mRNA_H-elongata_contig55100.12915.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig55100.12915.1
Unique NamemRNA_H-elongata_contig55100.12915.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig55100.12915.1 vs. uniprot
Match: D8LIG9_ECTSI (Major facilitator transporter n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LIG9_ECTSI)

HSP 1 Score: 473 bits (1216), Expect = 7.800e-159
Identity = 283/450 (62.89%), Postives = 317/450 (70.44%), Query Frame = 1 
Query:    1 VPQEWQSSAFSQHSASWGCAYLAAPAVIAWAGDSADRILTLATVTMIISAAIVEMTFVDTRPEGHRTQRMSSVVGEYLIEGARDLAEV-----------GKKMSGVDLAEYFNAGKDRESSASA--------------NSLRPQS------VVNARQSGVGAKEGQLRHRNI-------IGNEKSSAVTGTNGHPVKANGHSLVKQRRSTVDNPRRNGVVDGVASTTSIVEANGGDRRRSREGR------MSGHALVGVFKGMMKQRLVLVTSVLQVIRPAQDLAPLVAQKLSGGASVLAGINSSRSLCRALVPMTPLIPSLVRLAGGSSGEGAAAKMRGDRLVAALMCVFMAGLVVGVPAVETLQDLHRLMFFNGLCYIVRDSTAGAVMARAAGTASVGAFFGWQHCIKGIQGTFSTFLTGWLSGHSVSLPYYVVAVCDLIYAFTYLFI 1218
            VP EWQSSAFSQHSASWGCAYLAAPA+IAWAGDSAD ILT+AT+TMIISAAIVE+TFVDTRPEG RTQRMS VV +YL+EGA +LAEV           GKK+SGV+LAEYFN G++R++ + +                LR  S      VV+    G G  EG LRHRN+       IG +  +   G  G      G  L     ++           GV     +  A G   + + EGR      MS  ALVGVFKGMMK+RLVLVT VLQ +RPAQDLAPLVA K SGGASVLAGI SSRSLCR LVPMTPLIP LVRLAGGSS  GAAAKM GDR VAA MCV MAGLV  VPAV TL++LH LM F GLCYIVR+STAGAVMARAAGTASVGAFFGWQHCIKGIQGTFS FLTGWLSG+S+SLPYYVV +CDL+YAFTYL+I
Sbjct:  264 VPPEWQSSAFSQHSASWGCAYLAAPALIAWAGDSADAILTVATMTMIISAAIVEITFVDTRPEGCRTQRMSRVVSDYLLEGASNLAEVAIEXXXXXXEVGKKVSGVNLAEYFNGGRERDTPSLSLPXXXXXXXXXXXXXGLRQSSGTAAGGVVDL--GGSGXXEG-LRHRNVGXXXXXXIGVDAQTNGFGGRGAADGGAGARLDVPVEASA----------GVCGVGELPAAGGAKGKGAGEGRKILAEGMSASALVGVFKGMMKERLVLVTFVLQAVRPAQDLAPLVALKFSGGASVLAGITSSRSLCRVLVPMTPLIPWLVRLAGGSSSAGAAAKMGGDRAVAAFMCVLMAGLVACVPAVGTLRELHHLMAFKGLCYIVRESTAGAVMARAAGTASVGAFFGWQHCIKGIQGTFSHFLTGWLSGYSISLPYYVVGICDLLYAFTYLYI 700
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BLAST of mRNA_H-elongata_contig55100.12915.1 vs. uniprot
Match: A0A835YM00_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YM00_9STRA)

HSP 1 Score: 158 bits (400), Expect = 4.660e-43
Identity = 91/195 (46.67%), Postives = 118/195 (60.51%), Query Frame = 1 
Query:  634 LVGVFKGMMKQRLVLVTSVLQVIRPAQDLAPLVAQKLSGGASVLAGINSSRSLCRALVPMTPLIPSL-VRLAGGSSGEGAAAKMRGDRLVAALMCVFMAGLVVGVPAVETLQDLHRLMFFNGLCYIVRDSTAGAVMARAAGTASVGAFFGWQHCIKGIQGTFSTFLTGWLSGHSVSLPYYVVAVCDLIYAFTYLF 1215
            +V VF+ M+++RLVL    LQVIRPAQDLAPLV  K   GA+ +A I S RS  R L+P+TP+IP L   L GG+        + GDR VAA+MCV MA L   VP    L  L  +M   GL  ++++ST  A+M+  A   +VGAFFGWQH +KG+ G  S  +TG L       PY+  A CDL+YA  Y+F
Sbjct:    1 MVRVFRSMLQERLVLCIFALQVIRPAQDLAPLVTSKFGAGAAFVASITSVRSTFRMLLPLTPVIPMLHAALGGGTRDPKTGEVVGGDRPVAAVMCVAMALLGALVPLCPNLVVLQVVMAAKGLANVIKESTVSAIMSSLASHGNVGAFFGWQHFMKGLAGVTSHMVTGLLVSRGPEHPYFATAACDLLYALIYVF 195
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig55100.12915.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LIG9_ECTSI7.800e-15962.89Major facilitator transporter n=2 Tax=Ectocarpus T... [more]
A0A835YM00_9STRA4.660e-4346.67Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig55100contigH-elongata_contig55100:320..1540 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score475.3
Seed ortholog evalue2.8e-131
Seed eggNOG ortholog2880.D8LIG9
EggNOG free text desc.Major Facilitator Superfamily
EggNOG OGs2F0J6@1,2T1Q9@2759
Ec32 ortholog descriptionMajor facilitator superfamily
Ec32 orthologEc-18_003710.1
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons1
Model size1221
Cds size1221
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930898.1802359-CDS-H-elongata_contig55100:319..15401622930898.1802359-CDS-H-elongata_contig55100:319..1540Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig55100 320..1540 -
1691679616.5242968-CDS-H-elongata_contig55100:319..15401691679616.5242968-CDS-H-elongata_contig55100:319..1540Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig55100 320..1540 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig55100.12915.1prot_H-elongata_contig55100.12915.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig55100 320..1540 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig55100.12915.1

>prot_H-elongata_contig55100.12915.1 ID=prot_H-elongata_contig55100.12915.1|Name=mRNA_H-elongata_contig55100.12915.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=407bp
VPQEWQSSAFSQHSASWGCAYLAAPAVIAWAGDSADRILTLATVTMIISA
AIVEMTFVDTRPEGHRTQRMSSVVGEYLIEGARDLAEVGKKMSGVDLAEY
FNAGKDRESSASANSLRPQSVVNARQSGVGAKEGQLRHRNIIGNEKSSAV
TGTNGHPVKANGHSLVKQRRSTVDNPRRNGVVDGVASTTSIVEANGGDRR
RSREGRMSGHALVGVFKGMMKQRLVLVTSVLQVIRPAQDLAPLVAQKLSG
GASVLAGINSSRSLCRALVPMTPLIPSLVRLAGGSSGEGAAAKMRGDRLV
AALMCVFMAGLVVGVPAVETLQDLHRLMFFNGLCYIVRDSTAGAVMARAA
GTASVGAFFGWQHCIKGIQGTFSTFLTGWLSGHSVSLPYYVVAVCDLIYA
FTYLFI*
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mRNA from alignment at H-elongata_contig55100:320..1540-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig55100.12915.1 ID=mRNA_H-elongata_contig55100.12915.1|Name=mRNA_H-elongata_contig55100.12915.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1221bp|location=Sequence derived from alignment at H-elongata_contig55100:320..1540- (Himanthalia elongata Himel1 dioecious)
GTGCCTCAGGAGTGGCAGTCCTCCGCGTTCTCTCAGCACTCGGCGTCGTG
GGGCTGCGCGTACCTCGCGGCGCCCGCCGTGATCGCGTGGGCGGGAGACA
GCGCGGATCGAATCCTCACGCTTGCCACGGTGACCATGATCATATCGGCC
GCGATCGTCGAGATGACGTTCGTCGACACTCGTCCCGAGGGCCACCGCAC
GCAGCGGATGAGCAGCGTCGTCGGTGAGTACCTCATCGAGGGGGCTAGAG
ACCTGGCGGAAGTTGGAAAGAAGATGAGCGGGGTCGATCTCGCGGAATAT
TTCAACGCGGGGAAAGATAGAGAGTCATCAGCTTCCGCGAATTCTCTAAG
ACCGCAATCAGTGGTCAATGCGCGTCAGAGCGGCGTTGGTGCGAAGGAGG
GGCAGCTTCGCCATCGAAACATAATTGGCAACGAAAAATCATCCGCGGTA
ACGGGCACGAATGGACACCCGGTCAAAGCGAATGGGCACTCTTTAGTGAA
ACAACGAAGGAGCACGGTCGATAACCCGCGGCGAAACGGGGTGGTGGACG
GAGTTGCATCAACGACGAGTATCGTGGAGGCGAACGGCGGGGATCGGAGG
CGGTCACGGGAGGGAAGAATGTCAGGCCACGCGCTGGTGGGCGTCTTCAA
GGGTATGATGAAGCAGCGGTTGGTGCTTGTGACGTCCGTGTTGCAGGTAA
TCCGACCGGCGCAGGATCTGGCGCCCCTGGTCGCGCAGAAGTTATCCGGT
GGTGCTTCTGTGCTGGCGGGGATCAACAGCTCTCGATCGCTCTGCAGGGC
GCTGGTCCCGATGACCCCGCTGATCCCATCGCTCGTGAGGCTGGCGGGAG
GATCCTCGGGCGAAGGCGCGGCGGCGAAGATGCGGGGAGACCGCCTGGTA
GCGGCCTTGATGTGCGTCTTCATGGCGGGGCTTGTGGTCGGAGTTCCCGC
GGTGGAAACGCTCCAAGACCTTCACCGCTTGATGTTCTTCAACGGGCTCT
GCTACATCGTGCGGGATTCCACGGCGGGCGCTGTGATGGCCCGGGCGGCG
GGGACCGCGAGCGTTGGGGCGTTCTTCGGGTGGCAGCACTGCATCAAGGG
GATCCAGGGAACCTTCTCTACCTTTCTGACGGGTTGGCTCTCGGGGCACT
CTGTGTCTCTTCCGTATTACGTGGTAGCCGTATGTGACTTGATATACGCC
TTCACGTATCTTTTCATCTAG
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Coding sequence (CDS) from alignment at H-elongata_contig55100:320..1540-

>mRNA_H-elongata_contig55100.12915.1 ID=mRNA_H-elongata_contig55100.12915.1|Name=mRNA_H-elongata_contig55100.12915.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=2442bp|location=Sequence derived from alignment at H-elongata_contig55100:320..1540- (Himanthalia elongata Himel1 dioecious)
GTGCCTCAGGAGTGGCAGTCCTCCGCGTTCTCTCAGCACTCGGCGTCGTG
GGGCTGCGCGTACCTCGCGGCGCCCGCCGTGATCGCGTGGGCGGGAGACA
GCGCGGATCGAATCCTCACGCTTGCCACGGTGACCATGATCATATCGGCC
GCGATCGTCGAGATGACGTTCGTCGACACTCGTCCCGAGGGCCACCGCAC
GCAGCGGATGAGCAGCGTCGTCGGTGAGTACCTCATCGAGGGGGCTAGAG
ACCTGGCGGAAGTTGGAAAGAAGATGAGCGGGGTCGATCTCGCGGAATAT
TTCAACGCGGGGAAAGATAGAGAGTCATCAGCTTCCGCGAATTCTCTAAG
ACCGCAATCAGTGGTCAATGCGCGTCAGAGCGGCGTTGGTGCGAAGGAGG
GGCAGCTTCGCCATCGAAACATAATTGGCAACGAAAAATCATCCGCGGTA
ACGGGCACGAATGGACACCCGGTCAAAGCGAATGGGCACTCTTTAGTGAA
ACAACGAAGGAGCACGGTCGATAACCCGCGGCGAAACGGGGTGGTGGACG
GAGTTGCATCAACGACGAGTATCGTGGAGGCGAACGGCGGGGATCGGAGG
CGGTCACGGGAGGGAAGAATGTCAGGCCACGCGCTGGTGGGCGTCTTCAA
GGGTATGATGAAGCAGCGGTTGGTGCTTGTGACGTCCGTGTTGCAGGTAA
TCCGACCGGCGCAGGATCTGGCGCCCCTGGTCGCGCAGAAGTTATCCGGT
GGTGCTTCTGTGCTGGCGGGGATCAACAGCTCTCGATCGCTCTGCAGGGC
GCTGGTCCCGATGACCCCGCTGATCCCATCGCTCGTGAGGCTGGCGGGAG
GATCCTCGGGCGAAGGCGCGGCGGCGAAGATGCGGGGAGACCGCCTGGTA
GCGGCCTTGATGTGCGTCTTCATGGCGGGGCTTGTGGTCGGAGTTCCCGC
GGTGGAAACGCTCCAAGACCTTCACCGCTTGATGTTCTTCAACGGGCTCT
GCTACATCGTGCGGGATTCCACGGCGGGCGCTGTGATGGCCCGGGCGGCG
GGGACCGCGAGCGTTGGGGCGTTCTTCGGGTGGCAGCACTGCATCAAGGG
GATCCAGGGAACCTTCTCTACCTTTCTGACGGGTTGGCTCTCGGGGCACT
CTGTGTCTCTTCCGTATTACGTGGTAGCCGTATGTGACTTGATATACGCC
TTCACGTATCTTTTCATCTAGGTGCCTCAGGAGTGGCAGTCCTCCGCGTT
CTCTCAGCACTCGGCGTCGTGGGGCTGCGCGTACCTCGCGGCGCCCGCCG
TGATCGCGTGGGCGGGAGACAGCGCGGATCGAATCCTCACGCTTGCCACG
GTGACCATGATCATATCGGCCGCGATCGTCGAGATGACGTTCGTCGACAC
TCGTCCCGAGGGCCACCGCACGCAGCGGATGAGCAGCGTCGTCGGTGAGT
ACCTCATCGAGGGGGCTAGAGACCTGGCGGAAGTTGGAAAGAAGATGAGC
GGGGTCGATCTCGCGGAATATTTCAACGCGGGGAAAGATAGAGAGTCATC
AGCTTCCGCGAATTCTCTAAGACCGCAATCAGTGGTCAATGCGCGTCAGA
GCGGCGTTGGTGCGAAGGAGGGGCAGCTTCGCCATCGAAACATAATTGGC
AACGAAAAATCATCCGCGGTAACGGGCACGAATGGACACCCGGTCAAAGC
GAATGGGCACTCTTTAGTGAAACAACGAAGGAGCACGGTCGATAACCCGC
GGCGAAACGGGGTGGTGGACGGAGTTGCATCAACGACGAGTATCGTGGAG
GCGAACGGCGGGGATCGGAGGCGGTCACGGGAGGGAAGAATGTCAGGCCA
CGCGCTGGTGGGCGTCTTCAAGGGTATGATGAAGCAGCGGTTGGTGCTTG
TGACGTCCGTGTTGCAGGTAATCCGACCGGCGCAGGATCTGGCGCCCCTG
GTCGCGCAGAAGTTATCCGGTGGTGCTTCTGTGCTGGCGGGGATCAACAG
CTCTCGATCGCTCTGCAGGGCGCTGGTCCCGATGACCCCGCTGATCCCAT
CGCTCGTGAGGCTGGCGGGAGGATCCTCGGGCGAAGGCGCGGCGGCGAAG
ATGCGGGGAGACCGCCTGGTAGCGGCCTTGATGTGCGTCTTCATGGCGGG
GCTTGTGGTCGGAGTTCCCGCGGTGGAAACGCTCCAAGACCTTCACCGCT
TGATGTTCTTCAACGGGCTCTGCTACATCGTGCGGGATTCCACGGCGGGC
GCTGTGATGGCCCGGGCGGCGGGGACCGCGAGCGTTGGGGCGTTCTTCGG
GTGGCAGCACTGCATCAAGGGGATCCAGGGAACCTTCTCTACCTTTCTGA
CGGGTTGGCTCTCGGGGCACTCTGTGTCTCTTCCGTATTACGTGGTAGCC
GTATGTGACTTGATATACGCCTTCACGTATCTTTTCATCTAG
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