mRNA_H-elongata_contig55106.12916.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig55106.12916.1
Unique NamemRNA_H-elongata_contig55106.12916.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig55106.12916.1 vs. uniprot
Match: D8LHG5_ECTSI (DNA primase large subunit n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LHG5_ECTSI)

HSP 1 Score: 535 bits (1378), Expect = 2.080e-187
Identity = 253/308 (82.14%), Postives = 278/308 (90.26%), Query Frame = 1
Query:    1 RHRLLSTPGA-IMDFERTTYYKIPFWQAADLIGKRQVYVEGGFAYVPVQRVITIVVSRFRMGISRSLIEASNHFAYVTSDARFGPLLQNMSKQYLGRDFGDGDGMGTDKITPGMLDSLAERSMPLCMKHLHSALNREHKLKHWGRLQYGLFLKGAGLGVDDAMAFWQGMFTKIMGLDQFQKQYAYNVRHMYGKEGKRTNYTPYRQKHFVHSCLKIIMGNPPGPGDHHGCPYRHFDADHLANLLSQVRVVGEDKSAILRYVKHKSYQLACQRHFEATHKGHEAAGINTEGVGNHPNAWMHASMEFHNAK 921
            R +LLS P A +M+F+RTTYY+IPFWQA+DLIGKRQVY+EGGFAYVPVQRV+TIVV+R+RMGIS+SL+EASNHFAYVTSD+RFGPLLQNMSKQYLGRDFG+GDG   D I PGML+SLAERSMPLCMK LHSALNREHKLKHWGRLQYGLFLKGAGL VDDAMAFWQ MFTKIMGLDQFQKQYAYNVRHMYGKEGKRTNYTPY       SCLKIIMGNPP  GDHHGCPYRH+D DHL++LLSQVR+   DK AILR VK K+YQLACQRHFEATHKG+EA+G++T+GVGNHPNAWMHASMEFH  K
Sbjct:  163 RSKLLSIPAAPVMEFDRTTYYRIPFWQASDLIGKRQVYLEGGFAYVPVQRVVTIVVARYRMGISKSLMEASNHFAYVTSDSRFGPLLQNMSKQYLGRDFGNGDGTDPDNIKPGMLNSLAERSMPLCMKQLHSALNREHKLKHWGRLQYGLFLKGAGLSVDDAMAFWQAMFTKIMGLDQFQKQYAYNVRHMYGKEGKRTNYTPY-------SCLKIIMGNPPAAGDHHGCPYRHYDEDHLSSLLSQVRIGATDKDAILRQVKSKNYQLACQRHFEATHKGYEASGVSTDGVGNHPNAWMHASMEFHKEK 463          
BLAST of mRNA_H-elongata_contig55106.12916.1 vs. uniprot
Match: A0A835YS26_9STRA (DNA primase large subunit n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YS26_9STRA)

HSP 1 Score: 412 bits (1060), Expect = 1.900e-139
Identity = 199/308 (64.61%), Postives = 237/308 (76.95%), Query Frame = 1
Query:    1 RHRLLSTPGAIM-DFERTTYYKIPFWQAADLIGKRQVYVEGGFAYVPVQRVITIVVSRFRMGISRSLIEASNHFAYVTSDARFGPLLQNMSKQYLGRDFGDGDGMGTDKITPGMLDSLAERSMPLCMKHLHSALNREHKLKHWGRLQYGLFLKGAGLGVDDAMAFWQGMFTKIMGLDQFQKQYAYNVRHMYGKEGKRTNYTPYRQKHFVHSCLKIIMGNPPGPGDHHGCPYRHFDADHLANLLSQVRVVGEDKSAILRYVKHKSYQLACQRHFEATHKGHEAAGINTEGVGNHPNAWMHASMEFHNAK 921
            R RLL+ PGA   +FER T+Y+IPF QA DLIG+R VY+EGG+AYVPVQRV+ IVV+RFR  +SRSL EAS  F  VT D RFGPLLQNMS+QY+GRDFG       D I P  LD++A RSMPLCM+ LH AL R+HKLKH GRLQYGLFLKGAGL ++DA AFWQ  FT++M +D F K YAYNVRHMYGKEGKRTNYTPY       SCLKIIMG  PG G+HHGCPYRHFD  HL+ L  Q+++   D+ A+  +VK ++YQLACQRHFEATH+G+E AG++ +GVGNHPNAW  ASM++  AK
Sbjct:  160 RSRLLTAPGATAAEFERCTFYRIPFAQATDLIGQRLVYLEGGYAYVPVQRVVAIVVARFRAALSRSLAEASGAFPAVTGDPRFGPLLQNMSRQYVGRDFGGXXXXXXDAIRPEHLDAMAARSMPLCMRGLHLALRRDHKLKHMGRLQYGLFLKGAGLSMEDAAAFWQSEFTRVMSVDAFTKGYAYNVRHMYGKEGKRTNYTPY-------SCLKIIMGAAPGAGEHHGCPYRHFDESHLSALFGQLKLERADRDAMAAHVKGRNYQLACQRHFEATHRGYEDAGVSADGVGNHPNAWTAASMQYWKAK 460          
BLAST of mRNA_H-elongata_contig55106.12916.1 vs. uniprot
Match: A0A7S3H234_9STRA (DNA primase large subunit n=2 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3H234_9STRA)

HSP 1 Score: 334 bits (857), Expect = 1.000e-108
Identity = 159/293 (54.27%), Postives = 205/293 (69.97%), Query Frame = 1
Query:   46 RTTYYKIPFWQAADLIGKRQVYVEGGFAYVPVQRVITIVVSRFRMGISRSLIEASNHFAYVTSDARFGPLLQNMSKQYLGRDFGDGDGMGTDKITPGMLDSLAERSMPLCMKHLHSALNREHKLKHWGRLQYGLFLKGAGLGVDDAMAFWQGMFTKIMGLDQFQKQYAYNVRHMYGKEGKRTNYTPYRQKHFVHSCLKIIMGNPPGPGDHHGCPYRHFDADHLANLLSQVRVVGEDKSAILRYVKHKSYQLACQRHFEATHKGH-EAAGINTEGVGNHPNAWMHASMEFHNAK 921
            +TT+YK+PF QA  L+  R VY+E GFAYVP+QR+++I+V+RFRM +SR+L EA+N F  V SD R GPLL+NM+KQ++G DF   +    DK++P  ++  AE +MPLCMK+LHS L REHKLKHWGRLQYGLFLKGAGL ++ A  FW+  FTK++  DQF K YAY+ RHMYGKEG R NYTPY       SC+KIIMG PP  G  HGCPYRH   + L++LLS +++   D S I    K  +YQ+ACQRHF+ TH GH     + ++ V NHPN W   S+ +H  K
Sbjct:  177 KTTFYKVPFQQALSLVSSRSVYLEKGFAYVPLQRLVSIIVTRFRMQLSRALAEAANSFDIVGSDHRIGPLLKNMNKQFIGNDFTKTN-QSIDKLSPDKIELAAEVNMPLCMKNLHSNLKREHKLKHWGRLQYGLFLKGAGLDLEGAQQFWESHFTKLISHDQFVKSYAYSFRHMYGKEGARKNYTPY-------SCMKIIMGTPPETGAFHGCPYRHMPDNQLSSLLSSLKLSTPDVSEIAALAKSSNYQIACQRHFDVTHPGHLNNPELKSDAVANHPNLWFQTSVNYHKLK 461          
BLAST of mRNA_H-elongata_contig55106.12916.1 vs. uniprot
Match: A0A7S4A6J1_9STRA (DNA primase large subunit n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S4A6J1_9STRA)

HSP 1 Score: 329 bits (844), Expect = 6.560e-107
Identity = 160/294 (54.42%), Postives = 205/294 (69.73%), Query Frame = 1
Query:   43 ERTTYYKIPFWQAADLIGKRQVYVEGGFAYVPVQRVITIVVSRFRMGISRSLIEASNHFAYVTSDARFGPLLQNMSKQYLGRDFGDGDGMGTDKITPGMLDSLAERSMPLCMKHLHSALNREHKLKHWGRLQYGLFLKGAGLGVDDAMAFWQGMFTKIMGLDQFQKQYAYNVRHMYGKEGKRTNYTPYRQKHFVHSCLKIIMGNPPGPGDHHGCPYRHFDADHLANLLSQVRVVGEDKSAILRYVKHKSYQLACQRHFEATHKGHEAAG----INTEGVGNHPNAWMHASMEFH 912
            +  TYY++PF +A DLIG+R+VY+E G+AYVP  ++ +IVVSRFR  +SRSL +AS   A   +D R GPLL N+ K  L R   D D +  + ITP  +D+LA++SMPLCM+ LH AL R+HKLKHWGR QYGLFLK AGL ++D + F+Q  FTKIM  DQF K+YAYN+RH YGKEGKRT Y+PY        C K++M   PGPG++HGCPYRHFDADHLA +LS+  +   ++S +L   K ++YQ+ACQRHFE  HK     G     N +GVGNHPNAW  AS  +H
Sbjct:  172 QTATYYRVPFLEAIDLIGRREVYLEKGYAYVPQAKLHSIVVSRFRASLSRSLAKASGSLAAAAADPRLGPLLTNVEKHDLERQDVDDDDI--EGITPEQIDALADQSMPLCMQQLHYALKRDHKLKHWGRQQYGLFLKAAGLSMEDQLRFFQAEFTKIMTHDQFSKEYAYNIRHRYGKEGKRTEYSPY-------GCYKLVMDMAPGPGEYHGCPYRHFDADHLAAVLSKTSLDAGEQSLVLGKAKERNYQIACQRHFEFAHKKQTVNGKKVVANLDGVGNHPNAWFKASRVYH 456          
BLAST of mRNA_H-elongata_contig55106.12916.1 vs. uniprot
Match: W7TRK8_9STRA (DNA primase large subunit n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TRK8_9STRA)

HSP 1 Score: 326 bits (836), Expect = 1.890e-105
Identity = 158/296 (53.38%), Postives = 210/296 (70.95%), Query Frame = 1
Query:   34 MDFERTTYYKIPFWQAADLIGKRQVYVEGGFAYVPVQRVITIVVSRFRMGISRSLIEASNHFAYVTSDARFGPLLQNMSKQYLGRDFGDGDGMGTDKITPGMLDSLAERSMPLCMKHLHSALNREHKLKHWGRLQYGLFLKGAGLGVDDAMAFWQGMFTKIMGLDQFQKQYAYNVRHMYGKEGKRTNYTPYRQKHFVHSCLKIIMGNPPGPGDHHGCPYRHFDADHLANLLSQVRVVGEDKSAILRYVKHKSYQLACQRHFEATHKGHEAAGINTEGVGNHPNAWMHASMEFHNAK 921
            ++  RT +++IPF QA DL+  RQV++EGGFAYVPV+R+++I+V+RFR  +SR L+EA     YV +D R  PL+ NM+KQY G+DF  G   G D +    LD LA+RSMP+CM+ LH  L  EHKLKHWGRLQYGLFLKGAG+G++DA+ FW+  FTKIM  D F KQYAY++RH +GKEGKR +YTP+       +C KII+G  PG G+ HGCP+RH+D  +L  LL +  V   D+  +++  K + YQLAC +HFE THKG E+  I+ +GVGNHPNA+  ASM F+  K
Sbjct:  179 VEVTRTQFFRIPFTQALDLVAHRQVFLEGGFAYVPVERLVSIIVARFRSSLSRGLLEAFGAMPYVLTDGRIAPLVSNMAKQYTGKDF-SGTKTG-DSLDLNDLDMLADRSMPMCMRVLHKNLRLEHKLKHWGRLQYGLFLKGAGIGMEDAIQFWEKEFTKIMTTDVFNKQYAYSIRHYFGKEGKRKDYTPF-------NCSKIILGPGPGHGEFHGCPFRHYDEANLNKLLERAGVGAMDRDEMIKLSKGQHYQLACMKHFETTHKGAESL-ISMDGVGNHPNAFFAASMAFYKEK 464          
BLAST of mRNA_H-elongata_contig55106.12916.1 vs. uniprot
Match: F0YER9_AURAN (DNA primase large subunit n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YER9_AURAN)

HSP 1 Score: 321 bits (823), Expect = 7.100e-104
Identity = 155/288 (53.82%), Postives = 197/288 (68.40%), Query Frame = 1
Query:   55 YYKIPFWQAADLIGKRQVYVEGGFAYVPVQRVITIVVSRFRMGISRSLIEASNHFAYVTSDARFGPLLQNMSKQYL--GRDFGDGDGMGTDKITPGMLDSLAERSMPLCMKHLHSALNREHKLKHWGRLQYGLFLKGAGLGVDDAMAFWQGMFTKIMGLDQFQKQYAYNVRHMYGKEGKRTNYTPYRQKHFVHSCLKIIMGNPPGPGDHHGCPYRHFDADHLANLLSQVRVVGEDKSAILRYVKHKSYQLACQRHFEATHKGHEAAGINTEGVGNHPNAWMHASMEFH 912
            YY++PF +A DLIG+R+VY+E G+AYVP  ++  IVV+RFR  +SRSL +AS+  A    D R  PLL N+ K  L  G+D  D D  G   I P  +D+LA++SMPLCM+ LH AL R+HKLKHWGR QYGLFLK AGL ++D + F+Q  FTKIM +D F K+YAYN+RH YGKEGKRT Y+PY        C K+IM   PGPG++HGCPY+H+D DHLA++L  + +  E   AIL   K K+YQLACQ+HFE TH          +GVGNHPNAW  AS  +H
Sbjct:  176 YYRVPFVEAIDLIGRREVYLEKGYAYVPAAKLHAIVVARFRSALSRSLAKASSSLAAAAGDPRLSPLLNNIEKHDLSNGKDLEDDDVEG---IHPEQIDALAKQSMPLCMQQLHGALKRDHKLKHWGRQQYGLFLKAAGLSMEDQLRFFQAEFTKIMTVDAFSKEYAYNIRHRYGKEGKRTEYSPY-------GCYKLIMDMAPGPGEYHGCPYKHYDDDHLASILGAMDISRESSQAILGQAKSKNYQLACQKHFEVTHPKAAGVAARPDGVGNHPNAWFKASRIYH 453          
BLAST of mRNA_H-elongata_contig55106.12916.1 vs. uniprot
Match: A0A7S1ZF14_9STRA (Hypothetical protein n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S1ZF14_9STRA)

HSP 1 Score: 311 bits (798), Expect = 8.260e-100
Identity = 153/314 (48.73%), Postives = 218/314 (69.43%), Query Frame = 1
Query:    1 RHRLLSTPGAIM---DFERTTYYKIPFWQAADLIGKRQVYVEGGFAYVPVQRVITIVVSRFRMGISRSLIEASNHFAYVTSD-ARFGPLLQNMSKQYLGRDFGDGDG-MGTDKITPGMLDSLAERSMPLCMKHLHSALNREHKLKHWGRLQYGLFLKGAGLGVDDAMAFWQGMFTKIMGLDQFQKQYAYNVRHMYGKEGKRTNYTPYRQKHFVHSCLKIIMGNPPGPGDHHGCPYRHFDADHLANLLSQVRV-VGEDKSAILRYVKHKSYQLACQRHFEATHKGHEAA-GINTEGVGNHPNAWMHASMEFHNAK 921
            R  LLS P + +   +   + +Y++PF QA DL+ KR  YV  G AYVP  R+++I+V+++RM +S+SL+ A+  F  VT +  R  PLL++M+ QYLGRD+G  D  +  D++T   +DS A++SMPLCM  LH+ + R+ KLKH GRLQYGLFLKG G+  ++ +AF+Q +FTKIM  +QF K Y+YN+RHM+G+EGKR +Y+PY       SC+KII+GNPP  G+ HGCP+RH+D   L++LL+++ V    D+SAIL   K ++YQLAC +HFE  H G  +  G++  GVGNHPNAW  AS+ +H AK
Sbjct:  187 REFLLSIPNSNVSPGELSVSVFYQVPFVQALDLVAKRLCYVHDGMAYVPQSRMVSIIVAKYRMALSKSLVRAALSFGEVTEENERIAPLLKSMNSQYLGRDYGKEDTPLENDELTANTVDSYAKQSMPLCMSQLHAGMKRDSKLKHQGRLQYGLFLKGGGMSTEEHLAFFQRVFTKIMTTEQFNKNYSYNIRHMHGQEGKRASYSPY-------SCMKIILGNPPQGGESHGCPFRHYDDSSLSSLLTKLNVGSASDRSAILAQKKARNYQLACAKHFEVMHPGAASVEGLSMNGVGNHPNAWFAASVGYHKAK 493          
BLAST of mRNA_H-elongata_contig55106.12916.1 vs. uniprot
Match: B8CCN9_THAPS (DNA primase (Fragment) n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8CCN9_THAPS)

HSP 1 Score: 306 bits (784), Expect = 1.270e-98
Identity = 154/309 (49.84%), Postives = 214/309 (69.26%), Query Frame = 1
Query:    1 RHRLLSTPGAI--MDFERTTYYKIPFWQAADLIGKRQVYVEGGFAYVPVQRVITIVVSRFRMGISRSLIEASNHFAYVTSD--ARFGPLLQNMSKQYLGRDFGDG--DGMGTDKITPGMLDSLAERSMPLCMKHLHSALNREHKLKHWGRLQYGLFLKGAGLGVDDAMAFWQGMFTKIMGLDQFQKQYAYNVRHMYGKEGKRTNYTPYRQKHFVHSCLKIIMGNPPGPG-DHHGCPYRHFDADHLANLLSQVRVVG-EDKSAILRYVKHKSYQLACQRHFEATHKGHEAA-GINTEGVGNHPNAWMHAS 900
            R +LLS PG+   ++F  T YY++PF QA +L+ KR+ +VE GFAYVP+ R+++IV ++FR  +S+SL  A+  F  V +D  +R GPLL++M+ QY G    +   D  G + +T   +D+LA +SMPLCM+ LH  L R+HKLKH GRLQYGLFLKGAG+ +++ M F+Q  FTKIM  +QF K YAYN+RH +GKEGKR  YTPY       +C+KII GNPP  G +HHGCPY+H+D  +L+ LL+++++ G  D+ AI+ + K  ++QLAC +HFE  H    +  GIN +GVGNHPNAW  AS
Sbjct:  135 RDKLLSVPGSPNPLEFNATEYYRVPFVQALELVSKRECFVEKGFAYVPLGRIVSIVAAKFRATLSKSLALAAGVFGQVANDESSRIGPLLKSMNSQYTGPGAPNAVMDASGENALTAATVDALAAQSMPLCMQQLHVGLKRDHKLKHQGRLQYGLFLKGAGMPMEEHMLFFQREFTKIMTSEQFNKNYAYNIRHTHGKEGKRATYTPY-------NCMKIIFGNPPQTGVEHHGCPYKHYDDQNLSALLTKLKIGGLSDRDAIMAHKKEGNFQLACTKHFEVMHPAATSVEGINLDGVGNHPNAWFSAS 436          
BLAST of mRNA_H-elongata_contig55106.12916.1 vs. uniprot
Match: A0A7S2UM83_9STRA (DNA primase large subunit n=2 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2UM83_9STRA)

HSP 1 Score: 306 bits (784), Expect = 9.100e-98
Identity = 148/301 (49.17%), Postives = 207/301 (68.77%), Query Frame = 1
Query:   40 FERTTYYKIPFWQAADLIGKRQVYVEGGFAYVPVQRVITIVVSRFRMGISRSLIEASNHFAYVTSD-ARFGPLLQNMSKQYLGRD-FGDGDGMGT-DKITPGMLDSLAERSMPLCMKHLHSALNREHKLKHWGRLQYGLFLKGAGLGVDDAMAFWQGMFTKIMGLDQFQKQYAYNVRHMYGKEGKRTNYTPYRQKHFVHSCLKIIMGNPPGPGDHHGCPYRHFDADHLANLLSQVRV-VGEDKSAILRYVKHKSYQLACQRHFEATHKGHEAA-GINTEGVGNHPNAWMHASMEFHNAKVD 927
            F  T Y+ +PF QA DL+ KRQ YVE G AYVP+ ++++IV ++F   +S+SL  A   F+ VT++  R  PLL++M  QY  ++ +  G+GM    ++T   +D+ A +SMPLCM  LHS L ++HKLKHWGRLQYGLFLKGAG+ +++++ F+Q  F KI+  +QF K Y+YN+RHMYGKEGKR +YTPY       +C KII+GNPP  GDHHGCPYRH+D  HL++LL+++ +    D+ AI+ + K ++ QLAC RHFEA H    +  G+  + VGNHPNAW   S+ +H AK D
Sbjct:  190 FPTTPYFAVPFTQALDLVAKRQCYVEAGLAYVPLPKIVSIVTNKFTTALSKSLTNAGYAFSKVTNENGRINPLLKSMHSQYADKNRYTTGEGMSDGQELTSQNVDTYAAQSMPLCMSQLHSGLQQDHKLKHWGRLQYGLFLKGAGMTMEESLMFFQREFGKIITAEQFNKNYSYNIRHMYGKEGKRASYTPY-------NCTKIILGNPPQSGDHHGCPYRHYDDTHLSSLLTKMNIGTPADRDAIMSHKKAQNPQLACVRHFEAVHPAATSVKGVTLDNVGNHPNAWFAGSVSYHAAKSD 483          
BLAST of mRNA_H-elongata_contig55106.12916.1 vs. uniprot
Match: K0RJG2_THAOC (Uncharacterized protein n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0RJG2_THAOC)

HSP 1 Score: 300 bits (769), Expect = 1.610e-96
Identity = 150/316 (47.47%), Postives = 218/316 (68.99%), Query Frame = 1
Query:    1 RHRLLSTPGAI--MDFERTTYYKIPFWQAADLIGKRQVYVEGGFAYVPVQRVITIVVSRFRMGISRSLIEASNHFAYVTSD--ARFGPLLQNMSKQYLGRDFGDGD-GMGTDKI-TPGMLDSLAERSMPLCMKHLHSALNREHKLKHWGRLQYGLFLKGAGLGVDDAMAFWQGMFTKIMGLDQFQKQYAYNVRHMYGKEGKRTNYTPYRQKHFVHSCLKIIMGNPPGPG-DHHGCPYRHFDADHLANLLSQVRVVGE-DKSAILRYVKHKSYQLACQRHFEATHK-GHEAAGINTEGVGNHPNAWMHASMEFHNAK 921
            R +LLS  G    ++F  T YY++PF QA +L+ +R+ YVE GFA+VP+ R+++IVV++FR+ +S+S+  A   F  V  +   R GPLL++M+ QY G    D   G+  +++ T   +D LA +SMPLCM+ LH+ L R+HKLKH GRLQ+GLFLKG+G+ +++   F+Q  FT+IM  +QF KQY+Y++RHM+GKEGKR +YTPY       +C+KIIMGNPP  G +HHGCPY+H+D  +L+ LL ++++    D+ AI+R  K  ++QLAC + FE  H      AG+N +GVGNHPNAW +AS+ +H AK
Sbjct:   99 RGKLLSVTGGPNPVEFLSTDYYRVPFVQALELVARRECYVEDGFAFVPLTRIVSIVVAKFRVSLSKSMALAVGAFGQVAHEESTRIGPLLKSMNSQYTGPSTPDAMVGLDGERVLTAATVDGLAAQSMPLCMQQLHTGLKRDHKLKHQGRLQFGLFLKGSGMSLEEHTLFFQREFTRIMTSEQFNKQYSYSIRHMHGKEGKRASYTPY-------NCMKIIMGNPPQSGVEHHGCPYKHYDDQNLSALLGKLKIGDSADRDAIMRLKKEGNFQLACAKQFEVQHPLASTVAGVNMDGVGNHPNAWFNASVSYHQAK 407          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig55106.12916.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LHG5_ECTSI2.080e-18782.14DNA primase large subunit n=2 Tax=Ectocarpus TaxID... [more]
A0A835YS26_9STRA1.900e-13964.61DNA primase large subunit n=1 Tax=Tribonema minus ... [more]
A0A7S3H234_9STRA1.000e-10854.27DNA primase large subunit n=2 Tax=Spumella elongat... [more]
A0A7S4A6J1_9STRA6.560e-10754.42DNA primase large subunit n=1 Tax=Pelagomonas calc... [more]
W7TRK8_9STRA1.890e-10553.38DNA primase large subunit n=2 Tax=Monodopsidaceae ... [more]
F0YER9_AURAN7.100e-10453.82DNA primase large subunit n=1 Tax=Aureococcus anop... [more]
A0A7S1ZF14_9STRA8.260e-10048.73Hypothetical protein n=1 Tax=Ditylum brightwellii ... [more]
B8CCN9_THAPS1.270e-9849.84DNA primase (Fragment) n=1 Tax=Thalassiosira pseud... [more]
A0A7S2UM83_9STRA9.100e-9849.17DNA primase large subunit n=2 Tax=Attheya septentr... [more]
K0RJG2_THAOC1.610e-9647.47Uncharacterized protein n=1 Tax=Thalassiosira ocea... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig55106contigH-elongata_contig55106:237..3599 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score533.1
Seed ortholog evalue8.8e-149
Seed eggNOG ortholog2880.D8LHG5
Preferred namePRIM2
KEGG rclassRC00151,RC02795
KEGG koko:K01101,ko:K02685
KEGG ReactionR00375,R00376,R00377,R00378,R03024
KEGG Pathwayko00230,ko00240,ko00627,ko01100,ko01120,ko03030,map00230,map00240,map00627,map01100,map01120,map03030
KEGG ModuleM00261
GOsGO:0000082,GO:0000228,GO:0000278,GO:0000428,GO:0000723,GO:0001654,GO:0001745,GO:0003674,GO:0003676,GO:0003677,GO:0003697,GO:0003824,GO:0003887,GO:0003896,GO:0003899,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005635,GO:0005654,GO:0005657,GO:0005658,GO:0005694,GO:0006139,GO:0006259,GO:0006260,GO:0006261,GO:0006269,GO:0006270,GO:0006271,GO:0006273,GO:0006281,GO:0006302,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0006996,GO:0007049,GO:0007275,GO:0007423,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009653,GO:0009887,GO:0009987,GO:0012505,GO:0016043,GO:0016070,GO:0016740,GO:0016772,GO:0016779,GO:0018130,GO:0019438,GO:0019725,GO:0022402,GO:0022616,GO:0030880,GO:0030894,GO:0031967,GO:0031974,GO:0031975,GO:0031981,GO:0032200,GO:0032201,GO:0032501,GO:0032502,GO:0032774,GO:0032991,GO:0032993,GO:0033260,GO:0033554,GO:0034061,GO:0034062,GO:0034641,GO:0034645,GO:0034654,GO:0042592,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043596,GO:0043601,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044446,GO:0044454,GO:0044464,GO:0044770,GO:0044772,GO:0044786,GO:0044843,GO:0046483,GO:0048513,GO:0048592,GO:0048731,GO:0048749,GO:0048856,GO:0050896,GO:0051276,GO:0051716,GO:0055029,GO:0060249,GO:0061695,GO:0065007,GO:0065008,GO:0070013,GO:0071704,GO:0071840,GO:0071897,GO:0090304,GO:0090596,GO:0097159,GO:0097747,GO:0140097,GO:0140098,GO:1901360,GO:1901362,GO:1901363,GO:1901576,GO:1902295,GO:1902318,GO:1902494,GO:1902969,GO:1902981,GO:1903047,GO:1990234
EggNOG free text desc.DNA primase activity
EggNOG OGsCOG2219@1,KOG2267@2759
EC3.1.3.41
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko03032
Hectar predicted targeting categoryother localisation
Exons7
Model size951
Cds size951
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930898.277675-CDS-H-elongata_contig55106:236..3411622930898.277675-CDS-H-elongata_contig55106:236..341Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig55106 237..341 +
1691679616.5373187-CDS-H-elongata_contig55106:236..3411691679616.5373187-CDS-H-elongata_contig55106:236..341Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig55106 237..341 +
1622930898.2917376-CDS-H-elongata_contig55106:824..9801622930898.2917376-CDS-H-elongata_contig55106:824..980Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig55106 825..980 +
1691679616.5498216-CDS-H-elongata_contig55106:824..9801691679616.5498216-CDS-H-elongata_contig55106:824..980Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig55106 825..980 +
1622930898.3149002-CDS-H-elongata_contig55106:1399..14951622930898.3149002-CDS-H-elongata_contig55106:1399..1495Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig55106 1400..1495 +
1691679616.5600429-CDS-H-elongata_contig55106:1399..14951691679616.5600429-CDS-H-elongata_contig55106:1399..1495Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig55106 1400..1495 +
1622930898.3357425-CDS-H-elongata_contig55106:2041..21821622930898.3357425-CDS-H-elongata_contig55106:2041..2182Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig55106 2042..2182 +
1691679616.5718365-CDS-H-elongata_contig55106:2041..21821691679616.5718365-CDS-H-elongata_contig55106:2041..2182Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig55106 2042..2182 +
1622930898.3543859-CDS-H-elongata_contig55106:2372..25031622930898.3543859-CDS-H-elongata_contig55106:2372..2503Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig55106 2373..2503 +
1691679616.5817103-CDS-H-elongata_contig55106:2372..25031691679616.5817103-CDS-H-elongata_contig55106:2372..2503Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig55106 2373..2503 +
1622930898.3738034-CDS-H-elongata_contig55106:2856..29591622930898.3738034-CDS-H-elongata_contig55106:2856..2959Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig55106 2857..2959 +
1691679616.5911727-CDS-H-elongata_contig55106:2856..29591691679616.5911727-CDS-H-elongata_contig55106:2856..2959Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig55106 2857..2959 +
1622930898.3905454-CDS-H-elongata_contig55106:3380..35991622930898.3905454-CDS-H-elongata_contig55106:3380..3599Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig55106 3381..3599 +
1691679616.6077907-CDS-H-elongata_contig55106:3380..35991691679616.6077907-CDS-H-elongata_contig55106:3380..3599Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig55106 3381..3599 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig55106.12916.1prot_H-elongata_contig55106.12916.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig55106 237..3599 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig55106.12916.1

>prot_H-elongata_contig55106.12916.1 ID=prot_H-elongata_contig55106.12916.1|Name=mRNA_H-elongata_contig55106.12916.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=317bp
RHRLLSTPGAIMDFERTTYYKIPFWQAADLIGKRQVYVEGGFAYVPVQRV
ITIVVSRFRMGISRSLIEASNHFAYVTSDARFGPLLQNMSKQYLGRDFGD
GDGMGTDKITPGMLDSLAERSMPLCMKHLHSALNREHKLKHWGRLQYGLF
LKGAGLGVDDAMAFWQGMFTKIMGLDQFQKQYAYNVRHMYGKEGKRTNYT
PYRQKHFVHSCLKIIMGNPPGPGDHHGCPYRHFDADHLANLLSQVRVVGE
DKSAILRYVKHKSYQLACQRHFEATHKGHEAAGINTEGVGNHPNAWMHAS
MEFHNAKVDCYVFVFV*
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mRNA from alignment at H-elongata_contig55106:237..3599+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig55106.12916.1 ID=mRNA_H-elongata_contig55106.12916.1|Name=mRNA_H-elongata_contig55106.12916.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=3363bp|location=Sequence derived from alignment at H-elongata_contig55106:237..3599+ (Himanthalia elongata Himel1 dioecious)
AGGCATCGGCTGCTGTCGACGCCGGGGGCTATTATGGATTTTGAACGGAC CACATACTACAAGATCCCTTTCTGGCAAGCCGCGGACCTCATCGGCAAGC GTCAGGTACGTGGCAAATGTAGTGCTCTAGACTCAACTGAAGGAACATCG CGCCGCAACGTGCGCGTGGCGGTCGTGGCGCCGTGAGGCCTCCTCCGCGC GGCGCAATGCGGAGCCCCGTTACTCTTGCGCCATACCTCATTGTGTTGTG CTGTATTGTGTGGTGTTTTTTTTTGCGGAAAAGACGGCGTAAGATCGATG AGGGCGTAGCATTATGCAAGATTTGAGCCTGGACTTGCCGCTCGTCCTGA CAGTGTAAAGTGGGGCGTCCGGGGAAGGGCGGGGGGCTTGTAGCCCTAGG GTGTCGGGCTCTNNNNNNNNNNGAGCCTGGACTTGCCGCTCGTCCGGACG GTGGAGGGGGGGGGGGCGGGGGAGGGGCGGGGGGGCTGGGAGCCCTAGGG TGTCGGGCTCTAGGGCAGGTATGGGGGAGGGGGATGTTTCATTAACGACA ATAATGGACGGCACGCGCGCACACGGCTGGCGCTGCAGGTGTACGTGGAG GGCGGCTTCGCGTACGTTCCCGTTCAAAGGGTGATCACCATCGTCGTGTC GCGATTCCGCATGGGCATATCTCGATCGCTGATAGAAGCCTCCAACCACT TCGCGTACGTCACCTCAGACGCGCGTTTCGGGCCTCTGCTTCAGGTGCAA TACTGCTGTGTGTGTACTCTCGGGCATCCAAAGCCGCTGATCGTCTGTAC CGCAGGGAGATATATTATACCGGAGAAGTCATGATACGGTCAGGAAGTTA TTCCCGTCTTTGGCAATTGTTGAAGCCTGTCTTATCCTGGGCCAAATCAT GGTTTTGTGTCTTGAAAAATAATATTCGATTTATTTTCCTACTGCTACTG CTTCAGCAAACCGATAAACATCTCTCGCGTTGGACCTTCCGTTTCCCTAG CAGTGCTCGCCTCTTATGGGTGCAAATCCACGCCCTCTCGTCCTCTCTAT ATTCACGTCGTCCTGTCCCGTCCTGTCCCGTCCTGTCCCGTCCCGTCAAC CCCATCCCTTGATCTAAGCCATTTTGTAACGGTTTGCTCTGTACTGGATG TGTGTCTGTCTAGAACATGAGCAAGCAGTACCTCGGGCGTGACTTCGGCG ACGGTGACGGTATGGGCACGGATAAAATCACGCCGGGGATGCTCGACTCG CTCGCAGAGGTAGCGAAAAGGCTCTCACTACCCAAGAAAAAAATGTTGCG ATTACGTGTGTACAAGTATCTGTGTCTGAGTATGTGCGAGAGAAATATCT GTTGTCATCTGTTTCATCTGCTTACGCGGTACATGTACGTGATCTTTTTG TTTGTTCTCTTACAAGTGGTGATTGAACCATCCAATCATAGGGATTGGGA TTGGGGGGGGGGTAAAGCCCTACGACCGGGCATGCGATAATTCGATCTCC GGAAGGGGACGAATTTTTATCCTCCCTCCCTAAACCGGGGACGCTGAAAA CAATTCCCCCACACACACATCCTTTCGTTGGATTGCCCGTTTTTGGTTAT TGCATTGGATTTTCTCTTTGCGACAGGGTAAAAATGTGCGGCATGATGTG TCGTTATGTGATTATGTATGACTTGGTGAATATGTGCGTGTGGGGGAGGG GGAGGGTACATCCGTCTGGGTCTATTCGTGTGTGTGGGCGCGCGAGTGTT TCTGATTATCACCCCCATACCGAAATATGCTCTACTCTCGCATTTTCTGG CGCAGCGATCCATGCCGTTGTGCATGAAGCACCTTCACTCGGCGTTGAAT CGGGAGCATAAGCTCAAGCACTGGGGGCGACTCCAGTACGGTCTTTTCCT TAAGGGTGCGGGCCTTGGCGTGGACGACGCGATGGCGTTCTGGCAGGTGA AACAATCCGATAGTTCCCCGCCATGCCACGGCGTGCAGCGGTGTTCCTTT CCCATCCTCGCGAAGGACCCTAGGCGCTGATAACGCCGCTTTTTTCTCCT GTTGGTAGGAGAGTTTTGACAAATTTTCTGGCGCGCAATCCTGCTTTAAC TTTACGCCGACGCCGCATGTGTGTGAAAACCTGCAGGGTATGTTCACGAA GATCATGGGACTCGACCAGTTCCAGAAACAATACGCGTACAACGTCCGGC ACATGTACGGGAAGGAGGGCAAGCGCACCAACTACACCCCTTACAGGCAA AAACATTTCGTTCATTCGTGCAACTTAAAAACCCCCGCGACCGCGCGCGC GCAAGAAGTCCTAGTGAAGCACCAATCCGACTGCACCCCCCAGTGTGGAG AGGCAGCCTTAGTTTATTGGTTTTATGTGGGGGGTTTTCTAAGGCAAGCG TCTCGGATACAACATATTGCGGTTTGGTGCTGTCTGTTGAATGCTTTACG AGAGACAATGGCCAGAGCAGGGTGTAAAATATAAGCGCCACGCTAGATTG TGTTACTAACCCCGGGGCCCAGAACCCGAAAACGTTCCCAAGGCCAAACG AAATGAAAACCTACGCGCGTTTTGTTTCGGGGACGGGACGGGGCGGGGCC ATTGGTTGTCTTGGTTGCAGTTGCCTCAAGATTATTATGGGGAACCCGCC GGGACCCGGCGATCACCACGGCTGCCCTTACCGCCACTTCGATGCCGATC ACCTCGCCAACCTTCTGTCCCAGGTAAGATTAAGAGAGACAGACCAACGT TGTGCAGATTGCAGGCCCGCTTTCGGCACGTCTTATCGTCGAGGATTACT GGTTCGAGGAAATCGATTAACTCCACGAGACAGTGTAGGCTGTCTCCTAT CGCCCCCTGGAATGAACAACTCCCACCATCAATCTCTCTCCCATTCTCGT CAGAAAAAAAAACGGTGGTAAAATGTCAAAAAGAAAAAACTTATCTCCCC CCCCCCCCCCCCCCCCCCCCCCCCCCCACAAAAACACAGAAAAAACCCCG CTCGGGGAAAGGGGGTGAGAAGAGGGAGAGGGACCCTTGCCCTAAAAGAA AGAATACTCGGCAAGAATTAGAAAGCCTGACATATTCGATTGACTACGGT AGTATGTACACATTCCGATGTTGCTTTTTGTATGGGCGCCTCAGGTACGC GTTGTGGGAGAAGACAAAAGCGCCATCTTGCGATATGTCAAGCACAAAAG CTACCAGCTGGCTTGCCAGCGGCATTTCGAGGCTACCCACAAGGGTCACG AGGCCGCGGGCATTAACACCGAGGGTGTCGGGAATCACCCCAACGCGTGG ATGCACGCCTCGATGGAGTTCCACAACGCAAAGGTGGATTGCTACGTTTT TGTTTTTGTTTAA
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Coding sequence (CDS) from alignment at H-elongata_contig55106:237..3599+

>mRNA_H-elongata_contig55106.12916.1 ID=mRNA_H-elongata_contig55106.12916.1|Name=mRNA_H-elongata_contig55106.12916.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1902bp|location=Sequence derived from alignment at H-elongata_contig55106:237..3599+ (Himanthalia elongata Himel1 dioecious)
AGGCATCGGCTGCTGTCGACGCCGGGGGCTATTATGGATTTTGAACGGAC
CACATACTACAAGATCCCTTTCTGGCAAGCCGCGGACCTCATCGGCAAGC
GTCAGAGGCATCGGCTGCTGTCGACGCCGGGGGCTATTATGGATTTTGAA
CGGACCACATACTACAAGATCCCTTTCTGGCAAGCCGCGGACCTCATCGG
CAAGCGTCAGGTGTACGTGGAGGGCGGCTTCGCGTACGTTCCCGTTCAAA
GGGTGATCACCATCGTCGTGTCGCGATTCCGCATGGGCATATCTCGATCG
CTGATAGAAGCCTCCAACCACTTCGCGTACGTCACCTCAGACGCGCGTTT
CGGGCCTCTGCTTCAGGTGTACGTGGAGGGCGGCTTCGCGTACGTTCCCG
TTCAAAGGGTGATCACCATCGTCGTGTCGCGATTCCGCATGGGCATATCT
CGATCGCTGATAGAAGCCTCCAACCACTTCGCGTACGTCACCTCAGACGC
GCGTTTCGGGCCTCTGCTTCAGAACATGAGCAAGCAGTACCTCGGGCGTG
ACTTCGGCGACGGTGACGGTATGGGCACGGATAAAATCACGCCGGGGATG
CTCGACTCGCTCGCAGAGAACATGAGCAAGCAGTACCTCGGGCGTGACTT
CGGCGACGGTGACGGTATGGGCACGGATAAAATCACGCCGGGGATGCTCG
ACTCGCTCGCAGAGCGATCCATGCCGTTGTGCATGAAGCACCTTCACTCG
GCGTTGAATCGGGAGCATAAGCTCAAGCACTGGGGGCGACTCCAGTACGG
TCTTTTCCTTAAGGGTGCGGGCCTTGGCGTGGACGACGCGATGGCGTTCT
GGCAGCGATCCATGCCGTTGTGCATGAAGCACCTTCACTCGGCGTTGAAT
CGGGAGCATAAGCTCAAGCACTGGGGGCGACTCCAGTACGGTCTTTTCCT
TAAGGGTGCGGGCCTTGGCGTGGACGACGCGATGGCGTTCTGGCAGGGTA
TGTTCACGAAGATCATGGGACTCGACCAGTTCCAGAAACAATACGCGTAC
AACGTCCGGCACATGTACGGGAAGGAGGGCAAGCGCACCAACTACACCCC
TTACAGGCAAAAACATTTCGTTCATTCGGTATGTTCACGAAGATCATGGG
ACTCGACCAGTTCCAGAAACAATACGCGTACAACGTCCGGCACATGTACG
GGAAGGAGGGCAAGCGCACCAACTACACCCCTTACAGGCAAAAACATTTC
GTTCATTCTTGCCTCAAGATTATTATGGGGAACCCGCCGGGACCCGGCGA
TCACCACGGCTGCCCTTACCGCCACTTCGATGCCGATCACCTCGCCAACC
TTCTGTCCCAGTTGCCTCAAGATTATTATGGGGAACCCGCCGGGACCCGG
CGATCACCACGGCTGCCCTTACCGCCACTTCGATGCCGATCACCTCGCCA
ACCTTCTGTCCCAGGTACGCGTTGTGGGAGAAGACAAAAGCGCCATCTTG
CGATATGTCAAGCACAAAAGCTACCAGCTGGCTTGCCAGCGGCATTTCGA
GGCTACCCACAAGGGTCACGAGGCCGCGGGCATTAACACCGAGGGTGTCG
GGAATCACCCCAACGCGTGGATGCACGCCTCGATGGAGTTCCACAACGCA
AAGGTGGATTGCTACGTTTTTGTTTTTGTTTAAGTACGCGTTGTGGGAGA
AGACAAAAGCGCCATCTTGCGATATGTCAAGCACAAAAGCTACCAGCTGG
CTTGCCAGCGGCATTTCGAGGCTACCCACAAGGGTCACGAGGCCGCGGGC
ATTAACACCGAGGGTGTCGGGAATCACCCCAACGCGTGGATGCACGCCTC
GATGGAGTTCCACAACGCAAAGGTGGATTGCTACGTTTTTGTTTTTGTTT
AA
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