mRNA_H-elongata_contig55165.12924.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig55165.12924.1
Unique NamemRNA_H-elongata_contig55165.12924.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
[Close]
BLAST of mRNA_H-elongata_contig55165.12924.1 vs. uniprot
Match: A0A7S2F296_9STRA (Hypothetical protein (Fragment) n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2F296_9STRA)

HSP 1 Score: 124 bits (312), Expect = 4.500e-35
Identity = 62/78 (79.49%), Postives = 69/78 (88.46%), Query Frame = 1 
Query:    1 ESPLAPAILRGLGDRSYEKRKNAALEIEALIKTLEDIHDHGRICSISSLLGQDFCASTNANHRKGGLIGLAATAIGLM 234
            ESPL PAILR LGDRSY+KRKNAALEIEALIK L++ +D  RICS+ ++LGQDF  STNANHRKGGLIGLAATAIGLM
Sbjct:   21 ESPLPPAILRSLGDRSYDKRKNAALEIEALIKALQENNDTDRICSVIAMLGQDFATSTNANHRKGGLIGLAATAIGLM 98
[Close]
BLAST of mRNA_H-elongata_contig55165.12924.1 vs. uniprot
Match: F0YGU5_AURAN (Uncharacterized protein n=2 Tax=Ochrophyta TaxID=2696291 RepID=F0YGU5_AURAN)

HSP 1 Score: 124 bits (312), Expect = 1.800e-33
Identity = 62/78 (79.49%), Postives = 69/78 (88.46%), Query Frame = 1 
Query:    1 ESPLAPAILRGLGDRSYEKRKNAALEIEALIKTLEDIHDHGRICSISSLLGQDFCASTNANHRKGGLIGLAATAIGLM 234
            ESPL PAILR LGDRSY+KRKNAALEIEALIK L++ +D  RICS+ ++LGQDF  STNANHRKGGLIGLAATAIGLM
Sbjct:   14 ESPLPPAILRSLGDRSYDKRKNAALEIEALIKALQENNDTDRICSVIAMLGQDFATSTNANHRKGGLIGLAATAIGLM 91
[Close]
BLAST of mRNA_H-elongata_contig55165.12924.1 vs. uniprot
Match: D8LEZ3_ECTSI (Vac14_Fig4_bd domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LEZ3_ECTSI)

HSP 1 Score: 130 bits (326), Expect = 2.090e-33
Identity = 67/78 (85.90%), Postives = 70/78 (89.74%), Query Frame = 1 
Query:    1 ESPLAPAILRGLGDRSYEKRKNAALEIEALIKTLEDIHDHGRICSISSLLGQDFCASTNANHRKGGLIGLAATAIGLM 234
            ESPLAPAILRGLGDRSY+KRKNAALEIEALIKTLED ++  RICSI  LLGQDF  STN NHRKGGLIGLAATAIGLM
Sbjct:   12 ESPLAPAILRGLGDRSYDKRKNAALEIEALIKTLEDNNETDRICSIIVLLGQDFATSTNPNHRKGGLIGLAATAIGLM 89
[Close]
BLAST of mRNA_H-elongata_contig55165.12924.1 vs. uniprot
Match: A0A835YJ67_9STRA (Vacuolar protein 14 C-terminal Fig4p binding-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YJ67_9STRA)

HSP 1 Score: 127 bits (320), Expect = 1.210e-32
Identity = 63/78 (80.77%), Postives = 71/78 (91.03%), Query Frame = 1 
Query:    1 ESPLAPAILRGLGDRSYEKRKNAALEIEALIKTLEDIHDHGRICSISSLLGQDFCASTNANHRKGGLIGLAATAIGLM 234
            ESPLAPAILRGLGDRSY+KRKNAALEIEA++++L++  D  RICSI +LLGQDF  STNANHRKGGLIGLAATAIGLM
Sbjct:   16 ESPLAPAILRGLGDRSYDKRKNAALEIEAVVRSLQESRDTDRICSIIALLGQDFATSTNANHRKGGLIGLAATAIGLM 93
[Close]
BLAST of mRNA_H-elongata_contig55165.12924.1 vs. uniprot
Match: F0YIP2_AURAN (Vac14_Fig4_bd domain-containing protein (Fragment) n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YIP2_AURAN)

HSP 1 Score: 124 bits (312), Expect = 1.650e-31
Identity = 62/78 (79.49%), Postives = 69/78 (88.46%), Query Frame = 1 
Query:    1 ESPLAPAILRGLGDRSYEKRKNAALEIEALIKTLEDIHDHGRICSISSLLGQDFCASTNANHRKGGLIGLAATAIGLM 234
            ESPL PAILR LGDRSY+KRKNAALEIEALIK L++ +D  RICS+ ++LGQDF  STNANHRKGGLIGLAATAIGLM
Sbjct:   14 ESPLPPAILRSLGDRSYDKRKNAALEIEALIKALQENNDTDRICSVIAMLGQDFATSTNANHRKGGLIGLAATAIGLM 91
[Close]
BLAST of mRNA_H-elongata_contig55165.12924.1 vs. uniprot
Match: A0A8J2SHG9_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2SHG9_9STRA)

HSP 1 Score: 124 bits (310), Expect = 3.090e-31
Identity = 62/78 (79.49%), Postives = 67/78 (85.90%), Query Frame = 1 
Query:    1 ESPLAPAILRGLGDRSYEKRKNAALEIEALIKTLEDIHDHGRICSISSLLGQDFCASTNANHRKGGLIGLAATAIGLM 234
            ESPL PAILR LGDRSY+KRKNAALEIEAL+KTL+   D  RICS+ +LLGQDF  STN NHRKGGLIGLAATAIGLM
Sbjct:    8 ESPLPPAILRSLGDRSYDKRKNAALEIEALVKTLQQKSDTDRICSVIALLGQDFATSTNTNHRKGGLIGLAATAIGLM 85
[Close]
BLAST of mRNA_H-elongata_contig55165.12924.1 vs. uniprot
Match: A0A7S3NMZ6_9STRA (Hypothetical protein n=1 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A7S3NMZ6_9STRA)

HSP 1 Score: 124 bits (310), Expect = 3.400e-31
Identity = 62/78 (79.49%), Postives = 69/78 (88.46%), Query Frame = 1 
Query:    1 ESPLAPAILRGLGDRSYEKRKNAALEIEALIKTLEDIHDHGRICSISSLLGQDFCASTNANHRKGGLIGLAATAIGLM 234
            ESPL PAILR LGDRSY+KRKNAALEIEALIK+L++  D  RICS+ ++LGQDF  STNANHRKGGLIGLAATAIGLM
Sbjct:   33 ESPLPPAILRSLGDRSYDKRKNAALEIEALIKSLQENTDTDRICSVIAMLGQDFATSTNANHRKGGLIGLAATAIGLM 110
[Close]
BLAST of mRNA_H-elongata_contig55165.12924.1 vs. uniprot
Match: A0A7S3XZQ6_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XZQ6_HETAK)

HSP 1 Score: 110 bits (274), Expect = 1.390e-26
Identity = 54/78 (69.23%), Postives = 64/78 (82.05%), Query Frame = 1 
Query:    1 ESPLAPAILRGLGDRSYEKRKNAALEIEALIKTLEDIHDHGRICSISSLLGQDFCASTNANHRKGGLIGLAATAIGLM 234
            ESPL+P ILRGL DRSY+KRKNAA EI  L+K L++ +D  R+CSI ++LGQDF  STN+NHRKGGLIGLA  AIGLM
Sbjct:   13 ESPLSPGILRGLSDRSYDKRKNAAGEIVELVKHLQEDNDTDRVCSIVAMLGQDFATSTNSNHRKGGLIGLAGCAIGLM 90
[Close]
BLAST of mRNA_H-elongata_contig55165.12924.1 vs. uniprot
Match: W7TIC2_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TIC2_9STRA)

HSP 1 Score: 102 bits (253), Expect = 8.370e-26
Identity = 50/78 (64.10%), Postives = 61/78 (78.21%), Query Frame = 1 
Query:    1 ESPLAPAILRGLGDRSYEKRKNAALEIEALIKTLEDIHDHGRICSISSLLGQDFCASTNANHRKGGLIGLAATAIGLM 234
            E P+ P I+RGLGDRSYEKRKNAAL++E  +K L + +D  R+ +   LLGQ+FC STN+NHRKGGLI LAA AIGLM
Sbjct:   77 EPPIPPHIIRGLGDRSYEKRKNAALDLEQHVKYLTERNDKTRLQATLHLLGQEFCTSTNSNHRKGGLIALAAAAIGLM 154
[Close]
BLAST of mRNA_H-elongata_contig55165.12924.1 vs. uniprot
Match: A0A7S2PWH2_9STRA (Hypothetical protein (Fragment) n=1 Tax=Skeletonema marinoi TaxID=267567 RepID=A0A7S2PWH2_9STRA)

HSP 1 Score: 106 bits (265), Expect = 4.080e-25
Identity = 53/78 (67.95%), Postives = 63/78 (80.77%), Query Frame = 1 
Query:    1 ESPLAPAILRGLGDRSYEKRKNAALEIEALIKTLEDIHDHGRICSISSLLGQDFCASTNANHRKGGLIGLAATAIGLM 234
            ESPL P + R LGDRSY+KRKNAALEIE L+K+L + H+   I SI S+L +DFC S NAN+RKGGLIG+AATAIGLM
Sbjct:  186 ESPLPPIVQRSLGDRSYDKRKNAALEIEQLVKSLSEAHNVPMIQSIISVLAKDFCTSMNANYRKGGLIGIAATAIGLM 263
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig55165.12924.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7S2F296_9STRA4.500e-3579.49Hypothetical protein (Fragment) n=1 Tax=Dictyocha ... [more]
F0YGU5_AURAN1.800e-3379.49Uncharacterized protein n=2 Tax=Ochrophyta TaxID=2... [more]
D8LEZ3_ECTSI2.090e-3385.90Vac14_Fig4_bd domain-containing protein n=2 Tax=Ec... [more]
A0A835YJ67_9STRA1.210e-3280.77Vacuolar protein 14 C-terminal Fig4p binding-domai... [more]
F0YIP2_AURAN1.650e-3179.49Vac14_Fig4_bd domain-containing protein (Fragment)... [more]
A0A8J2SHG9_9STRA3.090e-3179.49Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
A0A7S3NMZ6_9STRA3.400e-3179.49Hypothetical protein n=1 Tax=Aureoumbra lagunensis... [more]
A0A7S3XZQ6_HETAK1.390e-2669.23Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
W7TIC2_9STRA8.370e-2664.10Uncharacterized protein (Fragment) n=1 Tax=Nannoch... [more]
A0A7S2PWH2_9STRA4.080e-2567.95Hypothetical protein (Fragment) n=1 Tax=Skeletonem... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig55165contigH-elongata_contig55165:745..978 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score130.2
Seed ortholog evalue4.2e-28
Seed eggNOG ortholog2880.D8LEZ3
Preferred nameVAC14
KEGG koko:K10875,ko:K15305
KEGG Pathwayko03440,ko05166,ko05203,map03440,map05166,map05203
GOsGO:0000139,GO:0000306,GO:0000322,GO:0000323,GO:0000324,GO:0000329,GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005768,GO:0005769,GO:0005770,GO:0005773,GO:0005774,GO:0005794,GO:0005942,GO:0006629,GO:0006644,GO:0006650,GO:0006661,GO:0006793,GO:0006796,GO:0006950,GO:0006970,GO:0007154,GO:0007165,GO:0007267,GO:0008047,GO:0008150,GO:0008152,GO:0008610,GO:0008654,GO:0009058,GO:0009628,GO:0009893,GO:0009987,GO:0010008,GO:0010562,GO:0012505,GO:0016020,GO:0019207,GO:0019209,GO:0019220,GO:0019222,GO:0019637,GO:0019898,GO:0023052,GO:0030154,GO:0030234,GO:0030674,GO:0031090,GO:0031312,GO:0031323,GO:0031325,GO:0031410,GO:0031901,GO:0031902,GO:0031982,GO:0031984,GO:0032502,GO:0032991,GO:0033674,GO:0035032,GO:0038023,GO:0042325,GO:0042327,GO:0043085,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043549,GO:0044093,GO:0044237,GO:0044238,GO:0044249,GO:0044255,GO:0044422,GO:0044424,GO:0044425,GO:0044431,GO:0044433,GO:0044437,GO:0044440,GO:0044444,GO:0044446,GO:0044464,GO:0045017,GO:0045165,GO:0045168,GO:0045937,GO:0046331,GO:0046474,GO:0046486,GO:0046488,GO:0048518,GO:0048522,GO:0048869,GO:0050789,GO:0050790,GO:0050794,GO:0050896,GO:0051174,GO:0051338,GO:0051347,GO:0051716,GO:0060089,GO:0060090,GO:0061695,GO:0065007,GO:0065009,GO:0070772,GO:0071704,GO:0090407,GO:0097708,GO:0098588,GO:0098772,GO:0098791,GO:0098796,GO:0098805,GO:0098852,GO:1901576,GO:1902494,GO:1990234
EggNOG free text desc.phosphatidylinositol biosynthetic process
EggNOG OGsKOG0212@1,KOG0212@2759
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko03400
Hectar predicted targeting categoryother localisation
Exons1
Model size234
Cds size234
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930899.5848107-CDS-H-elongata_contig55165:744..9781622930899.5848107-CDS-H-elongata_contig55165:744..978Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig55165 745..978 -
1691679616.9323592-CDS-H-elongata_contig55165:744..9781691679616.9323592-CDS-H-elongata_contig55165:744..978Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig55165 745..978 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig55165.12924.1prot_H-elongata_contig55165.12924.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig55165 745..978 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig55165.12924.1

>prot_H-elongata_contig55165.12924.1 ID=prot_H-elongata_contig55165.12924.1|Name=mRNA_H-elongata_contig55165.12924.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=78bp
ESPLAPAILRGLGDRSYEKRKNAALEIEALIKTLEDIHDHGRICSISSLL
GQDFCASTNANHRKGGLIGLAATAIGLM
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mRNA from alignment at H-elongata_contig55165:745..978-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig55165.12924.1 ID=mRNA_H-elongata_contig55165.12924.1|Name=mRNA_H-elongata_contig55165.12924.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=234bp|location=Sequence derived from alignment at H-elongata_contig55165:745..978- (Himanthalia elongata Himel1 dioecious)
GAATCTCCTCTAGCCCCCGCGATTCTGAGAGGGCTGGGAGATAGGTCTTA
CGAAAAGCGCAAGAATGCAGCGCTCGAGATCGAGGCCCTGATTAAAACGC
TTGAGGACATCCACGACCATGGCCGAATTTGCTCCATCTCATCGTTGCTG
GGTCAGGATTTTTGCGCATCTACCAACGCCAATCACCGAAAAGGTGGCCT
CATTGGGCTTGCGGCAACAGCTATCGGGTTGATG
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Coding sequence (CDS) from alignment at H-elongata_contig55165:745..978-

>mRNA_H-elongata_contig55165.12924.1 ID=mRNA_H-elongata_contig55165.12924.1|Name=mRNA_H-elongata_contig55165.12924.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=468bp|location=Sequence derived from alignment at H-elongata_contig55165:745..978- (Himanthalia elongata Himel1 dioecious)
GAATCTCCTCTAGCCCCCGCGATTCTGAGAGGGCTGGGAGATAGGTCTTA
CGAAAAGCGCAAGAATGCAGCGCTCGAGATCGAGGCCCTGATTAAAACGC
TTGAGGACATCCACGACCATGGCCGAATTTGCTCCATCTCATCGTTGCTG
GGTCAGGATTTTTGCGCATCTACCAACGCCAATCACCGAAAAGGTGGCCT
CATTGGGCTTGCGGCAACAGCTATCGGGTTGATGGAATCTCCTCTAGCCC
CCGCGATTCTGAGAGGGCTGGGAGATAGGTCTTACGAAAAGCGCAAGAAT
GCAGCGCTCGAGATCGAGGCCCTGATTAAAACGCTTGAGGACATCCACGA
CCATGGCCGAATTTGCTCCATCTCATCGTTGCTGGGTCAGGATTTTTGCG
CATCTACCAACGCCAATCACCGAAAAGGTGGCCTCATTGGGCTTGCGGCA
ACAGCTATCGGGTTGATG
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