mRNA_H-elongata_contig5500.12905.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig5500.12905.1
Unique NamemRNA_H-elongata_contig5500.12905.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig5500.12905.1 vs. uniprot
Match: A0A6H5KGF6_9PHAE (Uncharacterized protein n=4 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KGF6_9PHAE)

HSP 1 Score: 117 bits (293), Expect = 4.260e-30
Identity = 59/136 (43.38%), Postives = 82/136 (60.29%), Query Frame = 1
Query:    1 KAVVLETILYGRVTWSPRASHDCTLRRAHHSFLTRCIGWRKNNRTDHPISYLDTLMKTG-SENIEAIMRRMRIMFAGFVARMNDTRLPTCVVFGEIIGGAGRVGEQEKEWMGCLLGDVKVFGINADQ----WRLAA 393
            +A V+ET+LYG  +WS  A H   L   H  FLTRCIGW K  R+D P+SY   L++ G  E IEA +R+ R+ FAGFV RM D+RLP  ++ G + GG G  G QE +W+  L  D+  F +  ++    W+ +A
Sbjct:   17 QAEVVETLLYGCASWSLTAEHYTKLNGTHRQFLTRCIGWSKRKRSDRPLSYAQALIQAGCEETIEATVRKRRLCFAGFVMRMEDSRLPKHMLLGAMAGGVGYRGGQESDWVSRLGEDLVAFNMGDEKEGGKWKESA 152          
BLAST of mRNA_H-elongata_contig5500.12905.1 vs. uniprot
Match: A0A6H5J747_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J747_9PHAE)

HSP 1 Score: 111 bits (277), Expect = 6.190e-29
Identity = 54/107 (50.47%), Postives = 69/107 (64.49%), Query Frame = 1
Query:    1 KAVVLETILYGRVTWSPRASHDCTLRRAHHSFLTRCIGWRKNNRTDHPISYLDTLMKTG-SENIEAIMRRMRIMFAGFVARMNDTRLPTCVVFGEIIGGAGRVGEQE 318
            +A V+ET+LYG  +WSP A H   L   H  FLTRCIGW K  R+D P+SY   L++ G  E IEA +R+ R+ FAGFV RM D+RLP  ++ G + GG G  G QE
Sbjct:   17 QAEVVETLLYGCASWSPTAEHYTKLNETHRQFLTRCIGWSKRKRSDRPLSYAQALIQAGCEETIEATVRKRRLCFAGFVMRMEDSRLPKRMLLGAMAGGVGYRGGQE 123          
BLAST of mRNA_H-elongata_contig5500.12905.1 vs. uniprot
Match: A0A6H5KYA5_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KYA5_9PHAE)

HSP 1 Score: 114 bits (285), Expect = 1.410e-28
Identity = 55/111 (49.55%), Postives = 72/111 (64.86%), Query Frame = 1
Query:    1 KAVVLETILYGRVTWSPRASHDCTLRRAHHSFLTRCIGWRKNNRTDHPISYLDTLMKTG-SENIEAIMRRMRIMFAGFVARMNDTRLPTCVVFGEIIGGAGRVGEQEKEWM 330
            +A V+ET+LYG  +WS  A H   L   H  FLTRCIGW K  R+D P+SY   L++ G  E IEA +R+ R+ FAGFV RM D+RLP  ++FG + GG G  G QE +W+
Sbjct:  117 QAEVVETLLYGCASWSLTAEHYTKLNGTHRQFLTRCIGWSKRKRSDRPLSYAQALIQAGCEETIEATVRKRRLCFAGFVMRMEDSRLPKRMLFGAMAGGVGYRGGQESDWV 227          
BLAST of mRNA_H-elongata_contig5500.12905.1 vs. uniprot
Match: A0A6H5LDM1_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LDM1_9PHAE)

HSP 1 Score: 117 bits (292), Expect = 2.530e-28
Identity = 59/136 (43.38%), Postives = 82/136 (60.29%), Query Frame = 1
Query:    1 KAVVLETILYGRVTWSPRASHDCTLRRAHHSFLTRCIGWRKNNRTDHPISYLDTLMKTG-SENIEAIMRRMRIMFAGFVARMNDTRLPTCVVFGEIIGGAGRVGEQEKEWMGCLLGDVKVFGINADQ----WRLAA 393
            +A V+ET+LYG  +WS  A H   L   H  FLTRCIGW K  R+D P+SY   L++ G  E IEA +R+ R+ FAGFV RM D+RLP  ++ G + GG G  G QE +W+  L  D+  F +  ++    W+ +A
Sbjct:  320 QAEVVETLLYGCASWSLTAEHYTKLNGTHRQFLTRCIGWSKRKRSDRPLSYAQALIQAGCEETIEATVRKRRMCFAGFVLRMEDSRLPKRMLLGAMAGGVGYRGGQESDWVSRLGEDLVAFNMGDEKEGGKWKESA 455          
BLAST of mRNA_H-elongata_contig5500.12905.1 vs. uniprot
Match: A0A6H5JTX2_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JTX2_9PHAE)

HSP 1 Score: 114 bits (286), Expect = 2.040e-27
Identity = 57/133 (42.86%), Postives = 80/133 (60.15%), Query Frame = 1
Query:   10 VLETILYGRVTWSPRASHDCTLRRAHHSFLTRCIGWRKNNRTDHPISYLDTLMKTGSEN-IEAIMRRMRIMFAGFVARMNDTRLPTCVVFGEIIGGAGRVGEQEKEWMGCLLGDVKVFGINADQ----WRLAA 393
            V+ET+LYG  +WS  A H   L   H  FLTRCI W K  R+D P+SY + L++ G E  IEA +R+ R+ FAGFV RM D+RLP  ++ G + GG G  G QE +W+  L  D+  F +  ++    W+ +A
Sbjct:  256 VVETLLYGCASWSLTAEHYTKLNGTHRQFLTRCIDWSKRKRSDRPLSYAEALIQAGCEQTIEATVRKRRLCFAGFVMRMEDSRLPKRILIGAMAGGVGYRGGQESDWVSRLGEDLVAFNMGDEKEGGKWKESA 388          
BLAST of mRNA_H-elongata_contig5500.12905.1 vs. uniprot
Match: A0A6H5K5W0_9PHAE (Uncharacterized protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K5W0_9PHAE)

HSP 1 Score: 110 bits (276), Expect = 2.130e-27
Identity = 55/118 (46.61%), Postives = 73/118 (61.86%), Query Frame = 1
Query:    1 KAVVLETILYGRVTWSPRASHDCTLRRAHHSFLTRCIGWRKNNRTDHPISYLDTLMKTG-SENIEAIMRRMRIMFAGFVARMNDTRLPTCVVFGEIIGGAGRVGEQEKEWMGCLLGDV 351
            +A V+E +LYG  +WS  A H   L   H  FLTRCIGW K  R+D P+SY   L++ G  E IEA +R+ R+ FAGFV RM D+RLP  ++ G + GG G  G QE +W+  L  D+
Sbjct:  102 QAEVVEHLLYGCASWSLTAEHYTKLNGTHRQFLTRCIGWSKRKRSDRPLSYAQALIQAGCEETIEATVRKRRLCFAGFVMRMEDSRLPKRMLLGAMAGGVGYRGGQESDWVSRLGEDL 219          
BLAST of mRNA_H-elongata_contig5500.12905.1 vs. uniprot
Match: A0A6H5JGX2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JGX2_9PHAE)

HSP 1 Score: 115 bits (288), Expect = 2.690e-27
Identity = 57/136 (41.91%), Postives = 82/136 (60.29%), Query Frame = 1
Query:    1 KAVVLETILYGRVTWSPRASHDCTLRRAHHSFLTRCIGWRKNNRTDHPISYLDTLMKTG-SENIEAIMRRMRIMFAGFVARMNDTRLPTCVVFGEIIGGAGRVGEQEKEWMGCLLGDVKVFGINADQ----WRLAA 393
            +A V++T+LYG  +WSP A H   L   H  FLTRC GW K   +D P+SY   L++ G  E IEA +R+ R+ FAGFV RM D+RLP  ++ G + GG G  G QE +W+  L  D+  F ++ ++    W+ +A
Sbjct:  635 QAEVVDTLLYGCASWSPTAEHYTKLNGTHRQFLTRCTGWSKRKCSDRPLSYAQALIQAGCEETIEATVRKRRLCFAGFVMRMEDSRLPKRMLLGAMAGGVGYRGGQESDWVSRLGEDLVAFNMSDEKEGGKWKESA 770          
BLAST of mRNA_H-elongata_contig5500.12905.1 vs. uniprot
Match: A0A6H5KZ39_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KZ39_9PHAE)

HSP 1 Score: 114 bits (285), Expect = 2.870e-27
Identity = 56/118 (47.46%), Postives = 75/118 (63.56%), Query Frame = 1
Query:    1 KAVVLETILYGRVTWSPRASHDCTLRRAHHSFLTRCIGWRKNNRTDHPISYLDTLMKTG-SENIEAIMRRMRIMFAGFVARMNDTRLPTCVVFGEIIGGAGRVGEQEKEWMGCLLGDV 351
            +A V+ET+LYG  +WS  A H   L   H  FLTRCIGW K  R+D P+SY   L++ G  E IEA +R+ R+ FAGFV RM D+RLP  ++ G + GG G  G QE++W+  L  D+
Sbjct:  222 QAEVVETLLYGCASWSLTAEHYTKLNGTHRQFLTRCIGWSKRKRSDRPLSYAQALIQAGCEETIEATVRKRRLCFAGFVMRMEDSRLPKRMLLGAMAGGVGYRGGQERDWVSRLGEDL 339          
BLAST of mRNA_H-elongata_contig5500.12905.1 vs. uniprot
Match: A0A6H5L618_9PHAE (MULE domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L618_9PHAE)

HSP 1 Score: 115 bits (287), Expect = 3.670e-27
Identity = 58/136 (42.65%), Postives = 81/136 (59.56%), Query Frame = 1
Query:    1 KAVVLETILYGRVTWSPRASHDCTLRRAHHSFLTRCIGWRKNNRTDHPISYLDTLMKTG-SENIEAIMRRMRIMFAGFVARMNDTRLPTCVVFGEIIGGAGRVGEQEKEWMGCLLGDVKVFGINADQ----WRLAA 393
            +A V+ET+LYG  +WS    H   L   H  FLTRCIGW K  R+D P+SY   L++ G  E IEA +R+ R+ FAGFV RM D+RLP  ++ G + GG G  G QE +W+  L  D+  F +  ++    W+ +A
Sbjct:  540 QAEVVETLLYGCASWSLSVEHYTKLNGTHRQFLTRCIGWSKRKRSDRPLSYAQALIQAGCKETIEATVRKRRLCFAGFVMRMEDSRLPKRMLLGAMAGGVGYRGGQESDWVPRLGEDLVAFNMRDEKEGGKWKESA 675          
BLAST of mRNA_H-elongata_contig5500.12905.1 vs. uniprot
Match: A0A6H5KMR2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KMR2_9PHAE)

HSP 1 Score: 113 bits (283), Expect = 6.640e-27
Identity = 58/136 (42.65%), Postives = 81/136 (59.56%), Query Frame = 1
Query:    1 KAVVLETILYGRVTWSPRASHDCTLRRAHHSFLTRCIGWRKNNRTDHPISYLDTLMKTGSENI-EAIMRRMRIMFAGFVARMNDTRLPTCVVFGEIIGGAGRVGEQEKEWMGCLLGDVKVFGINADQ----WRLAA 393
            +A V++T+LYG  +WS  A H   L   H  FLTRCIGW K NR+D P+SY    ++ G E I EAI+R+ R+ FAGFV RM   RLP  ++ G + GG G  G QE +W+  L  D+  F +  ++    W+ +A
Sbjct:  280 QAEVVKTLLYGCTSWSLTAEHYTKLNGTHRQFLTRCIGWSKRNRSDRPLSYAQAPIQAGCEEIIEAIVRKRRLCFAGFVVRMEYNRLPKRMLLGAMAGGVGYRGGQESDWVSRLGEDLVAFNMGDEKEGGKWKESA 415          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig5500.12905.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KGF6_9PHAE4.260e-3043.38Uncharacterized protein n=4 Tax=Ectocarpus sp. CCA... [more]
A0A6H5J747_9PHAE6.190e-2950.47Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KYA5_9PHAE1.410e-2849.55Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A6H5LDM1_9PHAE2.530e-2843.38Reverse transcriptase domain-containing protein n=... [more]
A0A6H5JTX2_9PHAE2.040e-2742.86Reverse transcriptase domain-containing protein n=... [more]
A0A6H5K5W0_9PHAE2.130e-2746.61Uncharacterized protein n=3 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JGX2_9PHAE2.690e-2741.91Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KZ39_9PHAE2.870e-2747.46Reverse transcriptase domain-containing protein n=... [more]
A0A6H5L618_9PHAE3.670e-2742.65MULE domain-containing protein n=1 Tax=Ectocarpus ... [more]
A0A6H5KMR2_9PHAE6.640e-2742.65Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig5500contigH-elongata_contig5500:5295..5690 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeMetazoa
Seed ortholog score73.9
Seed ortholog evalue6.1e-11
Seed eggNOG ortholog6500.XP_005092354.1
EggNOG free text desc.Ribonuclease H protein
EggNOG OGs3A35Z@33154,3BQYF@33208,3D7GC@33213,KOG1075@1,KOG1075@2759
COG Functional cat.S
Best tax levelBilateria
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons1
Model size396
Cds size396
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930896.9663339-CDS-H-elongata_contig5500:5294..56901622930896.9663339-CDS-H-elongata_contig5500:5294..5690Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig5500 5295..5690 +
1691679616.0716877-CDS-H-elongata_contig5500:5294..56901691679616.0716877-CDS-H-elongata_contig5500:5294..5690Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig5500 5295..5690 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig5500.12905.1prot_H-elongata_contig5500.12905.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig5500 5295..5690 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig5500.12905.1

>prot_H-elongata_contig5500.12905.1 ID=prot_H-elongata_contig5500.12905.1|Name=mRNA_H-elongata_contig5500.12905.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=132bp
KAVVLETILYGRVTWSPRASHDCTLRRAHHSFLTRCIGWRKNNRTDHPIS
YLDTLMKTGSENIEAIMRRMRIMFAGFVARMNDTRLPTCVVFGEIIGGAG
RVGEQEKEWMGCLLGDVKVFGINADQWRLAA*
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mRNA from alignment at H-elongata_contig5500:5295..5690+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig5500.12905.1 ID=mRNA_H-elongata_contig5500.12905.1|Name=mRNA_H-elongata_contig5500.12905.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=396bp|location=Sequence derived from alignment at H-elongata_contig5500:5295..5690+ (Himanthalia elongata Himel1 dioecious)
AAAGCCGTGGTACTCGAGACAATATTGTACGGCCGCGTCACGTGGAGTCC GCGCGCGAGCCACGACTGCACACTGCGCCGAGCCCATCACAGCTTCTTGA CTCGCTGCATTGGTTGGCGAAAGAACAATCGCACCGATCACCCGATCTCC TATCTGGACACTCTAATGAAGACGGGAAGCGAGAATATCGAGGCGATCAT GCGCAGGATGCGGATAATGTTCGCGGGATTCGTGGCGCGCATGAACGACA CGAGACTTCCGACGTGCGTGGTGTTTGGAGAAATCATTGGGGGCGCGGGT CGTGTGGGGGAGCAGGAAAAAGAGTGGATGGGGTGCCTTCTGGGAGACGT CAAAGTTTTTGGCATCAACGCCGACCAGTGGAGGCTTGCAGCCTAG
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Coding sequence (CDS) from alignment at H-elongata_contig5500:5295..5690+

>mRNA_H-elongata_contig5500.12905.1 ID=mRNA_H-elongata_contig5500.12905.1|Name=mRNA_H-elongata_contig5500.12905.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=792bp|location=Sequence derived from alignment at H-elongata_contig5500:5295..5690+ (Himanthalia elongata Himel1 dioecious)
AAAGCCGTGGTACTCGAGACAATATTGTACGGCCGCGTCACGTGGAGTCC
GCGCGCGAGCCACGACTGCACACTGCGCCGAGCCCATCACAGCTTCTTGA
CTCGCTGCATTGGTTGGCGAAAGAACAATCGCACCGATCACCCGATCTCC
TATCTGGACACTCTAATGAAGACGGGAAGCGAGAATATCGAGGCGATCAT
GCGCAGGATGCGGATAATGTTCGCGGGATTCGTGGCGCGCATGAACGACA
CGAGACTTCCGACGTGCGTGGTGTTTGGAGAAATCATTGGGGGCGCGGGT
CGTGTGGGGGAGCAGGAAAAAGAGTGGATGGGGTGCCTTCTGGGAGACGT
CAAAGTTTTTGGCATCAACGCCGACCAGTGGAGGCTTGCAGCCTAGAAAG
CCGTGGTACTCGAGACAATATTGTACGGCCGCGTCACGTGGAGTCCGCGC
GCGAGCCACGACTGCACACTGCGCCGAGCCCATCACAGCTTCTTGACTCG
CTGCATTGGTTGGCGAAAGAACAATCGCACCGATCACCCGATCTCCTATC
TGGACACTCTAATGAAGACGGGAAGCGAGAATATCGAGGCGATCATGCGC
AGGATGCGGATAATGTTCGCGGGATTCGTGGCGCGCATGAACGACACGAG
ACTTCCGACGTGCGTGGTGTTTGGAGAAATCATTGGGGGCGCGGGTCGTG
TGGGGGAGCAGGAAAAAGAGTGGATGGGGTGCCTTCTGGGAGACGTCAAA
GTTTTTGGCATCAACGCCGACCAGTGGAGGCTTGCAGCCTAG
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