mRNA_H-elongata_contig55129.12919.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig55129.12919.1
Unique NamemRNA_H-elongata_contig55129.12919.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig55129.12919.1 vs. uniprot
Match: D7FMP2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FMP2_ECTSI)

HSP 1 Score: 89.7 bits (221), Expect = 6.560e-19
Identity = 52/117 (44.44%), Postives = 64/117 (54.70%), Query Frame = 1
Query:    1 FVIPEGGELPLHDHPHMTVLSKILFGSLHVDSYDLERASRHAGEEEARALSPSRSEVTRVCSTLEGEGQRYNAVSSPSRVMG----AATSSFLLTPAEGNVHAFKASATCAVFDILV 339
            FV+P+GGE+PLHDHP+M VLS+ILFG+L V SYD+E                              E QR           G    AAT SFLLTP+EGNVH+F+A   CAVFD+L+
Sbjct:  154 FVLPKGGEIPLHDHPNMAVLSRILFGTLDVTSYDMEEXXXXXXXXXXXXXXXXXXXTFADAELRRKEAQRVVFAXXXXXXEGGRVTAATPSFLLTPSEGNVHSFRAPTACAVFDVLI 270          
BLAST of mRNA_H-elongata_contig55129.12919.1 vs. uniprot
Match: A0A7S0LJF8_9EUKA (Hypothetical protein n=1 Tax=Coccolithus braarudii TaxID=221442 RepID=A0A7S0LJF8_9EUKA)

HSP 1 Score: 80.5 bits (197), Expect = 5.500e-16
Identity = 45/113 (39.82%), Postives = 62/113 (54.87%), Query Frame = 1
Query:    1 FVIPEGGELPLHDHPHMTVLSKILFGSLHVDSYDLERASRHAGEEEARALSPSRSEVTRVCSTLEGEGQRYNAVSSPSRVMGAATSSFLLTPAEGNVHAFKASATCAVFDILV 339
            FV+P G  +PLHDHPHMTVLSK++FG+LHV SYDL  A+          L P + +    C+  +              V+ A  ++  L P  GN+HAF+A    AVFD+L+
Sbjct:  106 FVLPAGSSIPLHDHPHMTVLSKLIFGALHVTSYDLPEAASEPRPALFGGLRPRQRQRRLRCAPAQRT------------VVAAPAATLKLDPVHGNLHAFRALNDTAVFDVLL 206          
BLAST of mRNA_H-elongata_contig55129.12919.1 vs. uniprot
Match: A0A7S0IPW3_9EUKA (Hypothetical protein n=1 Tax=Calcidiscus leptoporus TaxID=127549 RepID=A0A7S0IPW3_9EUKA)

HSP 1 Score: 79.7 bits (195), Expect = 1.140e-15
Identity = 49/115 (42.61%), Postives = 69/115 (60.00%), Query Frame = 1
Query:    1 FVIPEGGELPLHDHPHMTVLSKILFGSLHVDSYDLERASRHAGEEEARALSPSRSEVTRVCSTLEGEGQRYNAVSSPSR--VMGAATSSFLLTPAEGNVHAFKASATCAVFDILV 339
            F++P G  +PLHDHPHMTVLSK+LFG LHV SYD+  A      EEA  +SP  +    + S L    + ++   +P+R  V+ A + +  L    GN+HAF+A    AVFD+L+
Sbjct:  107 FMLPAGTSIPLHDHPHMTVLSKLLFGKLHVTSYDMPAA------EEAGEVSPRPA----LFSALRSRRRHHSLRCAPARRRVVEAPSPTLRLDAIRGNLHAFQALNDTAVFDVLL 211          
BLAST of mRNA_H-elongata_contig55129.12919.1 vs. uniprot
Match: A0A835J031_9MAGN (Cysteine dioxygenase n=1 Tax=Coptis chinensis TaxID=261450 RepID=A0A835J031_9MAGN)

HSP 1 Score: 75.1 bits (183), Expect = 1.670e-13
Identity = 44/113 (38.94%), Postives = 61/113 (53.98%), Query Frame = 1
Query:    1 FVIPEGGELPLHDHPHMTVLSKILFGSLHVDSYDLER-ASRHAGEEEARALSPSRSEVTRVCSTLEGEGQRYNAVSSPSRVMGAATSSFLLTPAEGNVHAFKASATCAVFDIL 336
            F +P  G +PLH+HP MTV SK+LFGS+H+ SYD E  A  H+ E    +  PS          ++ +G R   V++ S       +S L   A GN+H F A  +CAV D+L
Sbjct:  285 FCLPPSGVIPLHNHPGMTVFSKLLFGSMHIKSYDWETDAPHHSKENTNHSQLPS----------VQPQGTRLAKVNTDSVFTAPCNTSILYPAAGGNMHCFTALTSCAVLDVL 387          
BLAST of mRNA_H-elongata_contig55129.12919.1 vs. uniprot
Match: UPI0018FF8DB7 (plant cysteine oxidase 4-like n=1 Tax=Benincasa hispida TaxID=102211 RepID=UPI0018FF8DB7)

HSP 1 Score: 70.1 bits (170), Expect = 3.350e-12
Identity = 41/113 (36.28%), Postives = 62/113 (54.87%), Query Frame = 1
Query:    1 FVIPEGGELPLHDHPHMTVLSKILFGSLHVDSYDLERASRHAGEEEARALSPSRSEVTRVCSTLEGEGQRYNAVSSPSRVMGAATSSFLLTPAEG-NVHAFKASATCAVFDIL 336
            F +PEGGELPLHDHP MTV+SK+L+GS+HV +YD  +                  +++       G G++        +V  A + +  L PA G N+H+F+A + CA+ D+L
Sbjct:   86 FCLPEGGELPLHDHPGMTVMSKLLYGSVHVKAYDWIKM-----------------QISSSTDRTFGLGKKV-----VDKVWSAPSEARALFPASGGNIHSFRAKSGCAILDVL 176          
BLAST of mRNA_H-elongata_contig55129.12919.1 vs. uniprot
Match: UPI001C4EF2C3 (plant cysteine oxidase 2-like n=1 Tax=Macadamia integrifolia TaxID=60698 RepID=UPI001C4EF2C3)

HSP 1 Score: 68.9 bits (167), Expect = 1.430e-11
Identity = 42/112 (37.50%), Postives = 58/112 (51.79%), Query Frame = 1
Query:    1 FVIPEGGELPLHDHPHMTVLSKILFGSLHVDSYDLERASRHAGEEEARALSPSRSEVTRVCSTLEGEGQRYNAVSSPSRVMGAATSSFLLTPAEGNVHAFKASATCAVFDIL 336
            F +P+ G +PLH+HP MTV SK+LFGS+H+ SYD      H   E     +PS  + + V       G R   + + S       +S L   A GN+H F A  +CAV D+L
Sbjct:  117 FCLPQSGVIPLHNHPGMTVFSKLLFGSMHIKSYDWATDVSHNTNEN---FNPSHYQSSYV-------GNRLVKIKNDSVFTVPCNTSILYPAAGGNMHCFTAVTSCAVLDVL 218          
BLAST of mRNA_H-elongata_contig55129.12919.1 vs. uniprot
Match: E0CRP0_VITVI (Cysteine dioxygenase n=3 Tax=Vitis TaxID=3603 RepID=E0CRP0_VITVI)

HSP 1 Score: 67.8 bits (164), Expect = 2.520e-11
Identity = 40/112 (35.71%), Postives = 56/112 (50.00%), Query Frame = 1
Query:    1 FVIPEGGELPLHDHPHMTVLSKILFGSLHVDSYDLERASRHAGEEEARALSPSRSEVTRVCSTLEGEGQRYNAVSSPSRVMGAATSSFLLTPAEGNVHAFKASATCAVFDIL 336
            F  P GG  PLHDHP+MTVLSK+L+GS+HV +YD  +A   +                  C T+   G   N++ +  R       S L   + GN+H+F A   CA+ D+L
Sbjct:   93 FCFPAGGTFPLHDHPNMTVLSKLLYGSVHVKAYDWVKAENSS------------------CRTIGLAGIVTNSIFNAPR-----EPSILFPRSGGNIHSFTALTPCAILDVL 181          
BLAST of mRNA_H-elongata_contig55129.12919.1 vs. uniprot
Match: UPI001CC333B0 (plant cysteine oxidase 2 n=1 Tax=Telopea speciosissima TaxID=54955 RepID=UPI001CC333B0)

HSP 1 Score: 68.2 bits (165), Expect = 2.720e-11
Identity = 44/112 (39.29%), Postives = 60/112 (53.57%), Query Frame = 1
Query:    1 FVIPEGGELPLHDHPHMTVLSKILFGSLHVDSYDLERASRHAGEEEARALSPSRSEVTRVCSTLEGEGQRYNAVSSPSRVMGAATSSFLLTPAEGNVHAFKASATCAVFDIL 336
            F +P+ G +PLH+HP MTV SK+LFGS+H+ SYD      H   E    L+PS  +    CS+    G R   + + S       +S L   A GN+H F A  +CAV D+L
Sbjct:  117 FCLPKSGVIPLHNHPGMTVFSKLLFGSMHIKSYDWVTDVSHNTSEN---LNPSHFQ----CSS----GIRLVKIKNDSIFTVPCNTSILYPAAGGNMHCFTAVTSCAVLDVL 217          
BLAST of mRNA_H-elongata_contig55129.12919.1 vs. uniprot
Match: A0A446KF92_TRITD (Cysteine dioxygenase n=1 Tax=Triticum turgidum subsp. durum TaxID=4567 RepID=A0A446KF92_TRITD)

HSP 1 Score: 66.2 bits (160), Expect = 2.750e-11
Identity = 41/112 (36.61%), Postives = 60/112 (53.57%), Query Frame = 1
Query:    1 FVIPEGGELPLHDHPHMTVLSKILFGSLHVDSYDLERASRHAGEEEARALSPSRSEVTRVCSTLEGEGQRYNAVSSPSRVMGAATSSFLLTPAEGNVHAFKASATCAVFDIL 336
            F +P+   +PLH+HP MTV SK+LFGS+H+ SYD  R+   AG     AL+ S             +G R   +++ + V G+A +  L     GN+H F A   CAV D++
Sbjct:   31 FCLPKHAVIPLHNHPGMTVFSKMLFGSMHLKSYDWARSISEAG---TTALTTS-------------DGARLAKINTNNVVDGSAETIVLYPENGGNLHCFTALTPCAVLDVM 126          
BLAST of mRNA_H-elongata_contig55129.12919.1 vs. uniprot
Match: M7Z4A7_TRIUA (Cysteine dioxygenase n=4 Tax=Triticum TaxID=4564 RepID=M7Z4A7_TRIUA)

HSP 1 Score: 67.4 bits (163), Expect = 2.910e-11
Identity = 39/112 (34.82%), Postives = 58/112 (51.79%), Query Frame = 1
Query:    1 FVIPEGGELPLHDHPHMTVLSKILFGSLHVDSYDLERASRHAGEEEARALSPSRSEVTRVCSTLEGEGQRYNAVSSPSRVMGAATSSFLLTPAEGNVHAFKASATCAVFDIL 336
            F +P+   +PLH+HP MTV SK+LFGS+H+ SYD  RA+  AG   A                +  +G R   +++ + V  +A +  L     GN+H F A   CAV D++
Sbjct:   77 FCLPKHAVIPLHNHPGMTVFSKMLFGSMHLKSYDWARANSEAGPNNA---------------LITSDGARLAKINTNAVVDASAETIVLYPENGGNLHCFTALTPCAVLDVM 173          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig55129.12919.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FMP2_ECTSI6.560e-1944.44Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A7S0LJF8_9EUKA5.500e-1639.82Hypothetical protein n=1 Tax=Coccolithus braarudii... [more]
A0A7S0IPW3_9EUKA1.140e-1542.61Hypothetical protein n=1 Tax=Calcidiscus leptoporu... [more]
A0A835J031_9MAGN1.670e-1338.94Cysteine dioxygenase n=1 Tax=Coptis chinensis TaxI... [more]
UPI0018FF8DB73.350e-1236.28plant cysteine oxidase 4-like n=1 Tax=Benincasa hi... [more]
UPI001C4EF2C31.430e-1137.50plant cysteine oxidase 2-like n=1 Tax=Macadamia in... [more]
E0CRP0_VITVI2.520e-1135.71Cysteine dioxygenase n=3 Tax=Vitis TaxID=3603 RepI... [more]
UPI001CC333B02.720e-1139.29plant cysteine oxidase 2 n=1 Tax=Telopea speciosis... [more]
A0A446KF92_TRITD2.750e-1136.61Cysteine dioxygenase n=1 Tax=Triticum turgidum sub... [more]
M7Z4A7_TRIUA2.910e-1134.82Cysteine dioxygenase n=4 Tax=Triticum TaxID=4564 R... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig55129contigH-elongata_contig55129:256..1347 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score95.1
Seed ortholog evalue2.2e-17
Seed eggNOG ortholog2880.D7FMP2
KEGG rclassRC00114,RC00404
KEGG koko:K00030,ko:K10610,ko:K10712
KEGG ReactionR00709,R02467
KEGG Pathwayko00020,ko00430,ko01100,ko01110,ko01120,ko01130,ko01200,ko01210,ko01230,ko03420,ko04120,ko05161,ko05203,map00020,map00430,map01100,map01110,map01120,map01130,map01200,map01210,map01230,map03420,map04120,map05161,map05203
KEGG ModuleM00009,M00010,M00385,M00386
GOsGO:0001666,GO:0003032,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005739,GO:0005829,GO:0006091,GO:0006464,GO:0006807,GO:0006950,GO:0008150,GO:0008152,GO:0009061,GO:0009593,GO:0009628,GO:0009987,GO:0015980,GO:0018158,GO:0018171,GO:0018193,GO:0018198,GO:0019538,GO:0036211,GO:0036293,GO:0042221,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043412,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044424,GO:0044444,GO:0044464,GO:0045333,GO:0050896,GO:0051606,GO:0055114,GO:0070482,GO:0070483,GO:0071704,GO:1901564
EggNOG free text desc.cysteamine dioxygenase activity
EggNOG OGsKOG4281@1,KOG4281@2759
EC1.1.1.41,1.13.11.19
COG Functional cat.CE
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEbr01601,ko00000,ko00001,ko00002,ko01000,ko03400,ko04121
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionADO/CDO cysteamine dioxygenase
Ec32 orthologEc-23_001060.1
Exons2
Model size339
Cds size339
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930898.7128978-CDS-H-elongata_contig55129:255..5451622930898.7128978-CDS-H-elongata_contig55129:255..545Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig55129 256..545 -
1691679616.736109-CDS-H-elongata_contig55129:255..5451691679616.736109-CDS-H-elongata_contig55129:255..545Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig55129 256..545 -
1622930898.7935581-CDS-H-elongata_contig55129:1298..13471622930898.7935581-CDS-H-elongata_contig55129:1298..1347Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig55129 1299..1347 -
1691679616.756697-CDS-H-elongata_contig55129:1298..13471691679616.756697-CDS-H-elongata_contig55129:1298..1347Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig55129 1299..1347 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig55129.12919.1prot_H-elongata_contig55129.12919.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig55129 256..1347 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig55129.12919.1

>prot_H-elongata_contig55129.12919.1 ID=prot_H-elongata_contig55129.12919.1|Name=mRNA_H-elongata_contig55129.12919.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=113bp
FVIPEGGELPLHDHPHMTVLSKILFGSLHVDSYDLERASRHAGEEEARAL
SPSRSEVTRVCSTLEGEGQRYNAVSSPSRVMGAATSSFLLTPAEGNVHAF
KASATCAVFDILV
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mRNA from alignment at H-elongata_contig55129:256..1347-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig55129.12919.1 ID=mRNA_H-elongata_contig55129.12919.1|Name=mRNA_H-elongata_contig55129.12919.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1092bp|location=Sequence derived from alignment at H-elongata_contig55129:256..1347- (Himanthalia elongata Himel1 dioecious)
TTCGTCATCCCCGAGGGGGGAGAGCTTCCCCTACACGACCACCCTCACAG TAAGTTCTTGTTCTTTGCTTCCTCCGCTCCCCTCCAATTTGTGCCCGCCG CCGCCCGACCGTTTAGTGGAAATTATAGAACCATCTGCGGCGCGCGCAAG GTTTGATGGTGGTACCGATTTTACGCGAGCGTCCGCTACGAGTGCGAGTC GACCTGATATGTAATTACTCACCCTCTAAAGCATATTTAAAGCCTACTGA TCCGTGGCATTCTGGGAGATGGTTAGACGTGTCTTCGACTGAGACGAGAT CAAGGATGAAGTCGACCTCCTGAAGTCCCCAAAGCCCGAACCTTGACTGC GTGTCCGAAGAGGCAAGAGCCCCCCCCATCCACCCTCTTCCCCAAACCGA ACCGTCGTTCCTTCGTCCGTGGCGCCAATGACGGGGTTCTGCAAGATGAG CGCGAGAAGGGCGGACAAGACCCGCCCTGCGCAGTCCGGCAGTCTGACGC CACGCGCGAAGATTCCAAAGACACCTCTCGACACACTTGACTGGCTGGCT GGCGCGCAATGCGCCATAACTTTGTCGCCCCGTCGTAGGCGAAAAAAAGA TCACATGCTCTAACGCGTTACAGACCCATGTTTGACACAGTGCAAATTTT TACAGCTCACAGTTTTGAAAGGTAAATGGCGGCGTTTAAATTTGACCCCC CATCATCACCCCCTCCCCCTCTCTTTCTTGGCGCCCCGTTTTCCCTCCTC CTCCCTGTGTTGAACTCGTCAATTCACCCGGGCCGGCCACGGATGAGAGT AGTGACGGTCCTGTCAAAAATCTTGTTCGGCAGCCTGCACGTTGATTCCT ACGACTTGGAGCGAGCCTCTCGTCACGCGGGCGAAGAGGAGGCGAGGGCC CTGTCTCCGTCGAGGTCGGAGGTAACTCGCGTGTGTAGTACCCTGGAGGG CGAAGGGCAGAGATATAATGCTGTGTCGAGTCCTTCCCGCGTGATGGGCG CCGCAACCTCGTCTTTCTTGCTCACGCCAGCGGAGGGCAACGTGCACGCG TTCAAGGCGTCTGCAACGTGTGCGGTTTTCGATATTTTGGTG
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Coding sequence (CDS) from alignment at H-elongata_contig55129:256..1347-

>mRNA_H-elongata_contig55129.12919.1 ID=mRNA_H-elongata_contig55129.12919.1|Name=mRNA_H-elongata_contig55129.12919.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=678bp|location=Sequence derived from alignment at H-elongata_contig55129:256..1347- (Himanthalia elongata Himel1 dioecious)
TTCGTCATCCCCGAGGGGGGAGAGCTTCCCCTACACGACCACCCTCACAT
TCGTCATCCCCGAGGGGGGAGAGCTTCCCCTACACGACCACCCTCACATG
ACGGTCCTGTCAAAAATCTTGTTCGGCAGCCTGCACGTTGATTCCTACGA
CTTGGAGCGAGCCTCTCGTCACGCGGGCGAAGAGGAGGCGAGGGCCCTGT
CTCCGTCGAGGTCGGAGGTAACTCGCGTGTGTAGTACCCTGGAGGGCGAA
GGGCAGAGATATAATGCTGTGTCGAGTCCTTCCCGCGTGATGGGCGCCGC
AACCTCGTCTTTCTTGCTCACGCCAGCGGAGGGCAACGTGCACGCGTTCA
AGGCGTCTGCAACGTGTGCGGTTTTCGATATTTTGGTGTGACGGTCCTGT
CAAAAATCTTGTTCGGCAGCCTGCACGTTGATTCCTACGACTTGGAGCGA
GCCTCTCGTCACGCGGGCGAAGAGGAGGCGAGGGCCCTGTCTCCGTCGAG
GTCGGAGGTAACTCGCGTGTGTAGTACCCTGGAGGGCGAAGGGCAGAGAT
ATAATGCTGTGTCGAGTCCTTCCCGCGTGATGGGCGCCGCAACCTCGTCT
TTCTTGCTCACGCCAGCGGAGGGCAACGTGCACGCGTTCAAGGCGTCTGC
AACGTGTGCGGTTTTCGATATTTTGGTG
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