GTAACACAAAGGCGTCGCCTTCGCTTCAGAGAAGTGCGGGAGACGATGCG
CTCGCCCCCTCGTCGCCACTTTTACCTCTATTGGATCTGCGGCTTGCAGA
GGAGGATGAGGAGGAAAATATAACTTCTTCACTCCGCCGCGACGGTTGTT
ACACCGGAAAATACCTACGGGCAAAGAGTATCAACACGCGACGAAGGAGC
CTTGCGCCCGTGTTCCGCTCTCATTGTAAGGTGGAAAGCGGGACCTATCG
CGAGCGACGGGATGGGCAGTGTTCTGTGGCGAAAAAAGGCCCAAGGATGG
ACGGCGATGTCGATGGAGGTGAAGCCAAAAGTCGTGCTATATGTAGGCTT
TGTTTCAAGATGGAACACGACACGATCCTTCGCCCTTGTGGGCACATGTT
GTGCAGCGTGTGCGCGAGGAAGCTGAGGCTTGCGGCAGATATATCGGGAG
AAGAACTATTCTGTCCTTGGGATCGACAGCCTGTAGATGAATTAAATCCT
CTGTAAATGGGTAACGAGCGAGATACAGCCGACACTGCGGTATCAGGACC
TCCGCAGTATGGAAAGGACAAATTGCAGGCGTGGGAGACGTCTACGGGAG
ACGTCGGTAACACAAAGGCGTCGCCTTCGCTTCAGAGAAGTGCGGGAGAC
GATGCGCTCGCCCCCTCGTCGCCACTTTTACCTCTATTGGATCTGCGGCT
TGCAGAGGAGGATGAGGAGGAAAATATAACTTCTTCACTCCGCCGCGACG
GTTGTTACACCGGAAAATACCTACGGGCAAAGAGTATCAACACGCGACGA
AGGAGCCTTGCGCCCGTGTTCCGCTCTCATTGTAAGGTGGAAAGCGGGAC
CTATCGCGAGCGACGGGATGGGCAGTGTTCTGTGGCGAAAAAAGGCCCAA
GGATGGACGGCGATGTCGATGGAGGTGAAGCCAAAAGTCGTGCTATATGT
AGGCTTTGTTTCAAGATGGAACACGACACGATCCTTCGCCCTTGTGGGCA
CATGTTGTGCAGCGTGTGCGCGAGGAAGCTGAGGCTTGCGGCAGATATAT
CGGGAGAAGAACTATTCTGTCCTTGGGATCGACAGCCTGTAGATGAATTA
AATCCTCTGTAA
back to top