mRNA_H-elongata_contig55019.12906.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig55019.12906.1
Unique NamemRNA_H-elongata_contig55019.12906.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig55019.12906.1 vs. uniprot
Match: D8LRH7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LRH7_ECTSI)

HSP 1 Score: 68.2 bits (165), Expect = 2.370e-11
Identity = 31/74 (41.89%), Postives = 46/74 (62.16%), Query Frame = 1 
Query:    1 AISTIGSGGLDWTTQRIGQVTFTSGVFVLIFEIVTVPCITAKLGIKWSQRLGTLFETPAYVSIPMLAWFMGTGL 222
            A+ST+ SGGLDWTT++IGQV    GV +L F++V  P ++ ++G+  SQR       P Y   P L+   G+G+
Sbjct:  492 ALSTVASGGLDWTTKQIGQVLSLVGVGMLAFQLVVYPWLSKRIGVTRSQRWACFLAIPVYAFFPFLSRLRGSGV 565
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BLAST of mRNA_H-elongata_contig55019.12906.1 vs. uniprot
Match: D8LRH9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LRH9_ECTSI)

HSP 1 Score: 63.9 bits (154), Expect = 7.280e-10
Identity = 31/93 (33.33%), Postives = 54/93 (58.06%), Query Frame = 1 
Query:    1 AISTIGSGGLDWTTQRIGQVTFTSGVFVLIFEIVTVPCITAKLGIKWSQRLGTLFETPAYVSIPMLAWFMGTGLEDFACA-ILIFTICACSNS 276
            A+ST+ SGGLDW++++IGQ     G+F+L F+++  P ++ ++G   SQR       P ++  P L+   GT     A + +L+F   A +N+
Sbjct:  449 ALSTVASGGLDWSSKQIGQALSVCGIFMLFFQLLVYPRLSKRIGATRSQRWACFLSIPVFLVFPTLSHLRGTERTLVAASLVLLFLTNAVANT 541
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig55019.12906.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LRH7_ECTSI2.370e-1141.89Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D8LRH9_ECTSI7.280e-1033.33Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig55019contigH-elongata_contig55019:978..1404 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score67.0
Seed ortholog evalue5.2e-09
Seed eggNOG ortholog2880.D8LRH7
EggNOG free text desc.major facilitator superfamily
EggNOG OGsKOG2615@1,KOG2615@2759
COG Functional cat.I
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons2
Model size276
Cds size276
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930897.0375755-CDS-H-elongata_contig55019:977..11961622930897.0375755-CDS-H-elongata_contig55019:977..1196Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig55019 978..1196 -
1691679616.0834758-CDS-H-elongata_contig55019:977..11961691679616.0834758-CDS-H-elongata_contig55019:977..1196Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig55019 978..1196 -
1622930897.051047-CDS-H-elongata_contig55019:1347..14041622930897.051047-CDS-H-elongata_contig55019:1347..1404Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig55019 1348..1404 -
1691679616.0974214-CDS-H-elongata_contig55019:1347..14041691679616.0974214-CDS-H-elongata_contig55019:1347..1404Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig55019 1348..1404 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig55019.12906.1prot_H-elongata_contig55019.12906.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig55019 978..1404 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig55019.12906.1

>prot_H-elongata_contig55019.12906.1 ID=prot_H-elongata_contig55019.12906.1|Name=mRNA_H-elongata_contig55019.12906.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=92bp
AISTIGSGGLDWTTQRIGQVTFTSGVFVLIFEIVTVPCITAKLGIKWSQR
LGTLFETPAYVSIPMLAWFMGTGLEDFACAILIFTICACSNS
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mRNA from alignment at H-elongata_contig55019:978..1404-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig55019.12906.1 ID=mRNA_H-elongata_contig55019.12906.1|Name=mRNA_H-elongata_contig55019.12906.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=427bp|location=Sequence derived from alignment at H-elongata_contig55019:978..1404- (Himanthalia elongata Himel1 dioecious)
GCGATCAGTACCATTGGGAGTGGGGGACTGGACTGGACTACGCAACGGAT
TGGACAGGTGGGGGGAGACTGCGCTTTCAATAAAAGAAGTACAACTAGTC
TTTCTATGTCCTACCATAACTCGGGTTGGTGATAAATGAGCCCCTCGATT
CCACGCTACTCGCGTCTTTCCGACTTTGTCTCTCTATATTCACGTCTATT
CAACACAGGTCACCTTTACTTCAGGTGTCTTCGTTTTAATTTTTGAGATC
GTCACGGTGCCCTGCATCACAGCGAAGCTTGGTATAAAGTGGTCTCAGCG
ATTGGGTACGCTTTTTGAAACGCCGGCATATGTCTCAATCCCGATGCTTG
CTTGGTTTATGGGGACGGGCCTCGAAGACTTCGCTTGTGCCATTCTGATC
TTCACCATATGTGCCTGCTCTAACTCG
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Coding sequence (CDS) from alignment at H-elongata_contig55019:978..1404-

>mRNA_H-elongata_contig55019.12906.1 ID=mRNA_H-elongata_contig55019.12906.1|Name=mRNA_H-elongata_contig55019.12906.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=552bp|location=Sequence derived from alignment at H-elongata_contig55019:978..1404- (Himanthalia elongata Himel1 dioecious)
GCGATCAGTACCATTGGGAGTGGGGGACTGGACTGGACTACGCAACGGAT
TGGACAGGCGATCAGTACCATTGGGAGTGGGGGACTGGACTGGACTACGC
AACGGATTGGACAGGTCACCTTTACTTCAGGTGTCTTCGTTTTAATTTTT
GAGATCGTCACGGTGCCCTGCATCACAGCGAAGCTTGGTATAAAGTGGTC
TCAGCGATTGGGTACGCTTTTTGAAACGCCGGCATATGTCTCAATCCCGA
TGCTTGCTTGGTTTATGGGGACGGGCCTCGAAGACTTCGCTTGTGCCATT
CTGATCTTCACCATATGTGCCTGCTCTAACTCGGTCACCTTTACTTCAGG
TGTCTTCGTTTTAATTTTTGAGATCGTCACGGTGCCCTGCATCACAGCGA
AGCTTGGTATAAAGTGGTCTCAGCGATTGGGTACGCTTTTTGAAACGCCG
GCATATGTCTCAATCCCGATGCTTGCTTGGTTTATGGGGACGGGCCTCGA
AGACTTCGCTTGTGCCATTCTGATCTTCACCATATGTGCCTGCTCTAACT
CG
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