mRNA_H-elongata_contig5512.12918.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig5512.12918.1 vs. uniprot
Match: A0A6H5KYH1_9PHAE (Protein kinase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KYH1_9PHAE) HSP 1 Score: 166 bits (419), Expect = 1.120e-43 Identity = 111/288 (38.54%), Postives = 129/288 (44.79%), Query Frame = 1
Query: 1 RDFMSPLCLACAGGHEDTAIFLLTRADADPNNVAGAVAAVAAVAGGLFETNTRGEFTDESSVRAA----PSPPLLLAVEAGLVRAVRELVVRGARVDTSRAEDGWNALHVCASLGNAPIM----------------------------------------------------------------------------RGHHRQAEERTWAGRTPLHRAALGGHTEIVLRLLVYGVSVDPIDKDGMTPLMLAAREGHWSTARALIWEGEASVTAVADEGDTALHVAAAAG 624
R F+SPLCLAC GGHE+ A+ LL RA+ADPNN GA A + T + T S V A P PL LAV GL R V EL+ RGARVDT R EDGW ALH+CA+ G+A +M RG R AE++TWAGRTPLHRAA GHTE+VLRLL +GV+VDP D EG+ASV A DEGDT LH AA +G
Sbjct: 70 RSFLSPLCLACRGGHEEAALLLLHRANADPNNATGA-------AEQRYGQTTYDDLTGGSGVGGAGGAPPPTPLALAVVTGLQRVVEELLARGARVDTPRPEDGWTALHLCAARGDALMMEVLLRAPLADAGARTSQLETPLSVASSRGHLSVVDMLLGGDXXXXXXXXXTGGEPAGKPTASDPPSVSAATGATGNRGARRHAEDKTWAGRTPLHRAASAGHTEVVLRLLAHGVAVDPTDSRRAXXXXXXXXXXXXXXXXXXXXEGKASVAAATDEGDTVLHAAAGSG 350
BLAST of mRNA_H-elongata_contig5512.12918.1 vs. uniprot
Match: W5M8C1_LEPOC (Transient receptor potential cation channel subfamily A member 1 n=4 Tax=Lepisosteus oculatus TaxID=7918 RepID=W5M8C1_LEPOC) HSP 1 Score: 73.9 bits (180), Expect = 9.200e-12 Identity = 68/218 (31.19%), Postives = 102/218 (46.79%), Query Frame = 1
Query: 13 SPLCLACA-GGHEDTAIFLLTRADADPNNVAGAVAAVAAVAGGLFETNT----RGE------FTDESSVRAAPSPPLLLAVEAGLVRAVRELVVRGARVDTSRAEDGWNALHVCASLGNAP---IMRGHHRQAEERT----WAGRTPLHRAALGGHTEIVLRLLVYGVSVDPIDKDGMTPLMLAAREGHWSTARALIWEGEASVTAVADEGDTALHVA 612
+P LAC+ HE I L A N G A AA G ++ +GE FT + + + S PL LAV G + ++ + GA++D + D ALH + G +M H + EE A +TPLH+A++ H ++V LL+ G ++ ID G TPL+LA R G W T L+ +G A+V +G +H+A
Sbjct: 193 TPSMLACSIDNHEALGILLKHGAKLCRQNKLGHFAVHAAAFAGAKKSMEIILKKGEEMGHSVFTHINYLDKSSSSPLHLAVHGGNIEVIKLCIDNGAKIDLQQC-DKSTALHFACTQGATEAVKLMLSSHDRVEEVVNIIDGAHQTPLHKASIFDHVDLVEYLLLKGAKIESIDCKGHTPLLLATRCGAWRTVELLLNKG-ANVKIRDKQGCNFVHLA 408
BLAST of mRNA_H-elongata_contig5512.12918.1 vs. uniprot
Match: A0A210Q7N4_MIZYE (Transient receptor potential cation channel subfamily A member 1 n=3 Tax=Mizuhopecten yessoensis TaxID=6573 RepID=A0A210Q7N4_MIZYE) HSP 1 Score: 71.2 bits (173), Expect = 7.730e-11 Identity = 52/157 (33.12%), Postives = 72/157 (45.86%), Query Frame = 1
Query: 166 FTDESSVRAAPSPPLLLAVEAGLVRAVRELVVRGARVDTSRAEDGWNALHVCASLGNAPIMR--------GHHRQAEERTWAGRTPLHRAALGGHTEIVLRLLVYGVSVDPIDKDGMTPLMLAAREGHWSTARALIWEGEASVTAVADEGDTALHVA 612
FTD+++ + PL AV G + AVR + GA VD + ED LH + G+ +++ R TPLHRAAL H +V LL G +D D TPL++AA +G W T + LI E S+ E LH+A
Sbjct: 226 FTDKAN-----NMPLHAAVNGGDIEAVRVCIAAGAAVDAQQ-EDKSTPLHFACAQGSVELIKIMQELQPTRFSRALTSNDVLKMTPLHRAALFNHVNVVEYLLKQGAEIDAQDSQDRTPLLIAASKGCWKTVQCLI-ENNVSLAKTDRENRNFLHLA 375
BLAST of mRNA_H-elongata_contig5512.12918.1 vs. uniprot
Match: UPI001458B0F1 (transient receptor potential cation channel subfamily A member 1-like isoform X1 n=4 Tax=Pecten maximus TaxID=6579 RepID=UPI001458B0F1) HSP 1 Score: 66.6 bits (161), Expect = 2.960e-9 Identity = 46/136 (33.82%), Postives = 67/136 (49.26%), Query Frame = 1
Query: 166 FTDESSVRAAPSPPLLLAVEAGLVRAVRELVVRGARVDTSRAEDGWNALHVCASLGNAPIMR-GHHRQAEERTWAGRT-------PLHRAALGGHTEIVLRLLVYGVSVDPIDKDGMTPLMLAAREGHWSTARALI 549
FTD+++ + PL AV G + AVR + GA VD + ED LH + G+ +++ Q + + A RT PLHRA L H +V LL G +D D TPL++AA +G W T + L+
Sbjct: 266 FTDKAN-----NMPLHAAVNGGHIEAVRVCIAAGAAVDAQQ-EDKSTPLHFACAQGSVELIKIMQELQPDRFSTALRTCDVLKMTPLHRATLFNHVNVVEYLLKQGADIDAQDSQDRTPLLIAASKGCWRTVQCLM 395
BLAST of mRNA_H-elongata_contig5512.12918.1 vs. uniprot
Match: A0A8J4U2K0_CLAMG (Transient receptor potential cation channel subfamily A member 1-like n=1 Tax=Clarias magur TaxID=1594786 RepID=A0A8J4U2K0_CLAMG) HSP 1 Score: 65.9 bits (159), Expect = 3.330e-9 Identity = 51/151 (33.77%), Postives = 74/151 (49.01%), Query Frame = 1
Query: 184 VRAAPSPPLLLAVEAGLVRAVRELVVRGARVDTSRAEDGWNALHVCASLGNAPIMRGHHRQAEERTW--------AGRTPLHRAALGGHTEIVLRLLVYGVSVDPIDKDGMTPLMLAAREGHWSTARALIWEGEASVTAVADEGDTALHVA 612
V + S PL LAV G + ++ + GA++D + D ALH + G A ++ QA ER A +TPLH+AA+ H E+V L+ G +D ID G +PL+LA G W + L+ G A +T G LH+A
Sbjct: 24 VDKSTSSPLHLAVRGGNLEVIKLCIAHGAKIDQQQC-DKSTALHFACTQGAAEAVKVM-LQAYERVCDIINITDGAFQTPLHKAAIFDHYELVEYLISQGADIDFIDCKGHSPLLLATSCGAWRSVNLLLSHG-ADLTVKDKAGCNFLHLA 171
BLAST of mRNA_H-elongata_contig5512.12918.1 vs. uniprot
Match: A0A8J1UC15_OWEFU (Ofus.G11986 protein n=1 Tax=Owenia fusiformis TaxID=6347 RepID=A0A8J1UC15_OWEFU) HSP 1 Score: 65.9 bits (159), Expect = 5.470e-9 Identity = 48/146 (32.88%), Postives = 72/146 (49.32%), Query Frame = 1
Query: 142 FETNTRGEFTDESSVRAAPSPPLLLAVEAGLVRAVRELVVRGARVDTSRAEDGWNALHVCASLGNAPIMR----------GHHRQAEERTWAGRTPLHRAALGGHTEIVLRLLVYGVSVDPIDKDGMTPLMLAAREGHWSTARALI 549
+ N F D+S R PL AV G + AV+ + GA++D + +DG N +H+ S G+ +++ GH + ++ TPLH AAL + EI L+ G SV DK+G TPL+LAA + W T L+
Sbjct: 330 YRRNEMMSFMDKSRNR-----PLHSAVNGGDIEAVKICLNAGAQIDALQ-DDGSNPIHLACSQGSLEMIKVMFEKYPDSVGHVIRQKDVLMM--TPLHIAALVDNPEIATHLIENGASVHAKDKEGRTPLLLAASKCSWKTVDVLL 467
BLAST of mRNA_H-elongata_contig5512.12918.1 vs. uniprot
Match: A0A8C0YLI9_CYPCA (Transient receptor potential cation channel, subfamily A, member 1b n=1 Tax=Cyprinus carpio TaxID=7962 RepID=A0A8C0YLI9_CYPCA) HSP 1 Score: 64.7 bits (156), Expect = 1.290e-8 Identity = 42/142 (29.58%), Postives = 67/142 (47.18%), Query Frame = 1
Query: 142 FETNTRGEFTDESSVRAAPSPPLLLAVEAGLVRAVRELVVRGARVDTSRAEDGWNALHVCASLGNAPI--MRGHHRQAEE----RTWAGRTPLHRAALGGHTEIVLRLLVYGVSVDPIDKDGMTPLMLAAREGHWSTARALI 549
T+ + D+S S PL LAV G + ++ +++GARVD + + M + + E+ R A +TPLHRA L H E+V L+ +D ID +G++PL++A+R G W T L+
Sbjct: 149 LSTSVHINYLDKSK-----STPLHLAVRGGNIEVIKLCIIKGARVDQQQCDXXXXXXXXXXXXXXXXXXXMLSSYNKVEDIINIRDGANQTPLHRATLFDHVELVEYLISKEAEIDCIDCNGLSPLLMASRCGAWKTVAFLL 285
BLAST of mRNA_H-elongata_contig5512.12918.1 vs. uniprot
Match: A0A8C0YNK0_CYPCA (Transient receptor potential cation channel, subfamily A, member 1b n=2 Tax=Cyprinus carpio TaxID=7962 RepID=A0A8C0YNK0_CYPCA) HSP 1 Score: 64.7 bits (156), Expect = 1.300e-8 Identity = 42/142 (29.58%), Postives = 67/142 (47.18%), Query Frame = 1
Query: 142 FETNTRGEFTDESSVRAAPSPPLLLAVEAGLVRAVRELVVRGARVDTSRAEDGWNALHVCASLGNAPI--MRGHHRQAEE----RTWAGRTPLHRAALGGHTEIVLRLLVYGVSVDPIDKDGMTPLMLAAREGHWSTARALI 549
T+ + D+S S PL LAV G + ++ +++GARVD + + M + + E+ R A +TPLHRA L H E+V L+ +D ID +G++PL++A+R G W T L+
Sbjct: 223 LSTSVHINYLDKSK-----STPLHLAVRGGNIEVIKLCIIKGARVDQQQCDXXXXXXXXXXXXXXXXXXXMLSSYNKVEDIINIRDGANQTPLHRATLFDHVELVEYLISKEAEIDCIDCNGLSPLLMASRCGAWKTVAFLL 359
BLAST of mRNA_H-elongata_contig5512.12918.1 vs. uniprot
Match: A0A8C1IKI5_CYPCA (Transient receptor potential cation channel, subfamily A, member 1b n=1 Tax=Cyprinus carpio TaxID=7962 RepID=A0A8C1IKI5_CYPCA) HSP 1 Score: 64.7 bits (156), Expect = 1.320e-8 Identity = 42/142 (29.58%), Postives = 67/142 (47.18%), Query Frame = 1
Query: 142 FETNTRGEFTDESSVRAAPSPPLLLAVEAGLVRAVRELVVRGARVDTSRAEDGWNALHVCASLGNAPI--MRGHHRQAEE----RTWAGRTPLHRAALGGHTEIVLRLLVYGVSVDPIDKDGMTPLMLAAREGHWSTARALI 549
T+ + D+S S PL LAV G + ++ +++GARVD + + M + + E+ R A +TPLHRA L H E+V L+ +D ID +G++PL++A+R G W T L+
Sbjct: 159 LSTSVHINYLDKSK-----STPLHLAVRGGNIEVIKLCIIKGARVDQQQCDXXXXXXXXXXXXXXXXXXXMLSSYNKVEDIINIRDGANQTPLHRATLFDHVELVEYLISKEAEIDCIDCNGLSPLLMASRCGAWKTVAFLL 295
BLAST of mRNA_H-elongata_contig5512.12918.1 vs. uniprot
Match: A0A8C1IK34_CYPCA (Transient receptor potential cation channel, subfamily A, member 1b n=7 Tax=Cyprinus carpio TaxID=7962 RepID=A0A8C1IK34_CYPCA) HSP 1 Score: 64.7 bits (156), Expect = 1.320e-8 Identity = 42/142 (29.58%), Postives = 67/142 (47.18%), Query Frame = 1
Query: 142 FETNTRGEFTDESSVRAAPSPPLLLAVEAGLVRAVRELVVRGARVDTSRAEDGWNALHVCASLGNAPI--MRGHHRQAEE----RTWAGRTPLHRAALGGHTEIVLRLLVYGVSVDPIDKDGMTPLMLAAREGHWSTARALI 549
T+ + D+S S PL LAV G + ++ +++GARVD + + M + + E+ R A +TPLHRA L H E+V L+ +D ID +G++PL++A+R G W T L+
Sbjct: 171 LSTSVHINYLDKSK-----STPLHLAVRGGNIEVIKLCIIKGARVDQQQCDXXXXXXXXXXXXXXXXXXXMLSSYNKVEDIINIRDGANQTPLHRATLFDHVELVEYLISKEAEIDCIDCNGLSPLLMASRCGAWKTVAFLL 307 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig5512.12918.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig5512.12918.1 >prot_H-elongata_contig5512.12918.1 ID=prot_H-elongata_contig5512.12918.1|Name=mRNA_H-elongata_contig5512.12918.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=205bp MSPLCLACAGGHEDTAIFLLTRADADPNNVAGAVAAVAAVAGGLFETNTRback to top mRNA from alignment at H-elongata_contig5512:9870..10817- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig5512.12918.1 ID=mRNA_H-elongata_contig5512.12918.1|Name=mRNA_H-elongata_contig5512.12918.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=948bp|location=Sequence derived from alignment at H-elongata_contig5512:9870..10817- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig5512:9870..10817- >mRNA_H-elongata_contig5512.12918.1 ID=mRNA_H-elongata_contig5512.12918.1|Name=mRNA_H-elongata_contig5512.12918.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1230bp|location=Sequence derived from alignment at H-elongata_contig5512:9870..10817- (Himanthalia elongata Himel1 dioecious)back to top |