mRNA_H-elongata_contig55152.12923.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig55152.12923.1
Unique NamemRNA_H-elongata_contig55152.12923.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig55152.12923.1 vs. uniprot
Match: D8LFD1_ECTSI (PfkB-type carbohydrate kinase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LFD1_ECTSI)

HSP 1 Score: 89.0 bits (219), Expect = 1.960e-17
Identity = 42/53 (79.25%), Postives = 48/53 (90.57%), Query Frame = 2 
Query:  278 SQRPRVLGLGSAGVDFIAIVDRYPEADAKIRTESLEVMGGGNCGNTLSA*ARL 436
            S RPRVLGLGSAGVDFIA VDRYP AD K++T+SL+V+GGGNCGNTLSA +RL
Sbjct:   92 SGRPRVLGLGSAGVDFIAAVDRYPTADEKVQTQSLQVLGGGNCGNTLSAASRL 144
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BLAST of mRNA_H-elongata_contig55152.12923.1 vs. uniprot
Match: C1E1D8_MICCC (PfkB family carbohydrate kinase n=1 Tax=Micromonas commoda (strain RCC299 / NOUM17 / CCMP2709) TaxID=296587 RepID=C1E1D8_MICCC)

HSP 1 Score: 71.2 bits (173), Expect = 7.140e-11
Identity = 34/59 (57.63%), Postives = 45/59 (76.27%), Query Frame = 2 
Query:  266 DAMKSQ--RPRVLGLGSAGVDFIAIVDRYPEADAKIRTESLEVMGGGNCGNTLSA*ARL 436
            DA K++   PRV+G+GSAGVD++A V  +PE D K+RT++ E  GGGNCGN L+A ARL
Sbjct:   58 DAWKARLNAPRVVGVGSAGVDYLASVAAFPEPDQKLRTDAFETQGGGNCGNALTAVARL 116
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BLAST of mRNA_H-elongata_contig55152.12923.1 vs. uniprot
Match: A0A7S1T7S5_9RHOD (Hypothetical protein n=1 Tax=Compsopogon caeruleus TaxID=31354 RepID=A0A7S1T7S5_9RHOD)

HSP 1 Score: 70.1 bits (170), Expect = 1.610e-10
Identity = 29/52 (55.77%), Postives = 41/52 (78.85%), Query Frame = 2 
Query:  284 RPRVLGLGSAGVDFIAIVDRYPEADAKIRTESLEVMGGGNCGNTLSA*ARLR 439
            RP VLGLG+AG+DF+A+V  +P+ D KIRT   +++GGGNC NTL+  +RL+
Sbjct:   85 RPHVLGLGTAGLDFLAVVSSFPQPDTKIRTSEFKMLGGGNCANTLTGLSRLQ 136
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BLAST of mRNA_H-elongata_contig55152.12923.1 vs. uniprot
Match: A0A2V0NPK3_9CHLO (PfkB domain-containing protein n=1 Tax=Raphidocelis subcapitata TaxID=307507 RepID=A0A2V0NPK3_9CHLO)

HSP 1 Score: 66.2 bits (160), Expect = 4.360e-10
Identity = 30/52 (57.69%), Postives = 40/52 (76.92%), Query Frame = 2 
Query:  281 QRPRVLGLGSAGVDFIAIVDRYPEADAKIRTESLEVMGGGNCGNTLSA*ARL 436
            +R +V+G GS GVD++A V  YP+ D K+RT++LEV GGGNC N L+A ARL
Sbjct:   41 RRIKVVGCGSCGVDYLASVAAYPKPDEKLRTDTLEVQGGGNCANALTAAARL 92
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BLAST of mRNA_H-elongata_contig55152.12923.1 vs. uniprot
Match: UPI001CC728BD (hypothetical protein n=1 Tax=Klebsiella aerogenes TaxID=548 RepID=UPI001CC728BD)

HSP 1 Score: 62.8 bits (151), Expect = 1.140e-9
Identity = 27/45 (60.00%), Postives = 36/45 (80.00%), Query Frame = 2 
Query:  290 RVLGLGSAGVDFIAIVDRYPEADAKIRTESLEVMGGGNCGNTLSA 424
            +++G+GSA VD++A V  YP+ D K+RTE LEV GGGNCGN L+A
Sbjct:   10 KIVGMGSACVDYLAQVAAYPQPDDKLRTERLEVQGGGNCGNALTA 54
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BLAST of mRNA_H-elongata_contig55152.12923.1 vs. uniprot
Match: A0A7S0ZEC5_9RHOD (Hypothetical protein (Fragment) n=1 Tax=Timspurckia oligopyrenoides TaxID=708627 RepID=A0A7S0ZEC5_9RHOD)

HSP 1 Score: 64.3 bits (155), Expect = 3.970e-9
Identity = 31/55 (56.36%), Postives = 36/55 (65.45%), Query Frame = 2 
Query:  272 MKSQRPRVLGLGSAGVDFIAIVDRYPEADAKIRTESLEVMGGGNCGNTLSA*ARL 436
            M    PRVL LGSAG+D +A VD+YP  D KIRT  ++ MGGGN  NT S   RL
Sbjct:   47 MNGNTPRVLCLGSAGIDMLARVDQYPSPDQKIRTTQVDYMGGGNAANTASCLQRL 101
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BLAST of mRNA_H-elongata_contig55152.12923.1 vs. uniprot
Match: A0A5J4XD92_9CHLO (Carbohydrate kinase n=1 Tax=Trebouxia sp. A1-2 TaxID=2608996 RepID=A0A5J4XD92_9CHLO)

HSP 1 Score: 65.9 bits (159), Expect = 4.330e-9
Identity = 33/83 (39.76%), Postives = 50/83 (60.24%), Query Frame = 2 
Query:  218 SRKPFFVR----------VSMAGTDGDAMKSQRPRVLGLGSAGVDFIAIVDRYPEADAKIRTESLEVMGGGNCGNTLSA*ARL 436
            +R PF VR           S     G   ++++P+++GLGS G+D++A V  +P+ D K+RT+ +E  GGGNC N L+A ARL
Sbjct:    7 NRTPFGVRRQAHQRKKSLQSCCSAAGHTDEARKPKIVGLGSVGLDYLAQVAAFPKPDEKLRTKQMETRGGGNCANALTAAARL 89
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BLAST of mRNA_H-elongata_contig55152.12923.1 vs. uniprot
Match: UPI0018AF4BEC (ketohexokinase-like n=1 Tax=Dioscorea cayennensis subsp. rotundata TaxID=55577 RepID=UPI0018AF4BEC)

HSP 1 Score: 65.9 bits (159), Expect = 4.580e-9
Identity = 28/48 (58.33%), Postives = 38/48 (79.17%), Query Frame = 2 
Query:  293 VLGLGSAGVDFIAIVDRYPEADAKIRTESLEVMGGGNCGNTLSA*ARL 436
            VLG G A VD++A+VD +P  D K+RTE+++V+GGGNCGN L+  ARL
Sbjct:   64 VLGCGMASVDYVALVDAFPVPDEKVRTENVQVLGGGNCGNALTCAARL 111
[Close]
BLAST of mRNA_H-elongata_contig55152.12923.1 vs. uniprot
Match: A0A1D1ZX35_AUXPR (PfkB domain-containing protein n=1 Tax=Auxenochlorella protothecoides TaxID=3075 RepID=A0A1D1ZX35_AUXPR)

HSP 1 Score: 65.5 bits (158), Expect = 4.730e-9
Identity = 34/63 (53.97%), Postives = 40/63 (63.49%), Query Frame = 2 
Query:  263 GDAMKSQRPR-----VLGLGSAGVDFIAIVDRYPEADAKIRTESLEVMGGGNCGNTLSA*ARL 436
            G AMK  RP      VLGLGS G+D +A+VD +P  D KIR   L + GGGNC N L+A ARL
Sbjct:   54 GSAMKEPRPAQLDCAVLGLGSCGLDTLALVDSFPAPDEKIRARRLLIQGGGNCANALTAAARL 116
[Close]
BLAST of mRNA_H-elongata_contig55152.12923.1 vs. uniprot
Match: A0A1D2A1F7_AUXPR (Uncharacterized protein n=2 Tax=Auxenochlorella protothecoides TaxID=3075 RepID=A0A1D2A1F7_AUXPR)

HSP 1 Score: 65.5 bits (158), Expect = 6.430e-9
Identity = 34/63 (53.97%), Postives = 40/63 (63.49%), Query Frame = 2 
Query:  263 GDAMKSQRPR-----VLGLGSAGVDFIAIVDRYPEADAKIRTESLEVMGGGNCGNTLSA*ARL 436
            G AMK  RP      VLGLGS G+D +A+VD +P  D KIR   L + GGGNC N L+A ARL
Sbjct:   54 GSAMKEPRPAQLDCAVLGLGSCGLDTLALVDSFPAPDEKIRARRLLIQGGGNCANALTAAARL 116
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig55152.12923.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LFD1_ECTSI1.960e-1779.25PfkB-type carbohydrate kinase n=1 Tax=Ectocarpus s... [more]
C1E1D8_MICCC7.140e-1157.63PfkB family carbohydrate kinase n=1 Tax=Micromonas... [more]
A0A7S1T7S5_9RHOD1.610e-1055.77Hypothetical protein n=1 Tax=Compsopogon caeruleus... [more]
A0A2V0NPK3_9CHLO4.360e-1057.69PfkB domain-containing protein n=1 Tax=Raphidoceli... [more]
UPI001CC728BD1.140e-960.00hypothetical protein n=1 Tax=Klebsiella aerogenes ... [more]
A0A7S0ZEC5_9RHOD3.970e-956.36Hypothetical protein (Fragment) n=1 Tax=Timspurcki... [more]
A0A5J4XD92_9CHLO4.330e-939.76Carbohydrate kinase n=1 Tax=Trebouxia sp. A1-2 Tax... [more]
UPI0018AF4BEC4.580e-958.33ketohexokinase-like n=1 Tax=Dioscorea cayennensis ... [more]
A0A1D1ZX35_AUXPR4.730e-953.97PfkB domain-containing protein n=1 Tax=Auxenochlor... [more]
A0A1D2A1F7_AUXPR6.430e-953.97Uncharacterized protein n=2 Tax=Auxenochlorella pr... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig55152contigH-elongata_contig55152:2279..3520 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score87.0
Seed ortholog evalue6.6e-15
Seed eggNOG ortholog2880.D8LFD1
EggNOG free text desc.Belongs to the carbohydrate kinase PfkB family
EggNOG OGsKOG2947@1,KOG2947@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categorysignal peptide
Exons3
Model size640
Cds size375
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig55152.12923.1prot_H-elongata_contig55152.12923.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig55152 2331..3307 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930899.4937258-UTR-H-elongata_contig55152:2278..23301622930899.4937258-UTR-H-elongata_contig55152:2278..2330Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig55152 2279..2330 +
1691679616.8837273-UTR-H-elongata_contig55152:2278..23301691679616.8837273-UTR-H-elongata_contig55152:2278..2330Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig55152 2279..2330 +
1622930899.5471237-UTR-H-elongata_contig55152:3307..35201622930899.5471237-UTR-H-elongata_contig55152:3307..3520Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig55152 3308..3520 +
1691679616.9223113-UTR-H-elongata_contig55152:3307..35201691679616.9223113-UTR-H-elongata_contig55152:3307..3520Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig55152 3308..3520 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930899.5121646-CDS-H-elongata_contig55152:2330..24211622930899.5121646-CDS-H-elongata_contig55152:2330..2421Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig55152 2331..2421 +
1691679616.8932252-CDS-H-elongata_contig55152:2330..24211691679616.8932252-CDS-H-elongata_contig55152:2330..2421Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig55152 2331..2421 +
1622930899.5240197-CDS-H-elongata_contig55152:2722..29211622930899.5240197-CDS-H-elongata_contig55152:2722..2921Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig55152 2723..2921 +
1691679616.9013286-CDS-H-elongata_contig55152:2722..29211691679616.9013286-CDS-H-elongata_contig55152:2722..2921Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig55152 2723..2921 +
1622930899.535666-CDS-H-elongata_contig55152:3222..33071622930899.535666-CDS-H-elongata_contig55152:3222..3307Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig55152 3223..3307 +
1691679616.9097867-CDS-H-elongata_contig55152:3222..33071691679616.9097867-CDS-H-elongata_contig55152:3222..3307Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig55152 3223..3307 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig55152.12923.1

>prot_H-elongata_contig55152.12923.1 ID=prot_H-elongata_contig55152.12923.1|Name=mRNA_H-elongata_contig55152.12923.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=125bp
MGTKVGLVVIALAQAGVSAWGWTGPIGVTRDTLTSSRGAAPAPTPCIDDI
LGSGRSRKPFFVRVSMAGTDGDAMKSQRPRVLGLGSAGVDFIAIVDRYPE
ADAKIRTESLEVMGGGNCGNTLSA*
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mRNA from alignment at H-elongata_contig55152:2279..3520+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig55152.12923.1 ID=mRNA_H-elongata_contig55152.12923.1|Name=mRNA_H-elongata_contig55152.12923.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1242bp|location=Sequence derived from alignment at H-elongata_contig55152:2279..3520+ (Himanthalia elongata Himel1 dioecious)
CACAGCATCTAGCAATATTACTAAAGCGCAGTCAGTAGTTGAGATCTGCT
GAATGGGCACCAAAGTCGGGTTGGTGGTCATCGCTTTGGCCCAAGCTGGC
GTCAGTGCTTGGGGCTGGACAGGGCCTATCGGCGTTACGAGAGGTTCGAC
GACGAAGAAGTGTATAGCAATATACATTCCTTCTGTTTGAGCATGAACCT
CCCCTGGGCGCGATAATAACAGCCAATGTTGAATGACCTCACAAGTCCCT
CGACGGATCGAACCTCGAAGGATCGAAGGAATCATTTGCGAGAAATGGTT
GCGATAAAGTCGATGGCCATTGCCGACCTTCATCATTAGGGTGTCAGAGC
TCGTTGGTGGTAATACTCTTGTGTATCCACGATCTCGTGTTCAAATTGAC
GACGTTCCCTTTCCCTCTCTCCGTTGCTGTTATGTTTTCGTTAGATACGT
TGACCTCAAGCCGTGGTGCGGCGCCAGCCCCAACACCCTGTATCGACGAC
ATTCTGGGGAGTGGCCGCTCCAGAAAACCCTTTTTTGTTCGTGTTTCCAT
GGCTGGCACAGACGGAGATGCAATGAAGAGCCAGCGACCGCGGGTGCTGG
GTCTAGGCTCGGCCGGGGTAGATTTTATCGCCATCGTCGACAGGTAAAAC
TGATGAGTGTACAATTAAGAGGAGGCCGCAAGTTATCGCCCCTCCCCCCC
GTCTCTTCTGTATCTCAAGGGCGGATATATGATGATTCTTTGGCTGGGGG
GATGGGGGGGGGGAGACTGGGATGCAGAGGGGTTTTCCGGATGAATTGCG
TTAATATATATGACATACTCCCTTCCACATAAATAATCTTGGCTAAACTG
CTGACTGTGGCGCTGTCCCTCCCCCCATTCCGTATCTCCTTCCCGCGAAT
GTATCCCGCTCTGGTGGTACCGAGACGGTGTCGCGAAAGAACAGATACCC
GGAGGCAGACGCGAAAATACGGACGGAGTCTCTGGAAGTGATGGGTGGGG
GTAACTGCGGCAACACTCTCTCTGCGTGAGCCCGCTTGCGCCGGATACGA
CGAGAGTAATCCCTTAGGTCGATTGCCCTGATTGCGGTTTTTCTTTTTAA
AACGTAGTGTGATGTACTATGTAGCTCTAAAACGGAGAAGAAGTACTACG
TATGTAGAAAGCTCACTATTGTAGGGTATAGCATTGCACGGAGATCGAGG
CAGAGTCGAAGGGGAGGTGTCTTCTGTTAAATCTTAACGGGC
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Coding sequence (CDS) from alignment at H-elongata_contig55152:2279..3520+

>mRNA_H-elongata_contig55152.12923.1 ID=mRNA_H-elongata_contig55152.12923.1|Name=mRNA_H-elongata_contig55152.12923.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=750bp|location=Sequence derived from alignment at H-elongata_contig55152:2279..3520+ (Himanthalia elongata Himel1 dioecious)
ATGGGCACCAAAGTCGGGTTGGTGGTCATCGCTTTGGCCCAAGCTGGCGT
CAGTGCTTGGGGCTGGACAGGGCCTATCGGCGTTACGAGAGATGGGCACC
AAAGTCGGGTTGGTGGTCATCGCTTTGGCCCAAGCTGGCGTCAGTGCTTG
GGGCTGGACAGGGCCTATCGGCGTTACGAGAGATACGTTGACCTCAAGCC
GTGGTGCGGCGCCAGCCCCAACACCCTGTATCGACGACATTCTGGGGAGT
GGCCGCTCCAGAAAACCCTTTTTTGTTCGTGTTTCCATGGCTGGCACAGA
CGGAGATGCAATGAAGAGCCAGCGACCGCGGGTGCTGGGTCTAGGCTCGG
CCGGGGTAGATTTTATCGCCATCGTCGACAGATACGTTGACCTCAAGCCG
TGGTGCGGCGCCAGCCCCAACACCCTGTATCGACGACATTCTGGGGAGTG
GCCGCTCCAGAAAACCCTTTTTTGTTCGTGTTTCCATGGCTGGCACAGAC
GGAGATGCAATGAAGAGCCAGCGACCGCGGGTGCTGGGTCTAGGCTCGGC
CGGGGTAGATTTTATCGCCATCGTCGACAGATACCCGGAGGCAGACGCGA
AAATACGGACGGAGTCTCTGGAAGTGATGGGTGGGGGTAACTGCGGCAAC
ACTCTCTCTGCGTGAATACCCGGAGGCAGACGCGAAAATACGGACGGAGT
CTCTGGAAGTGATGGGTGGGGGTAACTGCGGCAACACTCTCTCTGCGTGA
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