mRNA_H-elongata_contig5512.12917.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig5512.12917.1 vs. uniprot
Match: A0A6H5KYH1_9PHAE (Protein kinase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KYH1_9PHAE) HSP 1 Score: 759 bits (1959), Expect = 4.020e-242 Identity = 626/1512 (41.40%), Postives = 784/1512 (51.85%), Query Frame = 1
Query: 16 ERNGHLQRLADSSAKREAVAAVARRAEAFVYGSVEFALKT--------------QKWDLDAREHRMRLRRLGKFQTTILSDPPRAALKVTGGKDLLPPEPHASMRAPPALLLDLSPDRDDIAMRAVKKRRAATAEAVKGAKLALQDLEDWKRDVLTKRAAVTSFLRKTDPTRAFAVGRALSGCDSEDDKEGASLNGLDAFGGSW-----------------WFLAPESF------EGSESGRHGSWAGT--------------PGVSSPDGGEDPAGG--------------RSEHGGP-VGFVRALVALDPCLGAIRRANSAAKSEGRLSAAFETLREHVKSTLIDLMDLETSIPGGQEEACSDVDVGDDDEEGDQRRGETGTAPSTSLSSTEAAALDSKIDGLLLRLSGSADAKAGSEYDKKQGNDRALRAGANVHSGSVASGDRCGRSRSPHSLATLYAVGLGGAATMAEAEAETAECLTATAMRMVFGAAAGPLLRALDDAYQRLTKADLELRQMLPEAQALLEGPGSEEEQARESRSRLVTIRQQ--VVDEEDLLDELVSKLRRRKRQTAGDEEIRVIEEERLEVRARHATLRGVKLAELKSLRQTRAYQRFPELLLEYPNRAEVAFRSLLAGGIAVRDSDEWGEHHMASLLPVRSESSGSGIISGGGASPAGG----GDRMLDGIGGERCRLAEIDGSAVAIVE--VDCRDCEAERSLVASLLRFAPTSLRATGSMTPELSVVTGVALDGERALLEIPVEGALTAKAWL--STGVATVAASPAKQ---QRSPFSIGVQDLTQALNLGKIQEPEVTKGPKAEKIDLAAEQLEARRSNAEVWAVMVQALRGLAAVHAVSEKSTHGAICLSNIFVAAHSARESAARATTGPKNAAGFSKPLALQLVEVEADRTAAAGAGWSTSTLLSPPKMRGFRRAQLSPPSPAALARPSTEYMAPEVVRGQPFRQPADVYAFGIALRAAFCGGHEDVTYYSAAEEGSGGSTGKRS-----------------VLPHRCGPVEVMFRQALTEVLEKMLEEEESRRCTALEALASDFLR-IPPDEPPRLYPPTWSTFPTIHRGLSGTSHGAHPHWVAVALSAG--RKDFAMR-GRSWWESCFAVDVPINGQTSCNQIAKSERGETAEIEAMLRRSLAGARLHRLVRLQDRGLWTRFVCERDGVISSAPAAGTSAASPLDLADG---------ARINSPPVARFFADPRDVISLETLSAIVEPISPTSVSAKLGGR----TVTGTRLQDKESVVDDAPMSADRFSGWGSGSV--------RCTKEARFAAVAFALPSGEGKVEGVEDNAGEAAYANIRTVAVITAI-TGVSKENRGLAGTGAKATVCAKTSALPPAAGTGGLIIPASSTAKRAEDPFVGVE--PSIDDVTRVGGISISSSTARTMAAENSISLSLMPVADGLSPHAVNSIKTFESLRATTSDEHTCDPGLGGRHQDHGATTAVFAVRREACYPEYLATFS 4179
ER GH++RLAD+SAKR AV AVA A A V+ V+FALK Q+WDLDAR HR RLRRL KF++ ILSDPP+ V G +LLLDLSP+R+ A R VK R A AEA K KLAL+DLEDW+ + +RAAV FLR DPT A G + CD+ D G L G D GG + FLA E+ G S RH SW GT G + +G G RS P VG +RAL ALDPC+ A+R A SAAK+ RL A ETLREHVK GG P+ LS+ +A++LD+K+ GL+ RLSG DA SR SLA++Y GL GAA +EAE + E LTA A+ MV AAAGPLL ALDDAYQ A LELR++LP+A+ALL G GS E ARE+RSRLV++RQQ VVDEEDLL EL S+L RR+RQ A EEIR I++ERL RAR A LR KLAELK+LR++ AY+RFPELLLE+P+ AE AFRSLL G+ +RD DEW +HH+AS+ S G A P G+R+L G+GG CRLAEIDGSAVAIVE V CRD +AER LVA +L F P + R + PE++VV+GV+L +ALLE+ VEGALTAKAWL S TV P + P G +D P + +A + + R EVWAVM+QAL GLAAVHAVSE+S H A+CL NI VAA S+ P++ G PLA E A A +S+ P GFRRA+L PP PAALARPS +APEVVRGQ F QPADVYAFG ALRAA CG ++Y+ A +LP GP R+AL ++L+ MLEE+ SRRCT LEAL+SD+ R +P P YP WS FP R S T+ G+ PHWVAVAL+AG + D+A R W++S +AV+VP+ + A +E GE + +EA+LR SL ARL RLVRLQDR RFVC RD ISSA G R+ + VAR FADPRDV++ + L+AI S + ++ + GR TV GT + +D + D + G V R ARFAAVA A P E + +G G +RT+AV+ A+ +G +E+ G G + A A+G G L A++ + DPF+ ++ +DD+TRV GI +SS A S + +L P A GLS AV+SI +E A + T AV+ VRREACYPEYLATF+
Sbjct: 456 ERLGHVRRLADASAKRVAVEAVADGATASVHRFVDFALKVPMLVVGTQRETWTVQRWDLDARNHRTRLRRLDKFRSDILSDPPKQPTAVDGNN------------GGNSLLLDLSPERESRAARVVKGRTKAAAEATKEGKLALRDLEDWRGRISAERAAVEHFLRGADPTLALVPG---ASCDAAD---GEGLGGWDP-GGLYRPGGRAGCEVDVVIADPGFLAGEADGRAANDSGGRSRRHASWTGTGAEVIAPSRSTVGAAGAAFAEGDGSRRGXXXXXXXXXXXXXXHRSRAQQPAVGPLRALAALDPCVSALREARSAAKTGDRLGMALETLREHVKGR--------AGGRGGXXXXXXXXXXXX------XXXXXXXXGPAVELSAADASSLDAKVAGLVSRLSGGGDADXXXXXXXXXXXXXXX--------------XXXXXSRGSPSLASVYKDGLRGAAAASEAEVDATESLTARALGMVITAAAGPLLWALDDAYQA---AHLELRRLLPDAEALLGGAGSAGEVAREARSRLVSVRQQASVVDEEDLLKELESRLGRRRRQAADAEEIRSIDDERLHARARLAALRSAKLAELKALRRSGAYRRFPELLLEHPDPAERAFRSLLLSGVELRDVDEWEDHHLASVAS-----------SAGAAGPERASSEVGERVLAGLGGVGCRLAEIDGSAVAIVEASVGCRDRQAERDLVADILHFIPRARR----LPPEVAVVSGVSLQEGKALLEVNVEGALTAKAWLAASATAGTVDGKPVDHPGTEAEPAVDGAED-----------------APAPKVAAVAVDSASSERFQVEVWAVMIQALAGLAAVHAVSERSVHRAVCLDNILVAARSS----------PESPPGRLLPLAGGGGE-----GAVAPNSDGSSSSSDPSGQHGFRRAKLGPPFPAALARPSAGCIAPEVVRGQEFGQPADVYAFGCALRAACCGAKHAESFYATASXXXXXXXXXXXXXXXXXXXXXXXXXXELLLPVGLGPAFEPLREALAQLLDSMLEEDPSRRCTVLEALSSDYFRALPLRGPNPAYPLQWSPFPVRTRSFSSTAPGSQPHWVAVALAAGGLKGDYASALDRHWFDSTYAVEVPLLATAAVPGGACTEGGEGSRVEALLRSSLPEARLVRLVRLQDRARMLRFVCIRDAAISSAXXXXXXXXXXXXXXXGFPNXXXXXXGRVGNVSVARLFADPRDVVADDALTAI--STSGSDPASTVRGRPDCWTVGGTMAVTMTAAEEDPRDNDDARARGAGGPVSKAGEDLCRLAASARFAAVALAQPQVERRDDG---GRGGGKSMTLRTLAVVRAVVSGDPEEHPGWRREGTCSDSEGGGEAGGSASGNGWLQSAAAAVGRDKMDPFLDMDCMAKVDDLTRVAGIGLSSPPPSVADAGGSGNRTLEP-APGLSSPAVHSITGWE---AVSGXXXXXXXXXXXXXXXXXXTAAVYTVRREACYPEYLATFA 1861
BLAST of mRNA_H-elongata_contig5512.12917.1 vs. uniprot
Match: D8LGZ1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LGZ1_ECTSI) HSP 1 Score: 199 bits (506), Expect = 1.710e-51 Identity = 181/470 (38.51%), Postives = 233/470 (49.57%), Query Frame = 1
Query: 2878 MLEEEESRRCTALEALASDFLR-IPPDEPPRLYPPTWSTFPTIHRGLSGTSHGAHPHWVAVALSAG--RKDFAMR-GRSWWESCFAVDVPINGQTSCNQIAKSERGETAEIEAMLRRSLAGARLHRLVRLQDRGLWTRFVCERDGVISSA-----------------PAAGTSAASPLDLADGARINSPPVARFFADPRDVISLETLSAIVEPISPTSVSAKLGGR---TVTGTRLQDKESVVDDAPMSADRFSGWGSGSV--------RCTKEARFAAVAFALPSGEGKVEGVEDNAGEAAYANIRTVAVITAI-TGVSKENRGLAGTGAKATVCAKTSALPPAAGTGGLIIPASSTAKRAE-DPFVGVE--PSIDDVTRVGGISISSSTARTMAAENSISLSLMPVADGLSPHAVNSIKTFESLRATTSDEHTCDPGLGGRHQDHGATTAVFAVRREACYPEYLATFS 4179
MLEE+ SRRCT LEAL+SD+ R +P P YP WS FP R S T+ G PHWVAVAL+AG + D+A R W++S +AV+VP+ A SE GE + +EA+LR SL GARL RLVRLQDR RFVC+RD ISSA P G + G R++ VAR FADPRDV++ + L+AI S + SA GG TV GT + +D + D G V R ARFAAVA A P E + EG G +RT+AV+ AI +G +E+ G G + G L A++ R + DPF+ ++ +DD+TRV GI +SS A S + +L P A GLS AV+SI +E A + T AV+ VRREACYPEYLATF+
Sbjct: 1 MLEEDPSRRCTVLEALSSDYFRALPLRGPNPAYPLQWSPFPVRTRSFSSTAPGGQPHWVAVALAAGGLKGDYASALDRHWFDSTYAVEVPLLAAAVPGG-ACSEGGEGSRVEALLRSSLPGARLVRLVRLQDRARMLRFVCDRDAAISSAAXXXXXXXXXXXXXPGFPNTGXXXXXXXXXSVG-RVS---VARLFADPRDVVAGDALTAISTSGSDPA-SATRGGPGCWTVGGTAATTTPAAEEDLRDNDDARVRGAGGPVSKAGRDLCRLAASARFAAVALAQPQIERRDEG---GRGGGKSMTLRTLAVVRAIVSGDPEEHPGWRREGTCSGSEXXXXXXXXXXXNGWLQSVAAAAVDRDKMDPFLDIDCMAKVDDLTRVAGIGLSSPPPSVADAGGSGNRTLEP-APGLSSPAVHSITDWE---AVSGXXXXXXXXXXXXXXXXXXTAAVYTVRREACYPEYLATFA 457 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig5512.12917.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 2
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig5512.12917.1 >prot_H-elongata_contig5512.12917.1 ID=prot_H-elongata_contig5512.12917.1|Name=mRNA_H-elongata_contig5512.12917.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=1400bp LQEQCERNGHLQRLADSSAKREAVAAVARRAEAFVYGSVEFALKTQKWDLback to top mRNA from alignment at H-elongata_contig5512:2051..9113- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig5512.12917.1 ID=mRNA_H-elongata_contig5512.12917.1|Name=mRNA_H-elongata_contig5512.12917.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=7063bp|location=Sequence derived from alignment at H-elongata_contig5512:2051..9113- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig5512:2051..9113- >mRNA_H-elongata_contig5512.12917.1 ID=mRNA_H-elongata_contig5512.12917.1|Name=mRNA_H-elongata_contig5512.12917.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=8400bp|location=Sequence derived from alignment at H-elongata_contig5512:2051..9113- (Himanthalia elongata Himel1 dioecious)back to top |