mRNA_H-elongata_contig55095.12914.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig55095.12914.1
Unique NamemRNA_H-elongata_contig55095.12914.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig55095.12914.1 vs. uniprot
Match: A0A6H5L0G6_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L0G6_9PHAE)

HSP 1 Score: 62.4 bits (150), Expect = 7.380e-10
Identity = 29/80 (36.25%), Postives = 46/80 (57.50%), Query Frame = 1 
Query:    1 YLGSTISSVRDFGPEIKRRTGYAWNCFLKYSRVVYDNPYIAVENQVRFLKAEVLGVMIYGCVTWNLSHSDFDKLPKAQRE 240
            YLG TIS+      EI  R+  AW C+ + S  +YD      + ++RFL+AEV+  ++YGC +W+L+   + KL    R+
Sbjct:  100 YLGRTISADGKADREITSRSCRAWKCYRRNSASMYDRRRANRQLKIRFLQAEVVETLLYGCASWSLTAEHYTKLNGTHRQ 179
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig55095.12914.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5L0G6_9PHAE7.380e-1036.25Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig55095contigH-elongata_contig55095:3..245 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size243
Cds size243
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930898.1187167-CDS-H-elongata_contig55095:2..2451622930898.1187167-CDS-H-elongata_contig55095:2..245Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig55095 3..245 +
1691679616.5150495-CDS-H-elongata_contig55095:2..2451691679616.5150495-CDS-H-elongata_contig55095:2..245Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig55095 3..245 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig55095.12914.1prot_H-elongata_contig55095.12914.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig55095 3..245 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig55095.12914.1

>prot_H-elongata_contig55095.12914.1 ID=prot_H-elongata_contig55095.12914.1|Name=mRNA_H-elongata_contig55095.12914.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=81bp
YLGSTISSVRDFGPEIKRRTGYAWNCFLKYSRVVYDNPYIAVENQVRFLK
AEVLGVMIYGCVTWNLSHSDFDKLPKAQREM
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mRNA from alignment at H-elongata_contig55095:3..245+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig55095.12914.1 ID=mRNA_H-elongata_contig55095.12914.1|Name=mRNA_H-elongata_contig55095.12914.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=243bp|location=Sequence derived from alignment at H-elongata_contig55095:3..245+ (Himanthalia elongata Himel1 dioecious)
TATCTTGGCAGCACCATCAGCAGCGTCAGGGACTTCGGCCCTGAGATCAA
ACGTCGTACTGGCTACGCCTGGAACTGCTTCCTAAAGTACAGTAGGGTGG
TGTATGACAACCCATACATCGCAGTAGAAAACCAGGTCCGTTTCCTGAAG
GCGGAAGTACTCGGGGTCATGATCTACGGCTGTGTGACCTGGAATCTTTC
ACACAGCGACTTCGACAAGCTGCCGAAAGCCCAACGCGAAATG
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Coding sequence (CDS) from alignment at H-elongata_contig55095:3..245+

>mRNA_H-elongata_contig55095.12914.1 ID=mRNA_H-elongata_contig55095.12914.1|Name=mRNA_H-elongata_contig55095.12914.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=486bp|location=Sequence derived from alignment at H-elongata_contig55095:3..245+ (Himanthalia elongata Himel1 dioecious)
TATCTTGGCAGCACCATCAGCAGCGTCAGGGACTTCGGCCCTGAGATCAA
ACGTCGTACTGGCTACGCCTGGAACTGCTTCCTAAAGTACAGTAGGGTGG
TGTATGACAACCCATACATCGCAGTAGAAAACCAGGTCCGTTTCCTGAAG
GCGGAAGTACTCGGGGTCATGATCTACGGCTGTGTGACCTGGAATCTTTC
ACACAGCGACTTCGACAAGCTGCCGAAAGCCCAACGCGAAATGTATCTTG
GCAGCACCATCAGCAGCGTCAGGGACTTCGGCCCTGAGATCAAACGTCGT
ACTGGCTACGCCTGGAACTGCTTCCTAAAGTACAGTAGGGTGGTGTATGA
CAACCCATACATCGCAGTAGAAAACCAGGTCCGTTTCCTGAAGGCGGAAG
TACTCGGGGTCATGATCTACGGCTGTGTGACCTGGAATCTTTCACACAGC
GACTTCGACAAGCTGCCGAAAGCCCAACGCGAAATG
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