mRNA_H-elongata_contig55146.12921.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig55146.12921.1
Unique NamemRNA_H-elongata_contig55146.12921.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig55146.12921.1 vs. uniprot
Match: A0A6H5J4M4_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J4M4_9PHAE)

HSP 1 Score: 177 bits (450), Expect = 3.690e-49
Identity = 87/129 (67.44%), Postives = 104/129 (80.62%), Query Frame = 1
Query:    1 YAASTILKWAREYRALGDFKRDLRGLHERDWILSEADLQQDIIGWLKTQKCVTVKDTRDYINGTLFKSETGDLARLLSTYQLTLSVSMSTTHSWMKALGYKYERATKSFYTDGHEKPDVVEYRRDYINI 387
            YAASTIL W R++R  G FKRD RG+HERDWI+SE DL+ ++I W++TQK +TVKD ++YIN  LF  E GDL+RLLS YQ+ L VSM+TTHSWM ALG KYERATKSFYTDGHEK DVV YR  YI++
Sbjct:  206 YAASTILGWLRDFRGHGGFKRDSRGVHERDWIMSEEDLKDELIKWMRTQKRLTVKDVQNYINQWLFAYEIGDLSRLLS-YQVNLPVSMATTHSWMIALGCKYERATKSFYTDGHEKKDVVVYRGKYIDV 333          
BLAST of mRNA_H-elongata_contig55146.12921.1 vs. uniprot
Match: A0A6H5JMT5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JMT5_9PHAE)

HSP 1 Score: 175 bits (443), Expect = 1.140e-48
Identity = 85/129 (65.89%), Postives = 104/129 (80.62%), Query Frame = 1
Query:    1 YAASTILKWAREYRALGDFKRDLRGLHERDWILSEADLQQDIIGWLKTQKCVTVKDTRDYINGTLFKSETGDLARLLSTYQLTLSVSMSTTHSWMKALGYKYERATKSFYTDGHEKPDVVEYRRDYINI 387
            YAASTIL W R++R  G  KRD RG+HERDWI+SE DL+ +++ W++TQK +TVKD ++YIN  LF +E GDL+RLLS YQ+ L VSM+TTHSWM ALG KYERATKSFYTDGHEK DVV YR  YI++
Sbjct:  268 YAASTILGWLRDFRGHGGSKRDSRGVHERDWIMSEEDLKDELVMWMRTQKRLTVKDVQNYINQWLFANEIGDLSRLLS-YQVNLPVSMATTHSWMIALGCKYERATKSFYTDGHEKKDVVVYRGKYIDV 395          
BLAST of mRNA_H-elongata_contig55146.12921.1 vs. uniprot
Match: A0A6H5JRV8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRV8_9PHAE)

HSP 1 Score: 174 bits (440), Expect = 1.460e-48
Identity = 85/129 (65.89%), Postives = 103/129 (79.84%), Query Frame = 1
Query:    1 YAASTILKWAREYRALGDFKRDLRGLHERDWILSEADLQQDIIGWLKTQKCVTVKDTRDYINGTLFKSETGDLARLLSTYQLTLSVSMSTTHSWMKALGYKYERATKSFYTDGHEKPDVVEYRRDYINI 387
            YAASTIL W R++R  G FK D RG+HERDWI+SE DL+ ++I W++ QK +TVKD ++YIN  LF +E GDL+RLLS YQ+ L VSM+TTHSWM ALG KYERATKSFYTDGHEK DVV YR  YI++
Sbjct:  128 YAASTILGWLRDFRGHGGFKLDSRGVHERDWIMSEEDLKDELIKWMRRQKRLTVKDVQNYINQWLFANEIGDLSRLLS-YQVNLPVSMATTHSWMIALGCKYERATKSFYTDGHEKKDVVVYRGKYIDV 255          
BLAST of mRNA_H-elongata_contig55146.12921.1 vs. uniprot
Match: A0A6H5K7P7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K7P7_9PHAE)

HSP 1 Score: 175 bits (443), Expect = 3.070e-48
Identity = 85/129 (65.89%), Postives = 104/129 (80.62%), Query Frame = 1
Query:    1 YAASTILKWAREYRALGDFKRDLRGLHERDWILSEADLQQDIIGWLKTQKCVTVKDTRDYINGTLFKSETGDLARLLSTYQLTLSVSMSTTHSWMKALGYKYERATKSFYTDGHEKPDVVEYRRDYINI 387
            YAASTIL W R++R  G FKRD RG+HERDWI+SE D + ++I W++TQK +TVKD ++YIN  LF ++ GDL+RLLS YQ+ L VSM+TTHSWM ALG KYERATKSFYTDGHEK DVV YR  YI++
Sbjct:  383 YAASTILGWLRDFRGHGGFKRDSRGVHERDWIMSEEDPKDELIKWMRTQKRLTVKDVQNYINQWLFANQIGDLSRLLS-YQVNLPVSMATTHSWMIALGCKYERATKSFYTDGHEKKDVVVYRGKYIDV 510          
BLAST of mRNA_H-elongata_contig55146.12921.1 vs. uniprot
Match: A0A6H5JVN6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JVN6_9PHAE)

HSP 1 Score: 172 bits (437), Expect = 1.900e-47
Identity = 85/123 (69.11%), Postives = 100/123 (81.30%), Query Frame = 1
Query:    1 YAASTILKWAREYRALGDFKRDLRGLHERDWILSEADLQQDIIGWLKTQKCVTVKDTRDYINGTLFKSETGDLARLLSTYQLTLSVSMSTTHSWMKALGYKYERATKSFYTDGHEKPDVVEYR 369
            YAASTIL W R++R  G FKRD RG+HERDWI+SE DL+  +I W++TQK +TVKD ++YIN  LF +E GDL+RLLS YQ+ L VSM+TTHSWM ALG KYERATKSFYTDGHEK DVV YR
Sbjct:  317 YAASTILGWLRDFRGHGGFKRDSRGVHERDWIMSEEDLKDQLIKWMRTQKRLTVKDVQNYINQWLFANEIGDLSRLLS-YQVNLPVSMATTHSWMIALGCKYERATKSFYTDGHEKKDVVVYR 438          
BLAST of mRNA_H-elongata_contig55146.12921.1 vs. uniprot
Match: A0A6H5JI16_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JI16_9PHAE)

HSP 1 Score: 169 bits (428), Expect = 5.580e-47
Identity = 82/129 (63.57%), Postives = 103/129 (79.84%), Query Frame = 1
Query:    1 YAASTILKWAREYRALGDFKRDLRGLHERDWILSEADLQQDIIGWLKTQKCVTVKDTRDYINGTLFKSETGDLARLLSTYQLTLSVSMSTTHSWMKALGYKYERATKSFYTDGHEKPDVVEYRRDYINI 387
            YAAST+L W R++R  G FKRD R +HERDWI+S+ DL+ ++I W++TQK +TVKD ++YIN  LF +E GDL+RLLS +Q+ L VSM TTHSW+ ALG KYERATKSFYTDGHEK DVV YR  YI++
Sbjct:  226 YAASTVLGWLRDFRGHGGFKRDSRRVHERDWIMSKEDLKDELIKWMRTQKRLTVKDVQNYINQWLFANEIGDLSRLLS-HQVNLPVSMVTTHSWIIALGCKYERATKSFYTDGHEKKDVVVYRGKYIDV 353          
BLAST of mRNA_H-elongata_contig55146.12921.1 vs. uniprot
Match: A0A6H5KP29_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KP29_9PHAE)

HSP 1 Score: 153 bits (386), Expect = 3.370e-43
Identity = 75/118 (63.56%), Postives = 93/118 (78.81%), Query Frame = 1
Query:   34 EYRALGDFKRDLRGLHERDWILSEADLQQDIIGWLKTQKCVTVKDTRDYINGTLFKSETGDLARLLSTYQLTLSVSMSTTHSWMKALGYKYERATKSFYTDGHEKPDVVEYRRDYINI 387
            ++R  G FKRD RG+H RDWI+SE DL+ ++I W++TQK +TVKD ++YIN  LF SE GDL+ LLS YQ+ L VSMSTTHSWM ALG KYE+ATKSFYTDGHE+  VV YR  YI++
Sbjct:   51 DFRGHGGFKRDSRGVHRRDWIMSEEDLKDELIKWMRTQKRLTVKDVQNYINQWLFASEIGDLSTLLS-YQVNLPVSMSTTHSWMIALGCKYEQATKSFYTDGHEEKVVVVYRGKYIDV 167          
BLAST of mRNA_H-elongata_contig55146.12921.1 vs. uniprot
Match: A0A6H5L611_9PHAE (Uncharacterized protein n=8 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L611_9PHAE)

HSP 1 Score: 152 bits (383), Expect = 3.820e-40
Identity = 74/127 (58.27%), Postives = 93/127 (73.23%), Query Frame = 1
Query:    1 YAASTILKWAREYRALGDFKRDLRGLHERDWILSEADLQQDIIGWLKTQKCVTVKDTRDYINGTLFKSETGDLARLLSTYQLTLSVSMSTTHSWMKALGYKYERATKSFYTDGHEKPDVVEYRRDYI 381
            YA STIL+W R++R  G F+RD RG HE DWI+SE DL+  ++ W+ +Q   T+KD   YING L + +  DL+RL + YQ+ L VSMSTTHSWM  LG +YERATKSFYTD HEK +VVEYR +YI
Sbjct:  314 YAPSTILRWLRDFRKEGGFRRDARGAHEPDWIMSEEDLKSALLAWMISQPRFTIKDVCKYINGPLLQDDKEDLSRLHA-YQVNLPVSMSTTHSWMIRLGCRYERATKSFYTDTHEKKEVVEYRGEYI 439          
BLAST of mRNA_H-elongata_contig55146.12921.1 vs. uniprot
Match: A0A6H5JMQ7_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JMQ7_9PHAE)

HSP 1 Score: 142 bits (359), Expect = 4.870e-37
Identity = 68/127 (53.54%), Postives = 87/127 (68.50%), Query Frame = 1
Query:    1 YAASTILKWAREYRALGDFKRDLRGLHERDWILSEADLQQDIIGWLKTQKCVTVKDTRDYINGTLFKSETGDLARLLSTYQLTLSVSMSTTHSWMKALGYKYERATKSFYTDGHEKPDVVEYRRDYI 381
            YA STIL+W R++R  G F+RD RG HE DWI+SE DL+  ++ W+ +Q   T+K+   YING L + +  +    L  YQ+ L VSMST HSWM  LG +YER TKSFYTD HEK +VVEYR +YI
Sbjct:  267 YAPSTILRWLRDFRKEGGFRRDARGAHEPDWIMSEEDLKSALLAWMISQPRFTIKEVCKYINGPLLQDDKEEDLSRLHAYQVNLPVSMSTMHSWMIRLGCRYERGTKSFYTDTHEKKEVVEYRGEYI 393          
BLAST of mRNA_H-elongata_contig55146.12921.1 vs. uniprot
Match: A0A6H5K2T4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K2T4_9PHAE)

HSP 1 Score: 140 bits (352), Expect = 5.390e-36
Identity = 71/129 (55.04%), Postives = 85/129 (65.89%), Query Frame = 1
Query:    1 YAASTILKWAREYRALGDFKRDLRGLHERDWILSEADLQQDIIGWLKTQKCVTVKDTRDYINGTLFKSETGDLARLLSTYQLTLSVSMSTTHSWMKALGYKYERATKSFYTDGHEKPDVVEYRRDYINI 387
            YAASTIL W R++R  G FKRD RG+HERDWI+SE DL+ ++I W++TQK +T KD                         + L VSM+TTHSWM ALG KYERATKSFYTDGHEK DVV YR  YI++
Sbjct:  397 YAASTILGWLRDFRGHGGFKRDSRGVHERDWIMSEEDLKDELIKWMRTQKRLTAKD-------------------------VNLPVSMATTHSWMIALGCKYERATKSFYTDGHEKKDVVVYRGKYIDV 500          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig55146.12921.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5J4M4_9PHAE3.690e-4967.44Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A6H5JMT5_9PHAE1.140e-4865.89Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JRV8_9PHAE1.460e-4865.89Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K7P7_9PHAE3.070e-4865.89Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JVN6_9PHAE1.900e-4769.11Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JI16_9PHAE5.580e-4763.57Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KP29_9PHAE3.370e-4363.56Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L611_9PHAE3.820e-4058.27Uncharacterized protein n=8 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JMQ7_9PHAE4.870e-3753.54Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A6H5K2T4_9PHAE5.390e-3655.04Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig55146contigH-elongata_contig55146:3184..3570 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeFungi
Seed ortholog score69.3
Seed ortholog evalue1.5e-09
Seed eggNOG ortholog588596.U9U9U7
EggNOG OGs29JY0@1,2RT6R@2759,39VBJ@33154,3P12S@4751
Best tax levelFungi
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons1
Model size387
Cds size387
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930899.0169759-CDS-H-elongata_contig55146:3183..35701622930899.0169759-CDS-H-elongata_contig55146:3183..3570Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig55146 3184..3570 -
1691679616.815671-CDS-H-elongata_contig55146:3183..35701691679616.815671-CDS-H-elongata_contig55146:3183..3570Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig55146 3184..3570 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig55146.12921.1prot_H-elongata_contig55146.12921.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig55146 3184..3570 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig55146.12921.1

>prot_H-elongata_contig55146.12921.1 ID=prot_H-elongata_contig55146.12921.1|Name=mRNA_H-elongata_contig55146.12921.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=129bp
YAASTILKWAREYRALGDFKRDLRGLHERDWILSEADLQQDIIGWLKTQK
CVTVKDTRDYINGTLFKSETGDLARLLSTYQLTLSVSMSTTHSWMKALGY
KYERATKSFYTDGHEKPDVVEYRRDYINI
back to top

mRNA from alignment at H-elongata_contig55146:3184..3570-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig55146.12921.1 ID=mRNA_H-elongata_contig55146.12921.1|Name=mRNA_H-elongata_contig55146.12921.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=387bp|location=Sequence derived from alignment at H-elongata_contig55146:3184..3570- (Himanthalia elongata Himel1 dioecious)
TACGCGGCATCGACGATCCTGAAGTGGGCGAGGGAATATCGGGCGCTGGG CGATTTCAAGCGAGATTTAAGGGGATTGCACGAGAGGGACTGGATCTTGT CGGAAGCGGATCTGCAGCAAGACATCATCGGGTGGTTGAAAACGCAGAAG TGTGTTACCGTCAAGGACACCCGCGACTACATCAACGGCACTTTGTTCAA AAGCGAAACCGGTGATCTGGCCAGACTCCTTTCGACGTACCAACTGACTC TTTCCGTGTCCATGTCCACGACCCACTCATGGATGAAAGCATTGGGGTAC AAGTACGAGCGGGCCACAAAATCGTTCTACACTGACGGCCACGAGAAGCC GGACGTGGTTGAGTACCGACGCGACTACATCAACATC
back to top

Coding sequence (CDS) from alignment at H-elongata_contig55146:3184..3570-

>mRNA_H-elongata_contig55146.12921.1 ID=mRNA_H-elongata_contig55146.12921.1|Name=mRNA_H-elongata_contig55146.12921.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=774bp|location=Sequence derived from alignment at H-elongata_contig55146:3184..3570- (Himanthalia elongata Himel1 dioecious)
TACGCGGCATCGACGATCCTGAAGTGGGCGAGGGAATATCGGGCGCTGGG
CGATTTCAAGCGAGATTTAAGGGGATTGCACGAGAGGGACTGGATCTTGT
CGGAAGCGGATCTGCAGCAAGACATCATCGGGTGGTTGAAAACGCAGAAG
TGTGTTACCGTCAAGGACACCCGCGACTACATCAACGGCACTTTGTTCAA
AAGCGAAACCGGTGATCTGGCCAGACTCCTTTCGACGTACCAACTGACTC
TTTCCGTGTCCATGTCCACGACCCACTCATGGATGAAAGCATTGGGGTAC
AAGTACGAGCGGGCCACAAAATCGTTCTACACTGACGGCCACGAGAAGCC
GGACGTGGTTGAGTACCGACGCGACTACATCAACATCTACGCGGCATCGA
CGATCCTGAAGTGGGCGAGGGAATATCGGGCGCTGGGCGATTTCAAGCGA
GATTTAAGGGGATTGCACGAGAGGGACTGGATCTTGTCGGAAGCGGATCT
GCAGCAAGACATCATCGGGTGGTTGAAAACGCAGAAGTGTGTTACCGTCA
AGGACACCCGCGACTACATCAACGGCACTTTGTTCAAAAGCGAAACCGGT
GATCTGGCCAGACTCCTTTCGACGTACCAACTGACTCTTTCCGTGTCCAT
GTCCACGACCCACTCATGGATGAAAGCATTGGGGTACAAGTACGAGCGGG
CCACAAAATCGTTCTACACTGACGGCCACGAGAAGCCGGACGTGGTTGAG
TACCGACGCGACTACATCAACATC
back to top