mRNA_H-elongata_contig55075.12909.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig55075.12909.1 vs. uniprot
Match: D7FRR8_ECTSI (Mannuronan C-5-epimerase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FRR8_ECTSI) HSP 1 Score: 218 bits (554), Expect = 2.180e-66 Identity = 108/165 (65.45%), Postives = 126/165 (76.36%), Query Frame = 1
Query: 1 MHDNHQYGFDPHDDSDYLTIANNEVYNNVNHGIIASKRCNDLKIYKNEVYNGGANAAGIFLHRSSDSCEVYDNVVYDMQDAGMAIMESFDADIHDNTFTNVKYGIRISLGGGNNMVYDNVFDECSKYGLYTYQGSDTPDASSDGRPSDNSFYDNTISNTETGVKI 495
MHDNHQYGFDPHDDSDYL IA N+VYNNVNHGIIASKRCN++KIY NEVY+GGA+AAGIFLHRS D EVY N + +M DAG+A++E+ DIHDN ++GIR+ LG NN V+DNVF G++TY GSD P GRP DN FY+NTI TETGVKI
Sbjct: 225 MHDNHQYGFDPHDDSDYLIIAGNKVYNNVNHGIIASKRCNNVKIYDNEVYDGGADAAGIFLHRSGDDSEVYGNTITNMGDAGIAMLETSGCDIHDNQVDGGEFGIRVHLGSSNNKVHDNVFKNIWNVGMFTYVGSDEPWVGG-GRPCDNEFYNNTIQATETGVKI 388
BLAST of mRNA_H-elongata_contig55075.12909.1 vs. uniprot
Match: D7G8D9_ECTSI (Mannuronan C-5-epimerase n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G8D9_ECTSI) HSP 1 Score: 221 bits (563), Expect = 5.480e-66 Identity = 109/157 (69.43%), Postives = 132/157 (84.08%), Query Frame = 1
Query: 1 MHDNHQYGFDPHDDSDYLTIANNEVYNNVNHGIIASKRCNDLKIYKNEVYNGGANAAGIFLHRSSDSCEVYDNVVYDMQDAGMAIMESFDADIHDNTFTNVKYGIRISLGGGNNMVYDNVFDECSKYGLYTYQGSDTPDA-SSDGRPSDNSFYDNTI 468
M DN QYGFDPHDDSD LTI+NN VY N NHGIIASKRCN++KI+ NEVY+GG +A GIFLHRSSD EV+DNVVY+MQDAGMA+MES+DA+I+DN+FTN +YGIR+SLG G N++ +N+F ++YGLYTY GSD PD +S+GRPSDN F NTI
Sbjct: 413 MRDNIQYGFDPHDDSDDLTISNNIVYGNGNHGIIASKRCNNVKIFNNEVYDGGEDAVGIFLHRSSDGAEVHDNVVYNMQDAGMAMMESYDANIYDNSFTNCRYGIRLSLGSGRNIITNNLFSGITQYGLYTYMGSDDPDVPNSNGRPSDNVFDGNTI 569
BLAST of mRNA_H-elongata_contig55075.12909.1 vs. uniprot
Match: D8LC73_ECTSI (Mannuronan C-5-epimerase 4 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LC73_ECTSI) HSP 1 Score: 222 bits (566), Expect = 6.640e-65 Identity = 112/165 (67.88%), Postives = 130/165 (78.79%), Query Frame = 1
Query: 1 MHDNHQYGFDPHDDSDYLTIANNEVYNNVNHGIIASKRCNDLKIYKNEVYNGGANAAGIFLHRSSDSCEVYDNVVYDMQDAGMAIMESFDADIHDNTFTNVKYGIRISLGGGNNMVYDNVFDECSKYGLYTYQGSDTPDASSDGRPSDNSFYDNTISNTETGVKI 495
MHDN QYGFDPHDDSDYLTIA NEVYNNVNHGIIASKRCN++KI++NEV +GGA AAGIFLHRSSD V+DN + +MQDAG+A++ESFDA I+ N KYGIR+SLG GNN VY N F + S+YGLYTY+GSD PD S DGRPS N N + + GVKI
Sbjct: 665 MHDNWQYGFDPHDDSDYLTIAYNEVYNNVNHGIIASKRCNNVKIFENEVRDGGAAAAGIFLHRSSDGAAVFDNTITNMQDAGIAMLESFDAQIYGNIINGAKYGIRMSLGSGNNEVYQNSFTDISQYGLYTYEGSDEPDVS-DGRPSGNVLALNLVEDCPIGVKI 828
BLAST of mRNA_H-elongata_contig55075.12909.1 vs. uniprot
Match: D8LDB5_ECTSI (Mannuronan C-5-epimerase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LDB5_ECTSI) HSP 1 Score: 219 bits (557), Expect = 1.500e-63 Identity = 111/167 (66.47%), Postives = 131/167 (78.44%), Query Frame = 1
Query: 1 MHDNHQYGFDPHDDSDYLTIANNEVYNNVNHGIIASKRCNDLKIYKNEVYNGGANAAGIFLHRSSDSCEVYDNVVYDMQDAGMAIMESFDADIHDNTFTNVKYGIRISLGGGNNMVYDNVFDECSKYGLYTYQGSDTPDASSD--GRPSDNSFYDNTISNTETGVKI 495
MHDN QYGFDPHDDSD L IA N V+ N NHGIIASKRCN++KI+ N VY+GG A GIFLHRSSD CEV++N VYDM+DAGMAIMES A I+DNTFTNVKYGIR+S+G N+V +N F EC +YG+YTYQG+D P+AS D G DN+F+ NT+ E GVKI
Sbjct: 681 MHDNAQYGFDPHDDSDNLEIAYNTVWGNGNHGIIASKRCNNVKIHHNTVYDGGEGAVGIFLHRSSDDCEVWENTVYDMEDAGMAIMESMGAHIYDNTFTNVKYGIRLSVGASRNVVENNKFSECDQYGIYTYQGNDEPEASKDWDGLLVDNTFHANTV---EGGVKI 844
BLAST of mRNA_H-elongata_contig55075.12909.1 vs. uniprot
Match: A0A6H5JNF5_9PHAE (MEP13 protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JNF5_9PHAE) HSP 1 Score: 218 bits (555), Expect = 1.630e-63 Identity = 112/167 (67.07%), Postives = 130/167 (77.84%), Query Frame = 1
Query: 1 MHDNHQYGFDPHDDSDYLTIANNEVYNNVNHGIIASKRCNDLKIYKNEVYNGGANAAGIFLHRSSDSCEVYDNVVYDMQDAGMAIMESFDADIHDNTFTNVKYGIRISLGGGNNMVYDNVFDECSKYGLYTYQGSDTPDASSD--GRPSDNSFYDNTISNTETGVKI 495
MHDN QYGFDPHDDSD L IA N V+ N NHGIIASKRCN++KI+ N VY+GG A GIFLHRSSD CEV+ N VYDM+DAGMAIMES A IHDNTFTNVKYGIR+S+G N+V +N F EC +YG+YTYQG+D P+AS D G DN+F+ NT+ E GVKI
Sbjct: 620 MHDNAQYGFDPHDDSDNLEIAYNTVWGNGNHGIIASKRCNNVKIHHNTVYDGGEGAVGIFLHRSSDDCEVWGNTVYDMKDAGMAIMESMGAHIHDNTFTNVKYGIRLSVGAARNIVENNSFLECDQYGIYTYQGNDKPEASKDWDGLLVDNTFHANTV---EGGVKI 783
BLAST of mRNA_H-elongata_contig55075.12909.1 vs. uniprot
Match: D8LRM4_ECTSI (Mannuronan C-5-epimerase N-terminal n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LRM4_ECTSI) HSP 1 Score: 203 bits (517), Expect = 3.960e-60 Identity = 106/166 (63.86%), Postives = 127/166 (76.51%), Query Frame = 1
Query: 1 MHDNHQYGFDPHDDSDYLTIANNEVYNNVNHGIIASKRCNDLKIYKNEVYNGGANAAGIFLHRSSDSCEVYDNVVYDMQDAGMAIMESFDADIHDNTFTNVKYGIRISLGGGNNMVYDNVFDECSKYGLYTYQGSDTP-DASSDGRPSDNSFYDNTISNTETGVKI 495
MHDNHQYGFDPHDDSDYLT IIASKRCN+++IY NEVY+GG AAGIFLHRSSD V+DNVV+DMQDAGMA++ES +ADI++N F++VK+GIR+SLG N V++N+F++ S GLYTYQGSD P D SDGRPSDN F +N I N GVKI
Sbjct: 302 MHDNHQYGFDPHDDSDYLT------------SIIASKRCNNVQIYNNEVYDGGPFAAGIFLHRSSDYAIVHDNVVHDMQDAGMAMLESMNADIYNNRFSSVKFGIRLSLGSSENHVHENLFEDVSTQGLYTYQGSDEPTDGVSDGRPSDNLFENNRILNVTKGVKI 455
BLAST of mRNA_H-elongata_contig55075.12909.1 vs. uniprot
Match: A0A6H5JGU8_9PHAE (MEP1 protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JGU8_9PHAE) HSP 1 Score: 197 bits (500), Expect = 3.790e-58 Identity = 97/165 (58.79%), Postives = 125/165 (75.76%), Query Frame = 1
Query: 1 MHDNHQYGFDPHDDSDYLTIANNEVYNNVNHGIIASKRCNDLKIYKNEVYNGGANAAGIFLHRSSDSCEVYDNVVYDMQDAGMAIMESFDADIHDNTFTNVKYGIRISLGGGNNMVYDNVFDECSKYGLYTYQGSDTPDASSDGRPSDNSFYDNTISNTETGVKI 495
MHDNHQY +ANN+VYNN NHGIIASKRCN++KIY N+V +GG +A GIFLHRSSD+ EVY N +++M DAG+A++ESF+ADIHDN V++GIR+SLG G N VYDN F++CS +GLYTY GSD PD S+ GRP+ N+F +N ++N+ GVK
Sbjct: 247 MHDNHQY------------VANNKVYNNYNHGIIASKRCNNVKIYDNQVSDGGPDAVGIFLHRSSDNAEVYGNKIWNMPDAGIALLESFNADIHDNEIDGVQFGIRMSLGSGGNSVYDNEFNDCSDWGLYTYMGSDEPDVSN-GRPNGNTFNNNKVTNSAGGVKF 398
BLAST of mRNA_H-elongata_contig55075.12909.1 vs. uniprot
Match: Q7XAK0_9PHAE (Mannuronan C-5-epimerase (Fragment) n=1 Tax=Laminaria digitata TaxID=80365 RepID=Q7XAK0_9PHAE) HSP 1 Score: 182 bits (462), Expect = 1.140e-54 Identity = 91/156 (58.33%), Postives = 112/156 (71.79%), Query Frame = 1
Query: 1 MHDNHQYGFDPHDDSDYLTIANNEVYNNVNHGIIASKRCNDLKIYKNEVYNGGANAAGIFLHRSSDSCEVYDNVVYDMQDAGMAIMESFDADIHDNTFTNVKYGIRISLGGGNNMVYDNVFDECSKYGLYTYQGSDTPDASSDGRPSDNSFYDNTI 468
MHDN YGFDPHDDSD+LT+ +NEVY+N HGIIASKRCN + I NEVY G +++AGIFL+RSSD V N V+D DAG+A+MESF+AD+ DN F N KYG+RIS+G G N+ NV +KY Y+Y G+D PD GR DN F +NTI
Sbjct: 42 MHDNKGYGFDPHDDSDFLTVHDNEVYDNGYHGIIASKRCNGVSIQGNEVYGGASSSAGIFLYRSSDDAVVKGNYVHDNGDAGLAMMESFNADVSDNIFENNKYGVRISVGCGRNIFSKNVISGSTKYNAYSYLGTDAPDVVKSGRSKDNCFQENTI 197
BLAST of mRNA_H-elongata_contig55075.12909.1 vs. uniprot
Match: D7FXE4_ECTSI (Mannuronan C-5-epimerase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FXE4_ECTSI) HSP 1 Score: 188 bits (477), Expect = 2.550e-54 Identity = 95/165 (57.58%), Postives = 116/165 (70.30%), Query Frame = 1
Query: 1 MHDNHQYGFDPHDDSDYLTIANNEVYNNVNHGIIASKRCNDLKIYKNEVYNGGANAAGIFLHRSSDSCEVYDNVVYDMQDAGMAIMESFDADIHDNTFTNVKYGIRISLGGGNNMVYDNVFDECSKYGLYTYQGSDTPDASSDGRPSDNSFYDNTISNTETGVKI 495
MHDN YGFDPHDDSD+LTI +NEVYNN HGIIASKRCN + I NEVY G +AGIFLHRSSD V N V+D DAG+A++ESF+AD+ +NTF N KYG+R+S+G +N+ +N+ SKY YTY GSD PD S GR +N F N+ S E +KI
Sbjct: 282 MHDNSGYGFDPHDDSDFLTIHDNEVYNNGYHGIIASKRCNGVSIQGNEVYGGAETSAGIFLHRSSDDAIVKGNYVHDNGDAGLAMLESFNADVSENTFENNKYGVRMSVGCADNVFSENIISNNSKYNAYTYLGSDEPDVVSSGRSQNNVFSQNSFSGAEETIKI 446
BLAST of mRNA_H-elongata_contig55075.12909.1 vs. uniprot
Match: D7G339_ECTSI (Mannuronan C-5-epimerase n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G339_ECTSI) HSP 1 Score: 181 bits (458), Expect = 1.480e-51 Identity = 91/165 (55.15%), Postives = 114/165 (69.09%), Query Frame = 1
Query: 1 MHDNHQYGFDPHDDSDYLTIANNEVYNNVNHGIIASKRCNDLKIYKNEVYNGGANAAGIFLHRSSDSCEVYDNVVYDMQDAGMAIMESFDADIHDNTFTNVKYGIRISLGGGNNMVYDNVFDECSKYGLYTYQGSDTPDASSDGRPSDNSFYDNTISNTETGVKI 495
MHDN YGFDPHDDSD+LTI +NEVYNN HGIIASKRCN + I NEVY G +AGIFLHRSSD V N V+D DAG+A++ESF+AD+ +NTF N KYG+R S+G +N+ +N ++Y Y+Y G+D PD S GR +N F N+ S E +KI
Sbjct: 278 MHDNSGYGFDPHDDSDFLTIHDNEVYNNGYHGIIASKRCNGVSIQGNEVYGGAETSAGIFLHRSSDDAIVKGNYVHDNGDAGLAMLESFNADVSENTFENNKYGVRFSVGCADNVFSNNTISNNAEYNAYSYLGTDEPDVVSSGRSQNNVFSQNSFSGAEETIKI 442 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig55075.12909.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig55075.12909.1 >prot_H-elongata_contig55075.12909.1 ID=prot_H-elongata_contig55075.12909.1|Name=mRNA_H-elongata_contig55075.12909.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=165bp MHDNHQYGFDPHDDSDYLTIANNEVYNNVNHGIIASKRCNDLKIYKNEVYback to top mRNA from alignment at H-elongata_contig55075:130..1054+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig55075.12909.1 ID=mRNA_H-elongata_contig55075.12909.1|Name=mRNA_H-elongata_contig55075.12909.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=925bp|location=Sequence derived from alignment at H-elongata_contig55075:130..1054+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig55075:130..1054+ >mRNA_H-elongata_contig55075.12909.1 ID=mRNA_H-elongata_contig55075.12909.1|Name=mRNA_H-elongata_contig55075.12909.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=990bp|location=Sequence derived from alignment at H-elongata_contig55075:130..1054+ (Himanthalia elongata Himel1 dioecious)back to top |