mRNA_H-elongata_contig55172.12925.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig55172.12925.1 vs. uniprot
Match: A0A6H5KYP0_9PHAE (RING-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KYP0_9PHAE) HSP 1 Score: 266 bits (681), Expect = 2.610e-81 Identity = 148/245 (60.41%), Postives = 175/245 (71.43%), Query Frame = 1
Query: 10 GEEEDSSISH-DGDTSSEEMLVIIAIVVGCGVLTLVILCAVRKVMDLCLLRYDPTGSISYSQEEGLPKATIERLPHTRYKKPPQPVKAQVKAAKVGSKKEGFSSSGAAGSAVAEEGAAEDVLENG---GQEGVMTDIAPVAPESTAAAGARDSTEDMCAICLIEYEHGDELRIIPGCKHQFHKDCIDPWLETKAVCAYCKAKVEARKSWCDRVVRFMSDRLGIRLVAPTTVRFSSSRRTYTNRDV 732
GEE D ++ + + + + ML+ I+IVVGCGVLTL++LC VRKVMDLCLLR DPTGS+ YSQEEGL K +IERLP TRYK+P AQ K K +G G +A EEG +G G+ G +A E GARDSTEDMCAICL+EYE GDELRIIPGC H+FHK+CIDPWLETKAVCAYCKA VEAR++ CDR+ R +S+RLGI LVAPTT+RFSSSRRTYTN DV
Sbjct: 233 GEEADEAMEEAEAEQARDVMLITISIVVGCGVLTLILLCVVRKVMDLCLLRNDPTGSLRYSQEEGLTKRSIERLPETRYKRPVSG-SAQKKGGKKTPAADGKKPDGTEAAAAGEEGGVTGSDLHGAPAGRTGAPQTAVVLAAEGGEREGARDSTEDMCAICLVEYETGDELRIIPGCGHRFHKECIDPWLETKAVCAYCKANVEARRTCCDRIYRSVSNRLGINLVAPTTIRFSSSRRTYTNEDV 476
BLAST of mRNA_H-elongata_contig55172.12925.1 vs. uniprot
Match: D8LEX7_ECTSI (RING-type domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LEX7_ECTSI) HSP 1 Score: 261 bits (666), Expect = 4.870e-81 Identity = 146/226 (64.60%), Postives = 163/226 (72.12%), Query Frame = 1
Query: 64 MLVIIAIVVGCGVLTLVILCAVRKVMDLCLLRYDPTGSISYSQEEGLPKATIERLPHTRYKKPPQPVKAQVKAAKVGSKKEGFSSSGAAGSAVAEEGAA--EDVLENGGQEGVMTDIAPVA-PESTAAAGARDSTEDMCAICLIEYEHGDELRIIPGCKHQFHKDCIDPWLETKAVCAYCKAKVEARKSWCDRVVRFMSDRLGIRLVAPTTVRFSSSRRTYTNRDV 732
ML+ I+IVVGCGVLTL++LC VRKVMDLCLLR DPTGS+ YSQEEGL K +IERLP TRYK+P AQ K K +G +A EEG D+ G A VA E GARDSTEDMCAICL+EYE GDELRIIPGC H+FHK+CIDPWLETKAVCAYCKA VEAR++ CDRV R +SDRLGI LVAPTT+RFSSSRRTYTN DV
Sbjct: 59 MLITISIVVGCGVLTLILLCVVRKVMDLCLLRNDPTGSLRYSQEEGLTKRSIERLPQTRYKRPVSGT-AQKKGDKKTPASDGKKPDDTEAAAAGEEGGVTGSDLHGPPGSSTAAPKTAVVAGAEGGEGEGARDSTEDMCAICLVEYETGDELRIIPGCGHRFHKECIDPWLETKAVCAYCKANVEARRTCCDRVYRSVSDRLGINLVAPTTIRFSSSRRTYTNEDV 283
BLAST of mRNA_H-elongata_contig55172.12925.1 vs. uniprot
Match: A0A835ZK41_9STRA (RING-type domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZK41_9STRA) HSP 1 Score: 84.7 bits (208), Expect = 1.760e-15 Identity = 67/191 (35.08%), Postives = 91/191 (47.64%), Query Frame = 1
Query: 58 EEMLVIIAIVVGCGVLTLVILCAVRKVMDLCLLRYDPTGS-ISYSQEEGLPKATIERLPHTRYKKPPQPVKAQVKAAKVGSKKE---GFSSSGAAGSAVAEEGAAEDVLENGGQ-EG--VMTDIAPVAPESTAAAGARDSTED-MCAICLIEYEHGDELRIIPGCKHQFHKDCIDPWLETKAVCAYCKAKV 606
E +LV I V C LT L +RK++ L DP + ++ S EGL I +P + P AA G+ + G + A G+A GG EG M D+ G R+ D MCAICL ++E GD+LR++P C HQ+HK C+DPWLETKA+C CK +V
Sbjct: 116 ELLLVGIYSTVACTALTCAFLIVLRKLIRLYAWWRDPAAAALASSAHEGLSSLVISWIPVVTFVSPGGDACCAAPAAAXGAGADAATGVDAEPACGAADXXXXXXXXXXXRGGDAEGXAAMGDVE----------GGREGVGDLMCAICLADFEGGDQLRVVPHCFHQYHKACLDPWLETKAICPLCKQRV 296
BLAST of mRNA_H-elongata_contig55172.12925.1 vs. uniprot
Match: A0A8J5S5L1_ZIZPA (RING-type domain-containing protein n=1 Tax=Zizania palustris TaxID=103762 RepID=A0A8J5S5L1_ZIZPA) HSP 1 Score: 77.4 bits (189), Expect = 9.420e-13 Identity = 27/47 (57.45%), Postives = 37/47 (78.72%), Query Frame = 1
Query: 469 CAICLIEYEHGDELRIIPGCKHQFHKDCIDPWLETKAVCAYCKAKVE 609
CA+CL+E+E GD+LR++P C H FH +CIDPWLET+ C C+A +E
Sbjct: 128 CAVCLMEFEDGDDLRLLPHCSHAFHPECIDPWLETRVTCPLCRANLE 174
BLAST of mRNA_H-elongata_contig55172.12925.1 vs. uniprot
Match: UPI001F5CDF93 (E3 ubiquitin-protein ligase EL5-like n=2 Tax=Lolium rigidum TaxID=89674 RepID=UPI001F5CDF93) HSP 1 Score: 73.9 bits (180), Expect = 1.370e-12 Identity = 27/52 (51.92%), Postives = 38/52 (73.08%), Query Frame = 1
Query: 445 ARDSTEDMCAICLIEYEHGDELRIIPGCKHQFHKDCIDPWLETKAVCAYCKA 600
A DST CA+CL +YEHG+ELR++PGC+H FH+ C+D WL + C C++
Sbjct: 90 AADSTR--CAVCLADYEHGEELRLLPGCRHSFHRQCVDVWLRRRPSCPLCRS 139
BLAST of mRNA_H-elongata_contig55172.12925.1 vs. uniprot
Match: UPI001F5D7E2B (E3 ubiquitin-protein ligase EL5-like n=1 Tax=Lolium rigidum TaxID=89674 RepID=UPI001F5D7E2B) HSP 1 Score: 73.9 bits (180), Expect = 1.400e-12 Identity = 33/75 (44.00%), Postives = 45/75 (60.00%), Query Frame = 1
Query: 433 AAAGARDSTEDMCAICLIEYEHGDELRIIPGCKHQFHKDCIDPWLETKAVCAYCKAKV-EARKSWCDRVVRFMSD 654
AA GA + E CA+CL+E+ HG+ R++PGC H FH CI+PWL ++ C C+A V E R + RF D
Sbjct: 98 AAGGAEEKAE--CAVCLVEFAHGEAGRLVPGCGHGFHAACIEPWLRVRSTCPLCRAAVVEERSAGLSAADRFPRD 170
BLAST of mRNA_H-elongata_contig55172.12925.1 vs. uniprot
Match: A0A0E0MPQ0_ORYPU (Uncharacterized protein n=1 Tax=Oryza punctata TaxID=4537 RepID=A0A0E0MPQ0_ORYPU) HSP 1 Score: 76.3 bits (186), Expect = 1.600e-12 Identity = 34/67 (50.75%), Postives = 42/67 (62.69%), Query Frame = 1
Query: 418 APESTAAAGARDSTEDM-CAICLIEYEHGDELRIIPGCKHQFHKDCIDPWLETKAVCAYCKAKVEAR 615
APE AAA A D + CA+CL EYE GDELR +PGC H FH+ C+D WL + C C++ AR
Sbjct: 75 APEEAAAAAAIDVGDGTGCAVCLAEYEDGDELRPLPGCGHAFHRRCVDEWLRRRPTCPVCRSSPPAR 141
BLAST of mRNA_H-elongata_contig55172.12925.1 vs. uniprot
Match: A0A0D9WKM3_9ORYZ (RING-type domain-containing protein n=1 Tax=Leersia perrieri TaxID=77586 RepID=A0A0D9WKM3_9ORYZ) HSP 1 Score: 76.3 bits (186), Expect = 2.730e-12 Identity = 37/80 (46.25%), Postives = 50/80 (62.50%), Query Frame = 1
Query: 379 GGQEGVMTDIAPVAPESTAAA--GARDSTEDMCAICLIEYEHGDELRIIPGCKHQFHKDCIDPWLETKAVCAYCKAKVEA 612
GG+EGV + P AA GAR E CA+CL ++ D LR++P C+H FH DC+D WLE+KA C C+A+V+A
Sbjct: 102 GGEEGVAKAVIESLPFFRFAALRGARQGLE--CAVCLARFDDADLLRLLPRCRHAFHLDCVDRWLESKASCPLCRARVDA 179
BLAST of mRNA_H-elongata_contig55172.12925.1 vs. uniprot
Match: UPI001F5CCC9B (E3 ubiquitin-protein ligase EL5-like n=1 Tax=Lolium rigidum TaxID=89674 RepID=UPI001F5CCC9B) HSP 1 Score: 72.4 bits (176), Expect = 4.590e-12 Identity = 28/60 (46.67%), Postives = 41/60 (68.33%), Query Frame = 1
Query: 427 STAAAGARDSTEDMCAICLIEYEHGDELRIIPGCKHQFHKDCIDPWLETKAVCAYCKAKV 606
++AA GA + E CA+CL+E+ HG+ R++PGC H FH CI+PWL ++ C C+A V
Sbjct: 95 TSAAEGAEEKAE--CAVCLVEFAHGEAGRLVPGCGHGFHAACIEPWLRVRSTCPLCRAAV 152
BLAST of mRNA_H-elongata_contig55172.12925.1 vs. uniprot
Match: A0A3B6MVV3_WHEAT (RING-type domain-containing protein n=6 Tax=Triticinae TaxID=1648030 RepID=A0A3B6MVV3_WHEAT) HSP 1 Score: 73.2 bits (178), Expect = 5.330e-12 Identity = 31/71 (43.66%), Postives = 43/71 (60.56%), Query Frame = 1
Query: 421 PESTAAAGARDSTEDMCAICLIEYEHGDELRIIPGCKHQFHKDCIDPWLETKA-VCAYCKAKVEARKSWCD 630
PE+ A + D CA+CL EY GDE+R++P C+H FH++C+D WL T+A C C+A V A D
Sbjct: 111 PEAVVADEGVGADADACAVCLAEYAAGDEVRVLPACRHGFHRECVDRWLLTRAPTCPVCRAPVAAHLDGAD 181 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig55172.12925.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig55172.12925.1 >prot_H-elongata_contig55172.12925.1 ID=prot_H-elongata_contig55172.12925.1|Name=mRNA_H-elongata_contig55172.12925.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=255bp EDGGEEEDSSISHDGDTSSEEMLVIIAIVVGCGVLTLVILCAVRKVMDLCback to top mRNA from alignment at H-elongata_contig55172:945..3244+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig55172.12925.1 ID=mRNA_H-elongata_contig55172.12925.1|Name=mRNA_H-elongata_contig55172.12925.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=2300bp|location=Sequence derived from alignment at H-elongata_contig55172:945..3244+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig55172:945..3244+ >mRNA_H-elongata_contig55172.12925.1 ID=mRNA_H-elongata_contig55172.12925.1|Name=mRNA_H-elongata_contig55172.12925.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1530bp|location=Sequence derived from alignment at H-elongata_contig55172:945..3244+ (Himanthalia elongata Himel1 dioecious)back to top |