mRNA_H-elongata_contig55134.12920.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig55134.12920.1
Unique NamemRNA_H-elongata_contig55134.12920.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig55134.12920.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig55134contigH-elongata_contig55134:854..2519 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons4
Model size280
Cds size279
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig55134.12920.1prot_H-elongata_contig55134.12920.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig55134 854..2519 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930898.8345253-CDS-H-elongata_contig55134:853..9101622930898.8345253-CDS-H-elongata_contig55134:853..910Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig55134 854..910 -
1691679616.7720685-CDS-H-elongata_contig55134:853..9101691679616.7720685-CDS-H-elongata_contig55134:853..910Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig55134 854..910 -
1622930898.8791196-CDS-H-elongata_contig55134:1163..12491622930898.8791196-CDS-H-elongata_contig55134:1163..1249Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig55134 1164..1249 -
1691679616.7879791-CDS-H-elongata_contig55134:1163..12491691679616.7879791-CDS-H-elongata_contig55134:1163..1249Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig55134 1164..1249 -
1622930898.9422576-CDS-H-elongata_contig55134:1451..15271622930898.9422576-CDS-H-elongata_contig55134:1451..1527Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig55134 1452..1527 -
1691679616.7996337-CDS-H-elongata_contig55134:1451..15271691679616.7996337-CDS-H-elongata_contig55134:1451..1527Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig55134 1452..1527 -
1622930898.9640484-CDS-H-elongata_contig55134:2459..25191622930898.9640484-CDS-H-elongata_contig55134:2459..2519Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig55134 2460..2519 -
1691679616.8071532-CDS-H-elongata_contig55134:2459..25191691679616.8071532-CDS-H-elongata_contig55134:2459..2519Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig55134 2460..2519 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig55134.12920.1

>prot_H-elongata_contig55134.12920.1 ID=prot_H-elongata_contig55134.12920.1|Name=mRNA_H-elongata_contig55134.12920.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=93bp
MLSGAVLEGFNKLFRGDNDADAKTKIQLRKDRNFAMQAQLQLVDIGGASL
LMIAASTASVAVFNAVAHEVRPSQARKILFLQDVRGITYLMYA
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mRNA from alignment at H-elongata_contig55134:854..2519-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig55134.12920.1 ID=mRNA_H-elongata_contig55134.12920.1|Name=mRNA_H-elongata_contig55134.12920.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1666bp|location=Sequence derived from alignment at H-elongata_contig55134:854..2519- (Himanthalia elongata Himel1 dioecious)
ATGCTTTCAGGTGCTGTGCTCGAGGGCTTCAACAAACTATTTCGAGGGGA
TAACGACGCAGTAAGTTGCTTACCTGCTACTCGTCTACTTACTACATCAT
CATCAGTCGGGAGGGGGTAAACACCTCGATTTTAATCAGCACTTGAGTCG
TCGTTGGGCACGCTGAATAGTTCTCGTGGCTGGGTCGCACGGTTGTTCCT
GCTTAAACAGATCGGTATGACTTCCAGTAGCTTTTAGAATATGTCCCACT
AAGGCGCCATACTGTTCCGAAGATAATATCAATCGGGTGTGGCAATATCG
CTTCGGTGACCATATCGATTTGTCCACATAATCGAGCTACAAGCACAGCC
CCTCCCTTTCCCCTCCTTCACATACACTGCAATAAAAATGGTTTACAGCA
GCCTAGTTCAGCGAATCAAAAGCGGGGTTGGGAGATGGCCCAATCAGCAT
ATATATAATATCCGATACTGTCTGTGACTGTATCGCACATGCCCACCCTA
CCAATAGTGAGCGTGGGAAAAGAGAGGCGTACAATAATTGGTCCATGGGG
CTACCTGAATAGGTTTGCACCCGTTACTTGAGCTACCGTGAGGACTGCTA
GCTCAGTACCGGTGGAATCTCGGTGGTAAACGCCATCCGGAATTGGCCCG
ATGGCGGTTGACGGTAGAGATGGACGCCGTCACGGAGAACGAGAGGATCT
AGAGGATCGCAGGAAAGGACTGCCGAACCCGTCTCGCGAGACCAAATTTT
CAGCCGCGAACGCGGACAGGAGAAAATTATTTTTTCCTGCTGAGCTGGCC
ACAAGCAGGAGGCAACCAAATCCGGTTGATCTTACTCTGTTATATGTGAT
GACCACGCAAATTAATCACAAGACCTATTGGTGGTGGGATCGGTAGCCCT
TAGACAAAGTCATGGTACTCGAGCCCCAAACGATTATTCTGTTTATTCAA
TGCCCAAGGCACGCTTTGACTTCATATCTCTGGTGAAAGCAGGATGCGAA
AACCAAGATTCAGCTGCGAAAGGACAGGAACTTCGCGATGCAAGCGCAGC
TGCAGCTCGTAGACATTGGTCAGTTAGATTTTTTACTTGCTTCTCGTATT
TTTTATTATTATTCTACTCCTTGAGCTGATATTATGTCTACGTCAACGTC
AATGCCAACGGTGGGTTGTGCTAATCAGTTCTCTTCTAGAGTTGTGACTG
AGCCGCACTCACGAACCATAGTCCTCCGCAAGGTGACATGCCTTCGTATC
TTCGGTTTGGCAATAAGCAGGAGGGGCGAGCCTCTTAATGATCGCTGCTT
CTACAGCCAGTGTCGCCGTCTTCAATGCTGTCGCTCACGAAGTCCGACCC
TCACAGGTGAATGCACAAACAATAAACGGTGCAGTCAGTCGCGATGCACC
GAATCATGATTGGCTGTTTACGGTAATGCGCTGCAGTTACTCTGAAGCAA
TGGTCCAAACTTCTTAAGCTACTTAGAGGGGTGCCTTTAAAAACTTAAAA
ATGCCTCGCACATGTACATCTTGGACACTTGACGCCTCCCACGAGATGTG
AATAGGATCAACTCTTGCGGGGTCTAAACCTCTTGAAGCCATTTGCGTTT
ATCCACCAGGCGAGGAAGATACTCTTCCTTCAAGATGTTCGAGGAATTAC
TTACCTCATGTACGCC
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Coding sequence (CDS) from alignment at H-elongata_contig55134:854..2519-

>mRNA_H-elongata_contig55134.12920.1 ID=mRNA_H-elongata_contig55134.12920.1|Name=mRNA_H-elongata_contig55134.12920.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=558bp|location=Sequence derived from alignment at H-elongata_contig55134:854..2519- (Himanthalia elongata Himel1 dioecious)
ATGCTTTCAGGTGCTGTGCTCGAGGGCTTCAACAAACTATTTCGAGGGGA
TAACGACGCAATGCTTTCAGGTGCTGTGCTCGAGGGCTTCAACAAACTAT
TTCGAGGGGATAACGACGCAGATGCGAAAACCAAGATTCAGCTGCGAAAG
GACAGGAACTTCGCGATGCAAGCGCAGCTGCAGCTCGTAGACATTGGATG
CGAAAACCAAGATTCAGCTGCGAAAGGACAGGAACTTCGCGATGCAAGCG
CAGCTGCAGCTCGTAGACATTGGAGGGGCGAGCCTCTTAATGATCGCTGC
TTCTACAGCCAGTGTCGCCGTCTTCAATGCTGTCGCTCACGAAGTCCGAC
CCTCACAGGAGGGGCGAGCCTCTTAATGATCGCTGCTTCTACAGCCAGTG
TCGCCGTCTTCAATGCTGTCGCTCACGAAGTCCGACCCTCACAGGCGAGG
AAGATACTCTTCCTTCAAGATGTTCGAGGAATTACTTACCTCATGTACGC
CGCGAGGAAGATACTCTTCCTTCAAGATGTTCGAGGAATTACTTACCTCA
TGTACGCC
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